SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Geobacillus sp. WCH70 > Pepsin inhibitor-3 domains


Pepsin inhibitor-3 superfamily domain assignments
in
Geobacillus sp. WCH70

Network of domain occurrence in all genomes


No domain assignments for these genomes.

Add assignments from groups of genomes

View all assignments containing a Pepsin inhibitor-3 domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   375 375
No Yes Pristionchus pacificus   7 7
No Yes Meloidogyne incognita Southern root-knot nematode 4 4
No Yes Meloidogyne hapla   3 3
No Yes Onchocerca volvulus 22   2 2
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 4 4
No Yes Caenorhabditis japonica   3 3
No Yes Caenorhabditis brenneri   3 3
No Yes Caenorhabditis remanei   3 3
No Yes Caenorhabditis elegans 76_235 Roundworm 5 5
No Yes Caenorhabditis briggsae 2   3 3
No Yes Ascaris suum Victoria/Ghent Pig roundworm 14 14
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 4 4
No Yes Loa loa v3.3 (Request) Eye worm 2 2
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 2 2
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 1 1
No Yes Caenorhabditis elegans 69_215 Roundworm 3 3
No Yes NCBI 2017_08 genome   16 16
No Yes STRING v9.0.5 (STRING)   15 15
No Yes Uniprot 2018_03 genome   237 232
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   2 2
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   8 8
No Yes TargetDB (Targets)   1 1

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.