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RuBisCO, small subunit superfamily domain assignments
in
Clostridium perfringens ATCC 13124


No domain assignments for these genomes.


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View all assignments containing a RuBisCO, small subunit domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   11446 11446
No Yes Selaginella moellendorffii   4 4
No Yes Pinus taeda Loblolly pine 5 5
No Yes Picea abies Norway spruce 1 1
No Yes Eucalyptus grandis v201 Rose gum 5 5
No Yes Theobroma cacao B97-61/B2 v1 Cacao 5 5
No Yes Gossypium raimondii v221   6 6
No Yes Citrus clementina v165   5 5
No Yes Citrus sinensis v154 Sweet orange 3 3
No Yes Thellungiella halophila v173   3 3
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 7 7
No Yes Capsella rubella v183   4 4
No Yes Arabidopsis lyrata Lyrate rockcress 3 3
No Yes Arabidopsis thaliana 10 Thale cress 7 7
No Yes Carica papaya Papaya 4 4
No Yes Medicago truncatula Barrel medic 10 10
No Yes Phaseolus vulgaris v186 French bean 3 3
No Yes Glycine max v109 Soybean 15 15
No Yes Cucumis sativus v122 Cucumber 1 1
No Yes Fragaria vesca Wild strawberry 3 3
No Yes Malus domestica v196 Apple 10 10
No Yes Prunus persica v139 Peach 3 3
No Yes Linum usitatissimum v200 Flax 6 6
No Yes Manihot esculenta v147 Cassava 6 6
No Yes Populus trichocarpa v156 Black cottonwood 5 5
No Yes Vitis vinifera Wine grape 2 2
No Yes Mimulus guttatus v140 Spotted monkey flower 6 6
No Yes Solanum lycopersicum v.2.3 Tomato 4 4
No Yes Solanum tuberosum Potato 11 11
No Yes Actinidia chinensis Hongyang   3 3
No Yes Aquilegia coerulea v195   6 6
No Yes Triticum urartu 22   10 9
No Yes Triticum aestivum 22 Bread wheat 33 33
No Yes Aegilops tauschii 22   10 9
No Yes Brachypodium distachyon Stiff brome 6 6
No Yes Oryza barthii 22 African wild rice 6 6
No Yes Oryza meridionalis 22   5 5
No Yes Oryza glumaepatula 22   6 6
No Yes Oryza glaberrima African rice 5 5
No Yes Oryza punctata 22   8 8
No Yes Oryza nivara 22   4 4
No Yes Oryza brachyantha 22 Malo sina 5 5
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 7 7
No Yes Oryza sativa v193 Rice 7 7
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 4 4
No Yes Panicum virgatum v202 Switchgrass 4 4
No Yes Setaria italica v164 Foxtail millet 6 6
No Yes Zea mays subsp. mays Maize 4 4
No Yes Zea mays v181 Maize 4 4
No Yes Sorghum bicolor Sorghum 1 1
No Yes Musa balbisiana Balbis banana 4 4
No Yes Musa acuminata 22 Wild Malaysian banana 5 5
No Yes Amborella trichopoda 22   2 2
No Yes Physcomitrella patens   28 28
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Asterochloris sp. Cgr/DA1pho v1.0   1 1
No Yes Chlorella variabilis sp. NC64A   2 2
No Yes Chlorella vulgaris   1 1
No Yes Volvox carteri f. nagariensis   5 5
No Yes Volvox carteri v199   9 9
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Ostreococcus sp. RCC809   3 3
No Yes Ostreococcus lucimarinus CCE9901   3 3
No Yes Ostreococcus tauri   3 3
No Yes Bathycoccus prasinos   3 3
No Yes Micromonas sp. RCC299   2 2
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Cyanidioschyzon merolae strain 10D 22   1 1
No Yes Cyanidioschyzon merolae   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leptolyngbya sp. PCC 7376   5 2
No Yes Pseudanabaena sp. PCC 7367   5 2
No Yes Acaryochloris marina MBIC11017   8 4
No Yes Synechocystis sp. PCC 6803   5 2
No Yes Thermosynechococcus sp. NK55   5 2
No Yes Thermosynechococcus elongatus BP-1   5 2
No Yes Synechococcus sp. PCC 7502   6 3
No Yes Synechococcus sp. PCC 6312   5 2
No Yes Synechococcus sp. CC9311   1 1
No Yes Synechococcus elongatus PCC 7942   4 2
No Yes Prochlorococcus marinus str. MIT 9515   1 1
No Yes Microcoleus sp. PCC 7113   6 4
No Yes Trichodesmium erythraeum IMS101   6 3
No Yes Geitlerinema sp. PCC 7407   5 3
No Yes Cyanothece sp. PCC 8802   5 2
No Yes Gloeocapsa sp. PCC 7428   5 3
No Yes Halothece sp. PCC 7418   5 2
No Yes Microcystis aeruginosa NIES-843   5 2
No Yes Gloeobacter violaceus PCC 7421   5 2
No Yes Rivularia sp. PCC 7116   6 3
No Yes Calothrix sp. PCC 7507   5 3
No Yes Anabaena variabilis ATCC 29413   5 3
No Yes 'Nostoc azollae' 0708   5 3
No Yes Nostoc sp. PCC 7107   5 3
No Yes Nostoc punctiforme PCC 73102   6 3
No Yes Nostoc sp. PCC 7120   5 3
No Yes Nostoc sp. PCC 7524   5 3
No Yes Anabaena sp. 90   5 3
No Yes Acidimicrobium ferrooxidans DSM 10331   1 1
No Yes Thermomonospora curvata DSM 43183   1 1
No Yes Pseudonocardia dioxanivorans CB1190   1 1
No Yes Microlunatus phosphovorus NM-1   1 1
No Yes Nocardia cyriacigeorgica GUH-2   1 1
No Yes Meiothermus silvanus DSM 9946   1 1
No Yes Sulfobacillus acidophilus DSM 10332   1 1
No Yes Kyrpidia tusciae DSM 2912   1 1
No Yes Methylacidiphilum infernorum V4   1 1
No Yes Candidatus Methylomirabilis oxyfera   1 1
No Yes Acidithiobacillus ferrivorans SS3   2 2
No Yes Acidithiobacillus caldus SM-1   1 1
No Yes Acidithiobacillus ferrooxidans ATCC 53993   2 2
No Yes Azoarcus sp. KH32C   1 1
No Yes Methylibium petroleiphilum PM1   2 2
No Yes Thiomonas arsenitoxydans   1 1
No Yes Thiomonas intermedia K12   1 1
No Yes Rubrivivax gelatinosus IL144   1 1
No Yes Burkholderia phymatum STM815   1 1
No Yes Burkholderia xenovorans LB400   1 1
No Yes Cupriavidus taiwanensis LMG 19424   1 1
No Yes Cupriavidus metallidurans CH34   1 1
No Yes Cupriavidus necator N-1   1 1
No Yes Ralstonia eutropha H16   2 2
No Yes Burkholderia sp. RPE64   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Variovorax paradoxus S110   1 1
No Yes Advenella kashmirensis WT001   1 1
No Yes Thiobacillus denitrificans ATCC 25259   1 1
No Yes Nitrosospira multiformis ATCC 25196   1 1
No Yes Nitrosomonas sp. Is79A3   2 2
No Yes Nitrosomonas eutropha C91   1 1
No Yes Nitrosomonas europaea ATCC 19718   1 1
No Yes Sideroxydans lithotrophicus ES-1   1 1
No Yes Rhodobacter sphaeroides ATCC 17029   1 1
No Yes Rhodobacter capsulatus SB 1003   1 1
No Yes Paracoccus denitrificans PD1222   1 1
No Yes Rhodospirillum photometricum DSM 122   1 1
No Yes Rhodospirillum centenum SW   2 2
No Yes Azospirillum lipoferum 4B   1 1
No Yes Acidiphilium multivorum AIU301   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Polymorphum gilvum SL003B-26A1   1 1
No Yes Starkeya novella DSM 506   1 1
No Yes Xanthobacter autotrophicus Py2   1 1
No Yes Sinorhizobium medicae WSM419   1 1
No Yes Sinorhizobium meliloti AK83   1 1
No Yes Mesorhizobium opportunistum WSM2075   1 1
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   1 1
No Yes Methylocella silvestris BL2   1 1
No Yes Rhodomicrobium vannielii ATCC 17100   1 1
No Yes Oligotropha carboxidovorans OM4   1 1
No Yes Rhodopseudomonas palustris BisA53   1 1
No Yes Nitrobacter winogradskyi Nb-255   2 2
No Yes Nitrobacter hamburgensis X14   3 3
No Yes Bradyrhizobium japonicum USDA 110   1 1
No Yes Bradyrhizobium sp. ORS 278   2 2
No Yes Methylococcus capsulatus str. Bath   1 1
No Yes Halothiobacillus neapolitanus c2   1 1
No Yes Alkalilimnicola ehrlichii MLHE-1   1 1
No Yes Thioalkalivibrio sulfidophilus HL-EbGr7   1 1
No Yes Thioalkalivibrio sp. K90mix   1 1
No Yes Halorhodospira halophila SL1   1 1
No Yes Allochromatium vinosum DSM 180   3 3
No Yes Thiocystis violascens DSM 198   1 1
No Yes Nitrosococcus watsonii C-113   1 1
No Yes Nitrosococcus halophilus Nc4   2 2
No Yes Nitrosococcus oceani ATCC 19707   1 1
No Yes Methylophaga sp. JAM1   1 1
No Yes Thiomicrospira crunogena XCL-2   2 2
No Yes Thioalkalimicrobium cyclicum ALM1   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 4 4
No Yes Hordeum vulgare 22 Domesticated barley 5 5
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 5 5
No Yes Chroococcidiopsis thermalis PCC 7203   5 3
No Yes Chamaesiphon minutus PCC 6605   7 3
No Yes Synechocystis sp. PCC 6803 substr. PCC-P   5 2
No Yes Synechocystis sp. PCC 6803 substr. PCC-N   5 2
No Yes Synechocystis sp. PCC 6803 substr. GT-I   5 2
No Yes Synechocystis sp. PCC 6803   5 2
No Yes Cyanobium gracile PCC 6307   1 1
No Yes Dactylococcopsis salina PCC 8305   5 2
No Yes Synechococcus sp. JA-2-3B'a(2-13)   5 2
No Yes Synechococcus sp. JA-3-3Ab   6 3
No Yes Synechococcus sp. CC9902   1 1
No Yes Synechococcus sp. RCC307   1 1
No Yes Synechococcus sp. CC9605   1 1
No Yes Synechococcus sp. WH 8102   1 1
No Yes Synechococcus sp. WH 7803   1 1
No Yes Synechococcus sp. PCC 7002   5 2
No Yes Synechococcus elongatus PCC 6301   4 2
No Yes Prochlorococcus marinus str. NATL1A   1 1
No Yes Prochlorococcus marinus str. MIT 9301   1 1
No Yes Prochlorococcus marinus str. AS9601   1 1
No Yes Prochlorococcus marinus subsp. marinus str. CCMP1375   1 1
No Yes Prochlorococcus marinus subsp. pastoris str. CCMP1986   1 1
No Yes Prochlorococcus marinus str. MIT 9215   1 1
No Yes Prochlorococcus marinus str. MIT 9211   1 1
No Yes Prochlorococcus marinus str. MIT 9313   1 1
No Yes Prochlorococcus marinus str. MIT 9312   1 1
No Yes Prochlorococcus marinus str. MIT 9303   1 1
No Yes Prochlorococcus marinus str. NATL2A   1 1
No Yes Crinalium epipsammum PCC 9333   5 3
No Yes Oscillatoria nigro-viridis PCC 7112   5 3
No Yes Oscillatoria acuminata PCC 6304   5 3
No Yes Arthrospira platensis NIES-39   4 2
No Yes Cyanothece sp. PCC 7822   5 2
No Yes Cyanothece sp. PCC 7425   6 3
No Yes Cyanothece sp. PCC 7424   5 2
No Yes Cyanothece sp. ATCC 51142   5 2
No Yes Cyanothece sp. PCC 8801   5 2
No Yes Cyanobacterium aponinum PCC 10605   5 2
No Yes Cyanobacterium stanieri PCC 7202   5 2
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   5 2
No Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327   5 2
No Yes Stanieria cyanosphaera PCC 7437   5 2
No Yes Calothrix parietina Calothrix sp. PCC 6303   5 3
No Yes Cylindrospermum stagnale PCC 7417   5 3
No Yes Anabaena cylindrica PCC 7122   5 3
No Yes Thermus oshimai JL-2   1 1
No Yes Sulfobacillus acidophilus TPY   1 1
No Yes Acidithiobacillus ferrooxidans ATCC 23270   2 2
No Yes Burkholderia phenoliruptrix BR3459a   1 1
No Yes Burkholderia sp. YI23   1 1
No Yes Burkholderia sp. CCGE1003   1 1
No Yes Burkholderia sp. CCGE1001   1 1
No Yes Variovorax paradoxus B4   1 1
No Yes Nitrosomonas sp. AL212   2 2
No Yes Sulfuricella denitrificans skB26   1 1
No Yes Rhodobacter sphaeroides KD131   1 1
No Yes Rhodobacter sphaeroides ATCC 17025   2 2
No Yes Rhodobacter sphaeroides 2.4.1   1 1
No Yes Sinorhizobium fredii USDA 257   1 1
No Yes Sinorhizobium fredii HH103   1 1
No Yes Sinorhizobium meliloti 2011   1 1
No Yes Sinorhizobium meliloti GR4   1 1
No Yes Sinorhizobium meliloti Rm41   1 1
No Yes Sinorhizobium meliloti SM11   1 1
No Yes Sinorhizobium meliloti BL225C   1 1
No Yes Sinorhizobium meliloti 1021   1 1
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Rhodopseudomonas palustris DX-1   1 1
No Yes Rhodopseudomonas palustris TIE-1   1 1
No Yes Rhodopseudomonas palustris HaA2   1 1
No Yes Rhodopseudomonas palustris BisB5   2 2
No Yes Rhodopseudomonas palustris BisB18   1 1
No Yes Rhodopseudomonas palustris CGA009   1 1
No Yes Bradyrhizobium sp. S23321   1 1
No Yes Bradyrhizobium sp. BTAi1   3 3
No Yes Bradyrhizobium oligotrophicum S58   1 1
No Yes Bradyrhizobium japonicum USDA 6   1 1
No Yes Thioalkalivibrio nitratireducens DSM 14787   1 1
No Yes Thioflavicoccus mobilis 8321   2 2
No Yes Picea sitchensis (Incomplete) Sitka spruce 7 7
No Yes Lotus japonicus (Early assembly)   6 6
No Yes Malus x domestica (Duplicate) Apple 10 10
No Yes Ricinus communis (Early assembly) Castor bean 4 4
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   13 12
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 4 4
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 4 4
No Yes Phoenix dactylifera (Early draft) Date palm 2 2
No Yes Guillardia theta (nucleomorph)   1 1
No Yes Arabidopsis thaliana 10 Thale cress 4 4
No Yes 3_050719R (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   22 12
No Yes 5_050719P (meta-genome)   8 5
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   2 2
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   6 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   17 11
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   13 5
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   2 2
No Yes NCBI 2017_08 genome   3304 2672
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Olavius algarvensis endosymbiont metagenome Gamma1 (meta-genome)   1 1
No Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)   1 1
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   8 8
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   7 7
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   10 9
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   2 2
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   3 3
No Yes STRING v9.0.5 (STRING)   242 187
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   5001 4346
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   1 1
No Yes Global Ocean Sampling Expedition (GOS)   119 119
No Yes NCBI plasmid sequences (Plasmids)   18 18
No Yes PDB chains (SCOP 1.75) (PDB)   16 16
No Yes Protein Data Bank (all PDB sequenc)   279 279
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   731 731
No Yes TargetDB (Targets)   15 4

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