SUPERFAMILY 1.75 HMM library and genome assignments server

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Bactericidal permeability-increasing protein, BPI superfamily domain assignments
in
Vanderwaltozyma polyspora DSM 70294


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Select to display   Genome       Domains   Proteins
No Yes ALL   21506 21506
No Yes Homo sapiens 76_38 Human 50 29
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 22 13
No Yes Gorilla gorilla 76_3.1 Western gorilla 26 15
No Yes Pongo abelii 76_2 Sumatran orangutan 23 13
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 23 13
No Yes Papio anubis 76 Olive baboon 22 14
No Yes Macaca mulatta 76_1 Rhesus monkey 29 17
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 43 26
No Yes Otolemur garnettii 76_3 Small-eared galago 23 13
No Yes Microcebus murinus 76_1 Gray mouse lemur 21 11
No Yes Rattus norvegicus 76_5.0 Norway rat 25 17
No Yes Mus musculus 76_38 House mouse 51 32
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 20 11
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 26 16
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 25 15
No Yes Cavia porcellus 76_3 Domestic guinea pig 22 13
No Yes Oryctolagus cuniculus 76_2 Rabbit 25 14
No Yes Ochotona princeps 76 American pika 21 11
No Yes Tupaia belangeri 76 Northern tree shrew 19 10
No Yes Sus scrofa 76_10.2 Pig 31 21
No Yes Bos taurus 76_3.1 Cattle 32 21
No Yes Ovis aries 76_3.1 Sheep 34 21
No Yes Vicugna pacos 76_1 Alpaca 16 9
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 15 9
No Yes Mustela putorius furo 76_1.0 Domestic ferret 20 12
No Yes Ailuropoda melanoleuca 76_1 Giant panda 25 14
No Yes Canis familiaris 76_3.1 Dog 28 17
No Yes Felis catus 76_6.2 Domestic cat 28 16
No Yes Equus caballus 76_2 Horse 25 15
No Yes Myotis lucifugus 76_2.0 Little brown bat 24 15
No Yes Pteropus vampyrus 76_1 Large flying fox 20 12
No Yes Sorex araneus 76_1 European shrew 11 8
No Yes Erinaceus europaeus 76 Western European hedgehog 17 8
No Yes Procavia capensis 76_1 Cape rock hyrax 22 13
No Yes Loxodonta africana 76_3 African savanna elephant 31 17
No Yes Echinops telfairi 76 Small Madagascar hedgehog 24 14
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 31 19
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 6 3
No Yes Macropus eugenii 76_1.0 Tammar wallaby 14 8
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 31 18
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 27 14
No Yes Ornithorhynchus anatinus 76_5 Platypus 19 11
No Yes Saccoglossus kowalevskii v3.0   14 7
No Yes Petromyzon marinus 76_7.0 Sea lamprey 4 3
No Yes Meleagris gallopavo 76_2 Turkey 16 8
No Yes Gallus gallus 76_4 Chicken 19 10
No Yes Anas platyrhynchos 76_1.0 Mallard 22 13
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 13 8
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 17 9
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 11 6
No Yes Anolis carolinensis 76_2.0 Green anole 21 12
No Yes Xenopus laevis African clawed frog 20 10
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 17 9
No Yes Latimeria chalumnae 76_1 Coelacanth 8 4
No Yes Lepisosteus oculatus 76 Spotted gar 10 6
No Yes Gadus morhua 76_1 Atlantic cod 16 8
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 9 5
No Yes Takifugu rubripes 76_4 Torafugu 31 16
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 18 9
No Yes Oryzias latipes 76_1 Japanese medaka 10 5
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 8 4
No Yes Poecilia formosa 76 Amazon molly 8 4
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 9 5
No Yes Astyanax mexicanus 76 Mexican tetra 9 4
No Yes Danio rerio 76_9 Zebrafish 8 5
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 4 3
No Yes Ciona intestinalis 76 Vase tunicate 11 8
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 3 2
No Yes Octopus bimaculoides 280   7 4
No Yes Crassostrea gigas 22 Pacific oyster 3 2
No Yes Lottia gigantea Owl limpet 2 1
No Yes Helobdella robusta   11 6
No Yes Capitella sp. I   15 9
No Yes Danaus plexippus OGS1.0 Monarch butterfly 2 2
No Yes Heliconius melpomene Postman butterfly 1 1
No Yes Bombyx mori Domestic silkworm 1 1
No Yes Nasonia vitripennis Jewel wasp 1 1
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 1 1
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 1 1
No Yes Linepithema humile v1.1 Argentine ant 2 2
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 1 1
No Yes Solenopsis invicta v.2.2.3 Red fire ant 1 1
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 1 1
No Yes Atta cephalotes v1.1   1 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 1 1
No Yes Lucilia cuprina Australian sheep blowfly 2 2
No Yes Drosophila grimshawi 1.3   1 1
No Yes Drosophila willistoni 1.3   2 1
No Yes Drosophila pseudoobscura 2.13   1 1
No Yes Drosophila persimilis 1.3   1 1
No Yes Drosophila suzukii   1 1
No Yes Drosophila yakuba 1.3   1 1
No Yes Drosophila simulans 1.3   2 2
No Yes Drosophila sechellia 1.3   1 1
No Yes Drosophila melanogaster 76_5 Fruit fly 1 1
No Yes Drosophila erecta 1.3   1 1
No Yes Drosophila ananassae 1.3   2 1
No Yes Drosophila virilis 1.2   1 1
No Yes Drosophila mojavensis 1.3   3 2
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 1 1
No Yes Culex pipiens quinquefasciatus Southern house mosquito 1 1
No Yes Anopheles darlingi 22 American malaria mosquito 1 1
No Yes Anopheles gambiae 49_3j African malaria mosquito 1 1
No Yes Tribolium castaneum 3.0 Red flour beetle 2 2
No Yes Pediculus humanus corporis (Early assembly) Human body louse 2 2
No Yes Rhodnius prolixus 22   1 1
No Yes Daphnia pulex Common water flea 1 1
No Yes Strigamia maritima 22   3 3
No Yes Ixodes scapularis (Preliminary) Black-legged tick 1 1
No Yes Pristionchus pacificus   35 21
No Yes Meloidogyne incognita Southern root-knot nematode 25 15
No Yes Meloidogyne hapla   11 9
No Yes Onchocerca volvulus 22   28 15
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 23 14
No Yes Caenorhabditis japonica   23 15
No Yes Caenorhabditis brenneri   29 17
No Yes Caenorhabditis remanei   26 15
No Yes Caenorhabditis elegans 76_235 Roundworm 29 17
No Yes Caenorhabditis briggsae 2   24 13
No Yes Trichinella spiralis 22   13 7
No Yes Mnemiopsis leidyi Sea walnut 12 8
No Yes Acropora digitifera v1.0   3 2
No Yes Nematostella vectensis 1.0 Starlet sea anemone 7 4
No Yes Hydra vulgaris   3 2
No Yes Amphimedon queenslandica   6 4
No Yes Trichoplax adhaerens   1 1
No Yes Proterospongia sp. ATCC 50818   3 2
No Yes Monosiga brevicollis   4 2
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   3 2
No Yes Conidiobolus coronatus NRRL28638 v1.0   1 1
No Yes Phycomyces blakesleeanus   1 1
No Yes Rhizopus oryzae RA 99-880   2 2
No Yes Mucor circinelloides   2 2
No Yes Rhizomucor miehei CAU432   1 1
No Yes Mixia osmundae IAM 14324 v1.0   1 1
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   1 1
No Yes Melampsora laricis-populina   1 1
No Yes Rhodotorula graminis WP1 v1.0   1 1
No Yes Sporobolomyces roseus IAM 13481   1 1
No Yes Microbotryum violaceum 22   1 1
No Yes Wallemia sebi v1.0   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Piloderma croceum F 1598 v1.0   2 2
No Yes Serpula lacrymans var. lacrymans S7.9   1 1
No Yes Coniophora puteana   1 1
No Yes Hydnomerulius pinastri v2.0   2 2
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   1 1
No Yes Pisolithus microcarpus 441 v1.0   1 1
No Yes Pisolithus tinctorius Marx 270 v1.0   1 1
No Yes Scleroderma citrinum Foug A v1.0   1 1
No Yes Coprinopsis cinerea okayama7 130 v3   1 1
No Yes Pleurotus ostreatus Oyster mushroom 2 2
No Yes Amanita thiersii Skay4041 v1.0   1 1
No Yes Amanita muscaria Koide v1.0 Fly agaric 1 1
No Yes Galerina marginata v1.0   3 3
No Yes Hebeloma cylindrosporum h7 v2.0   1 1
No Yes Laccaria bicolor S238N-H82   1 1
No Yes Schizophyllum commune   2 2
No Yes Stereum hirsutum FP-91666 SS1 v1.0   1 1
No Yes Heterobasidion annosum   1 1
No Yes Gloeophyllum trabeumv1.0   1 1
No Yes Punctularia strigosozonata v1.0   2 2
No Yes Fomitiporia mediterranea v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Postia placenta   2 2
No Yes Wolfiporia cocos MD-104 SS10 v1.0   2 2
No Yes Fomitopsis pinicolav1.0   2 2
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   2 2
No Yes Phanerochaete chrysosporium RP-78 2.1   1 1
No Yes Dichomitus squalens   2 2
No Yes Trametes versicolor v1.0   2 2
No Yes Tremella mesenterica Witches' butter 1 1
No Yes Daldinia eschscholzii EC12 v1.0   1 1
No Yes Apiospora montagnei NRRL 25634 v1.0   1 1
No Yes Magnaporthe poae ATCC 64411 22   1 1
No Yes Magnaporthe grisea 70-15   1 1
No Yes Podospora anserina   1 1
No Yes Sporotrichum thermophile ATCC 42464   1 1
No Yes Thielavia terrestris NRRL 8126   1 1
No Yes Chaetomium globosum CBS 148.51   1 1
No Yes Neurospora tetrasperma   1 1
No Yes Neurospora discreta FGSC 8579   1 1
No Yes Neurospora crassa OR74A   1 1
No Yes Cryphonectria parasitica Chestnut blight fungus 1 1
No Yes Verticillium albo-atrum VaMs.102   2 2
No Yes Verticillium dahliae VdLs.17   2 2
No Yes Acremonium alcalophilumv 1.0   1 1
No Yes Glomerella graminicola 22   1 1
No Yes Fusarium graminearum   1 1
No Yes Nectria haematococca mpVI   1 1
No Yes Fusarium oxysporum f. sp. lycopersici 4286   2 2
No Yes Fusarium verticillioides 7600   2 2
No Yes Trichoderma asperellum CBS 433.97 v1.0   1 1
No Yes Trichoderma atroviride   1 1
No Yes Trichoderma citrinoviride v1.0   1 1
No Yes Trichoderma reesei 1.2   1 1
No Yes Trichoderma virens Gv29-8   1 1
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   1 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   1 1
No Yes Amorphotheca resinae v1.0 Creosote fungus 1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Blumeria graminis 22   1 1
No Yes Didymella exigua CBS 183.55 v1.0   2 2
No Yes Leptosphaeria maculans 22   2 2
No Yes Setosphaeria turcica v1.0   2 2
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   2 2
No Yes Cochliobolus victoriae FI3 v1.0   2 2
No Yes Cochliobolus carbonum 26-R-13 v1.0   2 2
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 2 2
No Yes Alternaria brassicicola   2 2
No Yes Cochliobolus lunatus m118 v2.0   2 2
No Yes Pyrenophora teres f. teres 22   2 2
No Yes Pyrenophora tritici-repentis   2 2
No Yes Stagonospora nodorum   2 2
No Yes Mycosphaerella graminicola IPO323   2 2
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Dothistroma septosporum   1 1
No Yes Septoria musiva v1.0   2 2
No Yes Mycosphaerella fijiensis CIRAD86   2 2
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   2 2
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Coccidioides posadasii RMSCC 3488   1 1
No Yes Coccidioides immitis RS   1 1
No Yes Ajellomyces dermatitidis SLH14081   1 1
No Yes Microsporum canis CBS 113480   1 1
No Yes Trichophyton equinum CBS 127.97   1 1
No Yes Trichophyton verrucosum HKI 0517   1 1
No Yes Arthroderma benhamiae CBS 112371   1 1
No Yes Trichophyton tonsurans CBS 112818   1 1
No Yes Trichophyton rubrum CBS 118892   1 1
No Yes Uncinocarpus reesii 1704   1 1
No Yes Aspergillus zonatus v1.0   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   2 2
No Yes Aspergillus fumigatus Af293   2 2
No Yes Aspergillus brasiliensis v1.0   2 2
No Yes Aspergillus nidulans FGSC A4   2 2
No Yes Aspergillus sydowii v1.0   2 2
No Yes Aspergillus versicolor v1.0   2 2
No Yes Aspergillus glaucus   3 3
No Yes Aspergillus carbonarius ITEM 5010   1 1
No Yes Neosartorya fischeri NRRL 181   2 2
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   2 2
No Yes Aspergillus wentii v1.0   2 2
No Yes Aspergillus oryzae RIB40   1 1
No Yes Aspergillus niger 22   2 2
No Yes Aspergillus flavus NRRL3357   1 1
No Yes Aspergillus clavatus NRRL 1   2 2
No Yes Penicillium marneffei ATCC 18224   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Spizellomyces punctatus DAOM BR117   2 2
No Yes Dictyostelium discoideum   6 5
No Yes Dictyostelium purpureum   5 5
No Yes Selaginella moellendorffii   4 2
No Yes Picea abies Norway spruce 2 1
No Yes Eucalyptus grandis v201 Rose gum 11 6
No Yes Theobroma cacao B97-61/B2 v1 Cacao 5 3
No Yes Gossypium raimondii v221   15 8
No Yes Citrus clementina v165   8 4
No Yes Citrus sinensis v154 Sweet orange 15 8
No Yes Thellungiella halophila v173   4 2
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 4 2
No Yes Capsella rubella v183   4 2
No Yes Arabidopsis lyrata Lyrate rockcress 5 3
No Yes Arabidopsis thaliana 10 Thale cress 10 5
No Yes Carica papaya Papaya 4 2
No Yes Medicago truncatula Barrel medic 7 4
No Yes Phaseolus vulgaris v186 French bean 8 4
No Yes Glycine max v109 Soybean 12 6
No Yes Cucumis sativus v122 Cucumber 5 3
No Yes Fragaria vesca Wild strawberry 4 2
No Yes Malus domestica v196 Apple 5 3
No Yes Prunus persica v139 Peach 6 3
No Yes Linum usitatissimum v200 Flax 4 2
No Yes Manihot esculenta v147 Cassava 6 3
No Yes Populus trichocarpa v156 Black cottonwood 4 2
No Yes Vitis vinifera Wine grape 4 2
No Yes Mimulus guttatus v140 Spotted monkey flower 2 1
No Yes Solanum lycopersicum v.2.3 Tomato 2 1
No Yes Solanum tuberosum Potato 6 4
No Yes Actinidia chinensis Hongyang   8 4
No Yes Aquilegia coerulea v195   5 4
No Yes Triticum urartu 22   2 1
No Yes Triticum aestivum 22 Bread wheat 13 7
No Yes Aegilops tauschii 22   4 2
No Yes Brachypodium distachyon Stiff brome 4 2
No Yes Oryza barthii 22 African wild rice 4 2
No Yes Oryza meridionalis 22   6 3
No Yes Oryza glumaepatula 22   4 2
No Yes Oryza glaberrima African rice 6 3
No Yes Oryza punctata 22   4 2
No Yes Oryza nivara 22   4 2
No Yes Oryza brachyantha 22 Malo sina 4 2
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 6 3
No Yes Oryza sativa v193 Rice 6 3
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 6 4
No Yes Panicum virgatum v202 Switchgrass 8 4
No Yes Setaria italica v164 Foxtail millet 8 4
No Yes Zea mays subsp. mays Maize 5 3
No Yes Zea mays v181 Maize 5 3
No Yes Sorghum bicolor Sorghum 4 2
No Yes Musa balbisiana Balbis banana 2 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 1
No Yes Amborella trichopoda 22   2 1
No Yes Physcomitrella patens   6 3
No Yes Asterochloris sp. Cgr/DA1pho v1.0   2 1
No Yes Volvox carteri f. nagariensis   2 1
No Yes Volvox carteri v199   2 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Ostreococcus tauri   1 1
No Yes Thecamonas trahens ATCC 50062   10 7
No Yes Bigelowiella natans CCMP2755 22   6 5
No Yes Giardia lamblia 2.3   9 9
No Yes Leishmania mexicana 2.4   1 1
No Yes Leishmania major strain Friedlin   1 1
No Yes Leishmania infantum JPCM5 2.4   1 1
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   18 12
No Yes Trypanosoma congolense 2.4   12 9
No Yes Trypanosoma brucei gambiense v4.1   12 7
No Yes Trypanosoma brucei TREU927 v4.1   9 5
No Yes Aureococcus anophagefferens   4 3
No Yes Albugo laibachii 22   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Hyaloperonospora arabidopsidis 22   1 1
No Yes Phaeodactylum tricornutumCCAP 1055/1   3 3
No Yes Fragilariopsis cylindrus   5 5
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Paramecium tetraurelia   1 1
No Yes Tetrahymena thermophila SB210 1   15 9
No Yes Ichthyophthirius multifiliis strain G5   1 1
No Yes Symbiodinium minutum clade B1 v1.2   4 4
No Yes Naegleria gruberi   8 4
No Yes Trichomonas vaginalis   4 4
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Niastella koreensis GR20-10   1 1
No Yes Sorangium cellulosum 'So ce 56'   1 1
No Yes gamma proteobacterium HdN1   2 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 30 15
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 1 1
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 1 1
No Yes Ascaris suum Victoria/Ghent Pig roundworm 25 16
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 25 15
No Yes Paracoccidioides brasiliensis Pb01   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Coccidioides posadasii str. Silveira   1 1
No Yes Coccidioides immitis RMSCC 2394   1 1
No Yes Coccidioides immitis H538.4   1 1
No Yes Ajellomyces dermatitidis ER-3   1 1
No Yes Histoplasma capsulatum H143   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Aspergillus fumigatus A1163   2 2
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 5 2
No Yes Hordeum vulgare 22 Domesticated barley 20 12
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 4 2
No Yes Trypanosoma brucei Lister 427 v4.1   8 5
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 50 29
No Yes Homo sapiens (NCBI version) Human 32 18
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 25 15
No Yes Loa loa v3.3 (Request) Eye worm 25 18
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 33 31
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 15 10
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Lotus japonicus (Early assembly)   6 5
No Yes Malus x domestica (Duplicate) Apple 5 3
No Yes Ricinus communis (Early assembly) Castor bean 4 2
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   4 2
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 2 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 2 1
No Yes Phoenix dactylifera (Early draft) Date palm 4 3
No Yes Homo sapiens 69_37 Human 23 13
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 22 13
No Yes Gorilla gorilla 69_3.1 Western gorilla 24 14
No Yes Pongo abelii 69_2 Sumatran orangutan 21 12
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 23 13
No Yes Macaca mulatta 69_1 Rhesus monkey 23 13
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 25 15
No Yes Otolemur garnettii 69_3 Small-eared galago 23 13
No Yes Microcebus murinus 69_1 Gray mouse lemur 21 11
No Yes Rattus norvegicus 69_3.4 Norway rat 24 15
No Yes Mus musculus 69_38 House mouse 27 17
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 20 11
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 23 13
No Yes Cavia porcellus 69_3 Domestic guinea pig 22 13
No Yes Oryctolagus cuniculus 69_2 Rabbit 22 12
No Yes Ochotona princeps 69 American pika 21 11
No Yes Tupaia belangeri 69 Northern tree shrew 19 10
No Yes Sus scrofa 69_10.2 Pig 23 14
No Yes Bos taurus 69_3.1 Cattle 28 18
No Yes Vicugna pacos 69_1 Alpaca 16 9
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 15 9
No Yes Mustela putorius furo 69_1.0 Domestic ferret 20 12
No Yes Ailuropoda melanoleuca 69_1 Giant panda 25 14
No Yes Canis familiaris 69_3.1 Dog 25 15
No Yes Felis catus 69 Domestic cat 19 11
No Yes Equus caballus 69_2 Horse 25 15
No Yes Myotis lucifugus 69_2.0 Little brown bat 24 15
No Yes Pteropus vampyrus 69_1 Large flying fox 20 12
No Yes Sorex araneus 69_1 European shrew 11 8
No Yes Erinaceus europaeus 69 Western European hedgehog 17 8
No Yes Procavia capensis 69_1 Cape rock hyrax 22 13
No Yes Loxodonta africana 69_3 African savanna elephant 27 15
No Yes Echinops telfairi 69 Small Madagascar hedgehog 24 14
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 19 13
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 6 3
No Yes Macropus eugenii 69_1.0 Tammar wallaby 14 8
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 24 14
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 23 12
No Yes Ornithorhynchus anatinus 69_5 Platypus 13 8
No Yes Petromyzon marinus 69_7.0 Sea lamprey 4 3
No Yes Meleagris gallopavo 69_2 Turkey 16 8
No Yes Gallus gallus 69_2 Chicken 21 11
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 12 7
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 11 6
No Yes Anolis carolinensis 69_2.0 Green anole 18 10
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 13 7
No Yes Latimeria chalumnae 69_1 Coelacanth 6 3
No Yes Gadus morhua 69_1 Atlantic cod 12 6
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 7 4
No Yes Takifugu rubripes 69_4 Torafugu 8 4
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 10 5
No Yes Oryzias latipes 69_1 Japanese medaka 8 4
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 8 4
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 9 5
No Yes Danio rerio 69_9 Zebrafish 6 3
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 4 3
No Yes Ciona intestinalis 69 Vase tunicate 11 8
No Yes Drosophila melanogaster 69_5 Fruit fly 1 1
No Yes Caenorhabditis elegans 69_215 Roundworm 23 14
No Yes Arabidopsis thaliana 10 Thale cress 4 2
No Yes 6_Upper_euphotic (meta-genome)   2 2
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   7232 4243
No Yes Protozoadb 2010_08 (Protozoadb)   40 35
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   729 450
No Yes Uniprot 2018_03 genome   7625 4980
No Yes NCBI plasmid sequences (Plasmids)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   4 2
No Yes Protein Data Bank (all PDB sequenc)   48 41
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   46 46
No Yes TargetDB (Targets)   45 27

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