SUPERFAMILY 1.75 HMM library and genome assignments server

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Hect, E3 ligase catalytic domain superfamily domain assignments
in
Brachybacterium faecium DSM 4810


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Select to display   Genome       Domains   Proteins
No Yes ALL   69593 69593
No Yes Homo sapiens 76_38 Human 99 98
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 26 26
No Yes Gorilla gorilla 76_3.1 Western gorilla 38 38
No Yes Pongo abelii 76_2 Sumatran orangutan 32 32
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 30 30
No Yes Papio anubis 76 Olive baboon 31 31
No Yes Macaca mulatta 76_1 Rhesus monkey 47 47
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 66 66
No Yes Otolemur garnettii 76_3 Small-eared galago 28 28
No Yes Microcebus murinus 76_1 Gray mouse lemur 28 23
No Yes Rattus norvegicus 76_5.0 Norway rat 27 27
No Yes Mus musculus 76_38 House mouse 49 49
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 26 25
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 24 24
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 29 29
No Yes Cavia porcellus 76_3 Domestic guinea pig 27 27
No Yes Oryctolagus cuniculus 76_2 Rabbit 29 29
No Yes Ochotona princeps 76 American pika 30 28
No Yes Tupaia belangeri 76 Northern tree shrew 33 27
No Yes Sus scrofa 76_10.2 Pig 35 35
No Yes Bos taurus 76_3.1 Cattle 30 30
No Yes Ovis aries 76_3.1 Sheep 34 34
No Yes Vicugna pacos 76_1 Alpaca 29 26
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 32 28
No Yes Mustela putorius furo 76_1.0 Domestic ferret 29 29
No Yes Ailuropoda melanoleuca 76_1 Giant panda 32 32
No Yes Canis familiaris 76_3.1 Dog 42 42
No Yes Felis catus 76_6.2 Domestic cat 29 29
No Yes Equus caballus 76_2 Horse 36 36
No Yes Myotis lucifugus 76_2.0 Little brown bat 30 30
No Yes Pteropus vampyrus 76_1 Large flying fox 30 28
No Yes Sorex araneus 76_1 European shrew 35 26
No Yes Erinaceus europaeus 76 Western European hedgehog 32 27
No Yes Procavia capensis 76_1 Cape rock hyrax 32 28
No Yes Loxodonta africana 76_3 African savanna elephant 43 43
No Yes Echinops telfairi 76 Small Madagascar hedgehog 31 25
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 34 34
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 32 27
No Yes Macropus eugenii 76_1.0 Tammar wallaby 28 24
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 34 34
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 28 28
No Yes Ornithorhynchus anatinus 76_5 Platypus 36 35
No Yes Saccoglossus kowalevskii v3.0   106 102
No Yes Petromyzon marinus 76_7.0 Sea lamprey 10 10
No Yes Meleagris gallopavo 76_2 Turkey 28 28
No Yes Gallus gallus 76_4 Chicken 29 29
No Yes Anas platyrhynchos 76_1.0 Mallard 26 26
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 31 31
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 27 27
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 36 36
No Yes Anolis carolinensis 76_2.0 Green anole 27 27
No Yes Xenopus laevis African clawed frog 30 30
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 36 36
No Yes Latimeria chalumnae 76_1 Coelacanth 40 40
No Yes Lepisosteus oculatus 76 Spotted gar 48 48
No Yes Gadus morhua 76_1 Atlantic cod 58 54
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 44 44
No Yes Takifugu rubripes 76_4 Torafugu 94 94
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 46 46
No Yes Oryzias latipes 76_1 Japanese medaka 45 45
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 34 34
No Yes Poecilia formosa 76 Amazon molly 37 36
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 58 58
No Yes Astyanax mexicanus 76 Mexican tetra 42 42
No Yes Danio rerio 76_9 Zebrafish 57 57
No Yes Oikopleura dioica   14 14
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 44 44
No Yes Ciona intestinalis 76 Vase tunicate 17 17
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 64 60
No Yes Adineta vaga   47 47
No Yes Octopus bimaculoides 280   30 30
No Yes Crassostrea gigas 22 Pacific oyster 36 35
No Yes Lottia gigantea Owl limpet 25 25
No Yes Helobdella robusta   17 17
No Yes Capitella sp. I   38 38
No Yes Danaus plexippus OGS1.0 Monarch butterfly 14 14
No Yes Heliconius melpomene Postman butterfly 14 14
No Yes Bombyx mori Domestic silkworm 16 15
No Yes Nasonia vitripennis Jewel wasp 11 11
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 31 31
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 14 14
No Yes Linepithema humile v1.1 Argentine ant 15 15
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 14 14
No Yes Solenopsis invicta v.2.2.3 Red fire ant 18 18
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 14 14
No Yes Atta cephalotes v1.1   14 14
No Yes Camponotus floridanus v3.3 Florida carpenter ant 14 14
No Yes Lucilia cuprina Australian sheep blowfly 17 16
No Yes Drosophila grimshawi 1.3   16 16
No Yes Drosophila willistoni 1.3   15 15
No Yes Drosophila pseudoobscura 2.13   15 15
No Yes Drosophila persimilis 1.3   17 17
No Yes Drosophila suzukii   15 14
No Yes Drosophila yakuba 1.3   14 14
No Yes Drosophila simulans 1.3   13 13
No Yes Drosophila sechellia 1.3   13 13
No Yes Drosophila melanogaster 76_5 Fruit fly 42 42
No Yes Drosophila erecta 1.3   15 15
No Yes Drosophila ananassae 1.3   14 14
No Yes Drosophila virilis 1.2   13 13
No Yes Drosophila mojavensis 1.3   14 14
No Yes Megaselia scalaris 22   9 9
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 16 15
No Yes Culex pipiens quinquefasciatus Southern house mosquito 18 17
No Yes Anopheles darlingi 22 American malaria mosquito 17 17
No Yes Anopheles gambiae 49_3j African malaria mosquito 16 15
No Yes Tribolium castaneum 3.0 Red flour beetle 16 16
No Yes Pediculus humanus corporis (Early assembly) Human body louse 14 14
No Yes Acyrthosiphon pisum Pea aphid 14 14
No Yes Rhodnius prolixus 22   15 15
No Yes Daphnia pulex Common water flea 27 27
No Yes Strigamia maritima 22   21 21
No Yes Sarcoptes scabiei   11 11
No Yes Tetranychus urticae Two-spotted spider mite 14 14
No Yes Ixodes scapularis (Preliminary) Black-legged tick 9 9
No Yes Pristionchus pacificus   12 12
No Yes Meloidogyne incognita Southern root-knot nematode 21 21
No Yes Meloidogyne hapla   3 3
No Yes Onchocerca volvulus 22   10 10
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 24 24
No Yes Caenorhabditis japonica   8 8
No Yes Caenorhabditis brenneri   13 13
No Yes Caenorhabditis remanei   10 10
No Yes Caenorhabditis elegans 76_235 Roundworm 18 18
No Yes Caenorhabditis briggsae 2   9 9
No Yes Trichinella spiralis 22   8 8
No Yes Hymenolepis microstoma   19 19
No Yes Echinococcus multilocularis   12 12
No Yes Echinococcus granulosus   13 12
No Yes Taenia solium Pork tapeworm 15 15
No Yes Schistosoma mansoni   18 17
No Yes Mnemiopsis leidyi Sea walnut 17 17
No Yes Thelohanellus kitauei   4 4
No Yes Acropora digitifera v1.0   71 69
No Yes Nematostella vectensis 1.0 Starlet sea anemone 33 33
No Yes Hydra vulgaris   23 23
No Yes Amphimedon queenslandica   76 75
No Yes Trichoplax adhaerens   19 19
No Yes Proterospongia sp. ATCC 50818   20 20
No Yes Monosiga brevicollis   21 21
No Yes Sphaeroforma arctica JP610   14 14
No Yes Capsaspora owczarzaki ATCC 30864   18 18
No Yes Conidiobolus coronatus NRRL28638 v1.0   6 6
No Yes Mortierella verticillata NRRL 6337   10 10
No Yes Phycomyces blakesleeanus   9 9
No Yes Rhizopus oryzae RA 99-880   12 12
No Yes Mucor circinelloides   10 10
No Yes Rhizomucor miehei CAU432   9 9
No Yes Malassezia globosa CBS 7966   10 10
No Yes Sporisorium reilianum 22   5 5
No Yes Ustilago maydis   5 5
No Yes Mixia osmundae IAM 14324 v1.0   4 4
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   5 5
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   7 7
No Yes Melampsora laricis-populina   5 5
No Yes Rhodotorula graminis WP1 v1.0   6 6
No Yes Sporobolomyces roseus IAM 13481   6 6
No Yes Microbotryum violaceum 22   4 4
No Yes Wallemia sebi v1.0   4 4
No Yes Sphaerobolus stellatus v1.0   4 4
No Yes Piloderma croceum F 1598 v1.0   9 9
No Yes Serpula lacrymans var. lacrymans S7.9   4 4
No Yes Coniophora puteana   5 5
No Yes Hydnomerulius pinastri v2.0   5 5
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   6 6
No Yes Pisolithus microcarpus 441 v1.0   6 6
No Yes Pisolithus tinctorius Marx 270 v1.0   6 6
No Yes Scleroderma citrinum Foug A v1.0   5 5
No Yes Coprinopsis cinerea okayama7 130 v3   5 5
No Yes Pleurotus ostreatus Oyster mushroom 5 5
No Yes Amanita thiersii Skay4041 v1.0   5 5
No Yes Amanita muscaria Koide v1.0 Fly agaric 5 5
No Yes Galerina marginata v1.0   18 18
No Yes Hebeloma cylindrosporum h7 v2.0   6 6
No Yes Laccaria bicolor S238N-H82   6 6
No Yes Agaricus bisporus var. bisporus   7 6
No Yes Schizophyllum commune   6 6
No Yes Stereum hirsutum FP-91666 SS1 v1.0   5 5
No Yes Heterobasidion annosum   5 5
No Yes Gloeophyllum trabeumv1.0   5 5
No Yes Punctularia strigosozonata v1.0   4 4
No Yes Sebacina vermifera MAFF 305830 v1.0   10 10
No Yes Fomitiporia mediterranea v1.0   6 6
No Yes Tulasnella calospora AL13/4D v1.0   4 4
No Yes Postia placenta   6 6
No Yes Wolfiporia cocos MD-104 SS10 v1.0   4 4
No Yes Fomitopsis pinicolav1.0   4 4
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   4 4
No Yes Phanerochaete chrysosporium RP-78 2.1   4 4
No Yes Dichomitus squalens   4 4
No Yes Trametes versicolor v1.0   4 4
No Yes Tremella mesenterica Witches' butter 4 4
No Yes Daldinia eschscholzii EC12 v1.0   6 6
No Yes Apiospora montagnei NRRL 25634 v1.0   6 6
No Yes Magnaporthe poae ATCC 64411 22   4 4
No Yes Magnaporthe grisea 70-15   6 6
No Yes Podospora anserina   6 6
No Yes Sporotrichum thermophile ATCC 42464   6 6
No Yes Thielavia terrestris NRRL 8126   6 6
No Yes Chaetomium globosum CBS 148.51   7 6
No Yes Neurospora tetrasperma   7 6
No Yes Neurospora discreta FGSC 8579   7 6
No Yes Neurospora crassa OR74A   7 6
No Yes Cryphonectria parasitica Chestnut blight fungus 6 6
No Yes Verticillium albo-atrum VaMs.102   6 6
No Yes Verticillium dahliae VdLs.17   6 6
No Yes Acremonium alcalophilumv 1.0   6 6
No Yes Glomerella graminicola 22   6 6
No Yes Fusarium graminearum   6 6
No Yes Nectria haematococca mpVI   6 6
No Yes Fusarium oxysporum f. sp. lycopersici 4286   6 6
No Yes Fusarium verticillioides 7600   6 6
No Yes Trichoderma asperellum CBS 433.97 v1.0   6 6
No Yes Trichoderma atroviride   6 6
No Yes Trichoderma citrinoviride v1.0   6 6
No Yes Trichoderma reesei 1.2   6 6
No Yes Trichoderma virens Gv29-8   6 6
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   6 6
No Yes Trichoderma harzianum CBS 226.95 v1.0   6 6
No Yes Amorphotheca resinae v1.0 Creosote fungus 6 6
No Yes Botrytis cinerea B05.10   6 6
No Yes Sclerotinia sclerotiorum   6 6
No Yes Blumeria graminis 22   6 6
No Yes Didymella exigua CBS 183.55 v1.0   5 5
No Yes Leptosphaeria maculans 22   6 6
No Yes Setosphaeria turcica v1.0   5 5
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   5 5
No Yes Cochliobolus victoriae FI3 v1.0   5 5
No Yes Cochliobolus carbonum 26-R-13 v1.0   5 5
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 5 5
No Yes Alternaria brassicicola   5 5
No Yes Cochliobolus lunatus m118 v2.0   5 5
No Yes Pyrenophora teres f. teres 22   5 5
No Yes Pyrenophora tritici-repentis   5 5
No Yes Stagonospora nodorum   5 5
No Yes Mycosphaerella graminicola IPO323   7 7
No Yes Zasmidium cellare ATCC 36951 v1.0   6 6
No Yes Dothistroma septosporum   6 6
No Yes Septoria musiva v1.0   6 6
No Yes Mycosphaerella fijiensis CIRAD86   4 4
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   6 6
No Yes Paracoccidioides brasiliensis Pb18   6 6
No Yes Coccidioides posadasii RMSCC 3488   6 6
No Yes Coccidioides immitis RS   6 6
No Yes Ajellomyces dermatitidis SLH14081   6 6
No Yes Histoplasma capsulatum class NAmI strain WU24   6 6
No Yes Microsporum canis CBS 113480   6 6
No Yes Trichophyton equinum CBS 127.97   5 5
No Yes Trichophyton verrucosum HKI 0517   6 6
No Yes Arthroderma benhamiae CBS 112371   6 6
No Yes Trichophyton tonsurans CBS 112818   6 6
No Yes Trichophyton rubrum CBS 118892   6 6
No Yes Uncinocarpus reesii 1704   6 6
No Yes Aspergillus zonatus v1.0   6 6
No Yes Penicillium chrysogenum Wisconsin 54-1255   6 6
No Yes Penicillium chrysogenum v1.0   6 6
No Yes Aspergillus acidus v1.0   6 6
No Yes Aspergillus fumigatus Af293   6 6
No Yes Aspergillus brasiliensis v1.0   6 6
No Yes Aspergillus nidulans FGSC A4   6 6
No Yes Aspergillus sydowii v1.0   6 6
No Yes Aspergillus versicolor v1.0   6 6
No Yes Aspergillus glaucus   6 6
No Yes Aspergillus carbonarius ITEM 5010   6 6
No Yes Neosartorya fischeri NRRL 181   6 6
No Yes Aspergillus terreus NIH2624   6 6
No Yes Aspergillus tubingensis v1.0   6 6
No Yes Aspergillus wentii v1.0   6 6
No Yes Aspergillus oryzae RIB40   6 6
No Yes Aspergillus niger 22   6 6
No Yes Aspergillus niger ATCC 1015   4 4
No Yes Aspergillus flavus NRRL3357   6 6
No Yes Aspergillus clavatus NRRL 1   6 6
No Yes Penicillium marneffei ATCC 18224   6 6
No Yes Tuber melanosporum Mel28 22   6 6
No Yes Tuber melanosporum Vittad Perigord truffle 6 6
No Yes Hansenula polymorpha v2.0   5 5
No Yes Dekkera bruxellensis CBS 2499 v2.0   5 5
No Yes Pichia membranifaciensv1.0   4 4
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   5 5
No Yes Candida dubliniensis CD36   5 5
No Yes Candida tropicalis MYA-3404   5 5
No Yes Candida parapsilosis   6 6
No Yes Candida albicans SC5314   5 5
No Yes Lodderomyces elongisporus NRRL YB-4239   5 5
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   5 5
No Yes Pichia stipitis CBS 6054   5 5
No Yes Candida guilliermondii ATCC 6260   5 5
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   5 5
No Yes Debaromyces hansenii   5 5
No Yes Wickerhamomyces anomalus   5 5
No Yes Pichia pastoris GS115   5 5
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   4 4
No Yes Yarrowia lipolytica CLIB122   6 6
No Yes Candida lusitaniae ATCC 42720   5 5
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   5 5
No Yes Vanderwaltozyma polyspora DSM 70294   5 5
No Yes Candida glabrata CBS138   5 5
No Yes Kluyveromyces thermotolerans CBS 6340   5 5
No Yes Lachancea kluyveri   5 5
No Yes Kluyveromyces waltii   5 5
No Yes Ashbya gossypii ATCC 10895   5 5
No Yes Zygosaccharomyces rouxii   5 5
No Yes Saccharomyces mikatae MIT   6 6
No Yes Saccharomyces paradoxus MIT   5 5
No Yes Saccharomyces cerevisiae 76 Baker's yeast 5 5
No Yes Saccharomyces bayanus MIT   5 5
No Yes Kluyveromyces lactis   5 5
No Yes Schizosaccharomyces cryophilus OY26 22   7 7
No Yes Schizosaccharomyces octosporus yFS286   7 7
No Yes Schizosaccharomyces japonicus yFS275   8 8
No Yes Schizosaccharomyces pombe Fission yeast 7 7
No Yes Catenaria anguillulae PL171 v1.0   7 7
No Yes Allomyces macrogynus ATCC 38327   17 17
No Yes Spizellomyces punctatus DAOM BR117   7 7
No Yes Dictyostelium discoideum   6 6
No Yes Dictyostelium purpureum   6 6
No Yes Entamoeba dispar 1.2   6 6
No Yes Entamoeba invadens 1.2   5 5
No Yes Entamoeba histolytica 1   6 6
No Yes Selaginella moellendorffii   19 19
No Yes Pinus taeda Loblolly pine 28 23
No Yes Picea abies Norway spruce 6 6
No Yes Eucalyptus grandis v201 Rose gum 13 13
No Yes Theobroma cacao B97-61/B2 v1 Cacao 7 7
No Yes Gossypium raimondii v221   44 44
No Yes Citrus clementina v165   16 16
No Yes Citrus sinensis v154 Sweet orange 22 22
No Yes Thellungiella halophila v173   11 11
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 11 11
No Yes Capsella rubella v183   9 9
No Yes Arabidopsis lyrata Lyrate rockcress 10 10
No Yes Arabidopsis thaliana 10 Thale cress 12 12
No Yes Carica papaya Papaya 9 9
No Yes Medicago truncatula Barrel medic 27 27
No Yes Phaseolus vulgaris v186 French bean 18 18
No Yes Glycine max v109 Soybean 28 28
No Yes Cucumis sativus v122 Cucumber 8 8
No Yes Fragaria vesca Wild strawberry 8 8
No Yes Malus domestica v196 Apple 22 20
No Yes Prunus persica v139 Peach 7 7
No Yes Linum usitatissimum v200 Flax 14 14
No Yes Manihot esculenta v147 Cassava 24 24
No Yes Populus trichocarpa v156 Black cottonwood 17 17
No Yes Vitis vinifera Wine grape 9 9
No Yes Mimulus guttatus v140 Spotted monkey flower 8 8
No Yes Solanum lycopersicum v.2.3 Tomato 20 20
No Yes Solanum tuberosum Potato 26 25
No Yes Actinidia chinensis Hongyang   18 17
No Yes Aquilegia coerulea v195   21 21
No Yes Triticum urartu 22   5 5
No Yes Triticum aestivum 22 Bread wheat 31 31
No Yes Aegilops tauschii 22   11 11
No Yes Brachypodium distachyon Stiff brome 13 13
No Yes Oryza barthii 22 African wild rice 8 8
No Yes Oryza meridionalis 22   14 14
No Yes Oryza glumaepatula 22   13 13
No Yes Oryza glaberrima African rice 8 8
No Yes Oryza punctata 22   9 8
No Yes Oryza nivara 22   11 11
No Yes Oryza brachyantha 22 Malo sina 8 8
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 11 11
No Yes Oryza sativa v193 Rice 11 11
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 15 14
No Yes Panicum virgatum v202 Switchgrass 23 23
No Yes Setaria italica v164 Foxtail millet 11 11
No Yes Zea mays subsp. mays Maize 21 21
No Yes Zea mays v181 Maize 21 21
No Yes Sorghum bicolor Sorghum 12 10
No Yes Musa balbisiana Balbis banana 12 11
No Yes Musa acuminata 22 Wild Malaysian banana 15 15
No Yes Amborella trichopoda 22   8 8
No Yes Physcomitrella patens   12 12
No Yes Coccomyxa subellipsoidea sp. C-169 v2   8 8
No Yes Asterochloris sp. Cgr/DA1pho v1.0   9 8
No Yes Chlorella variabilis sp. NC64A   8 8
No Yes Chlorella vulgaris   8 8
No Yes Volvox carteri f. nagariensis   13 11
No Yes Volvox carteri v199   11 10
No Yes Chlamydomonas reinhardtii 4.0   13 11
No Yes Ostreococcus sp. RCC809   6 6
No Yes Ostreococcus lucimarinus CCE9901   8 8
No Yes Ostreococcus tauri   5 5
No Yes Bathycoccus prasinos   5 4
No Yes Micromonas sp. RCC299   10 9
No Yes Micromonas pusilla CCMP1545 v3.0   10 10
No Yes Cyanidioschyzon merolae strain 10D 22   4 4
No Yes Cyanidioschyzon merolae   4 4
No Yes Porphyridium purpureum 02_2012   4 4
No Yes Thecamonas trahens ATCC 50062   22 22
No Yes Bigelowiella natans CCMP2755 22   33 33
No Yes Giardia lamblia 2.3   6 6
No Yes Cyanophora paradoxa   21 21
No Yes Leishmania mexicana 2.4   13 13
No Yes Leishmania major strain Friedlin   14 13
No Yes Leishmania infantum JPCM5 2.4   12 12
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   13 13
No Yes Trypanosoma vivax   11 11
No Yes Trypanosoma cruzi strain CL Brener   7 7
No Yes Trypanosoma congolense 2.4   12 12
No Yes Trypanosoma brucei gambiense v4.1   11 11
No Yes Trypanosoma brucei TREU927 v4.1   11 11
No Yes Ectocarpus siliculosus   19 19
No Yes Aureococcus anophagefferens   20 20
No Yes Albugo laibachii 22   16 16
No Yes Pythium iwayamai DAOM BR242034 22   67 66
No Yes Pythium arrhenomanes ATCC 12531 22   45 41
No Yes Pythium ultimum v1.7-2   60 58
No Yes Pythium aphanidermatum DAOM BR444 22   41 40
No Yes Pythium irregulare DAOM BR486 22   58 56
No Yes Pythium vexans DAOM BR484 22   38 36
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 32 30
No Yes Phytophthora sojae 1.1   31 30
No Yes Phytophthora infestans T30-4   37 36
No Yes Phytophthora capsici   35 35
No Yes Hyaloperonospora arabidopsidis 22   17 16
No Yes Phaeodactylum tricornutumCCAP 1055/1   10 10
No Yes Fragilariopsis cylindrus   14 14
No Yes Thalassiosira pseudonana CCMP1335   9 9
No Yes Perkinsus marinus ATCC 50983   10 10
No Yes Paramecium tetraurelia   36 35
No Yes Tetrahymena thermophila SB210 1   17 17
No Yes Ichthyophthirius multifiliis strain G5   20 20
No Yes Cryptosporidium hominis   5 5
No Yes Cryptosporidium muris   6 6
No Yes Cryptosporidium parvum Iowa II   6 5
No Yes Neospora caninum   10 9
No Yes Toxoplasma gondii VEG   10 9
No Yes Toxoplasma gondii ME49   10 9
No Yes Toxoplasma gondii GT1   10 9
No Yes Babesia bovis T2Bo   8 8
No Yes Theileria parva   4 4
No Yes Theileria annulata   4 4
No Yes Plasmodium falciparum 3D7   6 4
No Yes Plasmodium vivax SaI-1 7.0   6 4
No Yes Plasmodium knowlesi strain H   7 4
No Yes Plasmodium yoelii ssp. yoelii 1   7 5
No Yes Plasmodium chabaudi   6 4
No Yes Plasmodium berghei ANKA   6 4
No Yes Symbiodinium minutum clade B1 v1.2   43 42
No Yes Naegleria gruberi   11 11
No Yes Trichomonas vaginalis   67 67
No Yes Guillardia theta CCMP2712 v1.0   28 26
No Yes Emiliania huxleyi CCMP1516   35 35
No Yes Waddlia chondrophila WSU 86-1044   1 1
No Yes Simkania negevensis Z   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 47 47
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 34 34
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 17 16
No Yes Ascaris suum Victoria/Ghent Pig roundworm 11 11
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 10 10
No Yes Cryptococcus neoformans var. grubii H99   4 4
No Yes Cryptococcus neoformans B-3501A   4 4
No Yes Cryptococcus neoformans JEC21   3 3
No Yes Paracoccidioides brasiliensis Pb01   6 6
No Yes Paracoccidioides brasiliensis Pb03   6 6
No Yes Coccidioides posadasii str. Silveira   6 6
No Yes Coccidioides immitis RMSCC 3703   4 4
No Yes Coccidioides immitis RMSCC 2394   6 6
No Yes Coccidioides immitis H538.4   5 5
No Yes Ajellomyces dermatitidis ER-3   6 6
No Yes Histoplasma capsulatum H143   6 6
No Yes Histoplasma capsulatum H88   6 6
No Yes Histoplasma capsulatum G186AR   7 7
No Yes Aspergillus fumigatus A1163   6 6
No Yes Candida albicans WO-1   5 5
No Yes Saccharomyces cerevisiae UC5   3 3
No Yes Saccharomyces cerevisiae PW5   4 4
No Yes Saccharomyces cerevisiae CLIB324   1 1
No Yes Saccharomyces cerevisiae CBS7960   2 2
No Yes Saccharomyces cerevisiae YJM269   4 4
No Yes Saccharomyces cerevisiae T7   5 5
No Yes Saccharomyces cerevisiae FostersB   3 3
No Yes Saccharomyces cerevisiae FostersO   4 4
No Yes Saccharomyces cerevisiae VL3   4 4
No Yes Saccharomyces cerevisiae Vin13   4 4
No Yes Saccharomyces cerevisiae LalvinQA23   3 3
No Yes Saccharomyces cerevisiae AWRI796   1 1
No Yes Saccharomyces cerevisiae Sigma1278b   5 5
No Yes Saccharomyces cerevisiae W303   5 5
No Yes Saccharomyces cerevisiae JAY291   5 5
No Yes Saccharomyces cerevisiae AWRI1631   2 2
No Yes Saccharomyces cerevisiae T73   2 2
No Yes Saccharomyces cerevisiae CLIB215   2 2
No Yes Saccharomyces cerevisiae YJM789   5 5
No Yes Saccharomyces cerevisiae YJM789   5 5
No Yes Saccharomyces cerevisiae RM11-1a   4 4
No Yes Saccharomyces cerevisiae RM11-1a   3 3
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 5 5
No Yes Schizosaccharomyces pombe 972h-   7 7
No Yes Batrachochytrium dendrobatidis JEL423   6 6
No Yes Batrachochytrium dendrobatidis JAM81   6 6
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 7 7
No Yes Hordeum vulgare 22 Domesticated barley 29 29
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 8 8
No Yes Trypanosoma brucei Lister 427 v4.1   11 11
No Yes Neospora caninum Nc-Liverpool 6.2   10 9
No Yes Plasmodium falciparum HB3   6 4
No Yes Plasmodium falciparum Dd2   5 3
No Yes Homo sapiens 75_37 (old version GRC) Human 107 106
No Yes Homo sapiens (NCBI version) Human 45 45
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 27 27
No Yes Heliconius numata (Incomplete)   8 8
No Yes Loa loa v3.3 (Request) Eye worm 12 12
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 16 16
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 11 11
No Yes Moniliophthora perniciosa FA553 (Genome survey)   6 6
No Yes Encephalitozoon intestinalis (endoparasite)   2 2
No Yes Encephalitozoon cuniculi (endoparasite)   2 2
No Yes Lotus japonicus (Early assembly)   17 17
No Yes Malus x domestica (Duplicate) Apple 22 20
No Yes Ricinus communis (Early assembly) Castor bean 8 8
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   31 30
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 18 18
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 20 20
No Yes Phoenix dactylifera (Early draft) Date palm 18 17
No Yes Homo sapiens 69_37 Human 30 30
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 26 26
No Yes Gorilla gorilla 69_3.1 Western gorilla 29 29
No Yes Pongo abelii 69_2 Sumatran orangutan 27 27
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 26 26
No Yes Macaca mulatta 69_1 Rhesus monkey 28 28
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 28 28
No Yes Otolemur garnettii 69_3 Small-eared galago 27 27
No Yes Microcebus murinus 69_1 Gray mouse lemur 28 23
No Yes Rattus norvegicus 69_3.4 Norway rat 28 28
No Yes Mus musculus 69_38 House mouse 27 27
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 26 25
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 23 23
No Yes Cavia porcellus 69_3 Domestic guinea pig 27 27
No Yes Oryctolagus cuniculus 69_2 Rabbit 27 27
No Yes Ochotona princeps 69 American pika 30 28
No Yes Tupaia belangeri 69 Northern tree shrew 33 27
No Yes Sus scrofa 69_10.2 Pig 29 29
No Yes Bos taurus 69_3.1 Cattle 28 28
No Yes Vicugna pacos 69_1 Alpaca 29 26
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 32 28
No Yes Mustela putorius furo 69_1.0 Domestic ferret 28 28
No Yes Ailuropoda melanoleuca 69_1 Giant panda 29 29
No Yes Canis familiaris 69_3.1 Dog 28 28
No Yes Felis catus 69 Domestic cat 29 22
No Yes Equus caballus 69_2 Horse 28 28
No Yes Myotis lucifugus 69_2.0 Little brown bat 29 29
No Yes Pteropus vampyrus 69_1 Large flying fox 30 28
No Yes Sorex araneus 69_1 European shrew 35 26
No Yes Erinaceus europaeus 69 Western European hedgehog 32 27
No Yes Procavia capensis 69_1 Cape rock hyrax 32 28
No Yes Loxodonta africana 69_3 African savanna elephant 29 29
No Yes Echinops telfairi 69 Small Madagascar hedgehog 31 25
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 37 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 32 27
No Yes Macropus eugenii 69_1.0 Tammar wallaby 28 24
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 27 27
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 27 27
No Yes Ornithorhynchus anatinus 69_5 Platypus 34 33
No Yes Petromyzon marinus 69_7.0 Sea lamprey 10 10
No Yes Meleagris gallopavo 69_2 Turkey 26 26
No Yes Gallus gallus 69_2 Chicken 30 30
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 31 31
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 27 27
No Yes Anolis carolinensis 69_2.0 Green anole 26 26
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 26 26
No Yes Latimeria chalumnae 69_1 Coelacanth 29 29
No Yes Gadus morhua 69_1 Atlantic cod 41 38
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 36 36
No Yes Takifugu rubripes 69_4 Torafugu 36 36
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 39 39
No Yes Oryzias latipes 69_1 Japanese medaka 38 38
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 34 34
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 38 38
No Yes Danio rerio 69_9 Zebrafish 40 40
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 17 17
No Yes Ciona intestinalis 69 Vase tunicate 16 16
No Yes Drosophila melanogaster 69_5 Fruit fly 14 14
No Yes Caenorhabditis elegans 69_215 Roundworm 9 9
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 5 5
No Yes Arabidopsis thaliana 10 Thale cress 7 7
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   1 1
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   2 2
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   29137 29009
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   3 3
No Yes Protozoadb 2010_08 (Protozoadb)   367 345
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   1791 1750
No Yes Uniprot 2018_03 genome   22384 21957
No Yes Global Ocean Sampling Expedition (GOS)   96 95
No Yes NCBI viral sequences (Viral)   5 5
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   53 53
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   132 132
No Yes TargetDB (Targets)   34 34
No Yes UniProt viral sequences (Viral)   1 1

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