SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Nitrile hydratase alpha chain superfamily domain assignments
in
Sinorhizobium medicae WSM419

Assignment details

(show help)


Sinorhizobium medicae WSM419 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|150397202|ref|YP_001327669.1|   5.62e-85   11-207   Nitrile hydratase alpha chain  
 
Weak hits:
gi|150377491|ref|YP_001314086.1|   0.0902   103-169   Nitrile hydratase alpha chain  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a Nitrile hydratase alpha chain domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   14212 14212
No Yes Adineta vaga   2 2
No Yes Proterospongia sp. ATCC 50818   1 1
No Yes Monosiga brevicollis   1 1
No Yes Sphaeroforma arctica JP610   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Asterochloris sp. Cgr/DA1pho v1.0   2 2
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   1 1
No Yes Aureococcus anophagefferens   1 1
No Yes Fragilariopsis cylindrus   2 2
No Yes Symbiodinium minutum clade B1 v1.2   4 4
No Yes Emiliania huxleyi CCMP1516   4 4
No Yes Pseudanabaena sp. PCC 7367   2 2
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Microcoleus sp. PCC 7113   1 1
No Yes Gloeocapsa sp. PCC 7428   1 1
No Yes Rivularia sp. PCC 7116   1 1
No Yes Anabaena variabilis ATCC 29413   1 1
No Yes Nostoc punctiforme PCC 73102   6 6
No Yes Nostoc sp. PCC 7120   3 3
No Yes Nostoc sp. PCC 7524   1 1
No Yes Rubrobacter xylanophilus DSM 9941   1 1
No Yes Modestobacter marinus   1 1
No Yes Geodermatophilus obscurus DSM 43160   1 1
No Yes Streptomyces violaceusniger Tu 4113   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   1 1
No Yes Pseudonocardia dioxanivorans CB1190   7 7
No Yes Verrucosispora maris AB-18-032   2 2
No Yes Gordonia sp. KTR9   1 1
No Yes Gordonia polyisoprenivorans VH2   1 1
No Yes Rhodococcus jostii RHA1   2 2
No Yes Rhodococcus equi 103S   1 1
No Yes Rhodococcus opacus B4   1 1
No Yes Rhodococcus erythropolis PR4   1 1
No Yes Nocardia farcinica IFM 10152   3 3
No Yes Amycolicicoccus subflavus DQS3-9A1   3 3
No Yes Mycobacterium sp. JLS   1 1
No Yes Mycobacterium intracellulare ATCC 13950   1 1
No Yes Mycobacterium vanbaalenii PYR-1   3 3
No Yes Mycobacterium rhodesiae NBB3   2 2
No Yes Mycobacterium gilvum PYR-GCK   2 2
No Yes Mycobacterium chubuense NBB4   1 1
No Yes Mycobacterium smegmatis str. MC2 155   2 2
No Yes Arthrobacter aurescens TC1   1 1
No Yes Roseiflexus sp. RS-1   1 1
No Yes Roseiflexus castenholzii DSM 13941   1 1
No Yes Chloroflexus sp. MS-G   2 2
No Yes Chloroflexus sp. Y-400-fl   2 2
No Yes Chloroflexus aggregans DSM 9485   1 1
No Yes Chloroflexus aurantiacus J-10-fl   2 2
No Yes Pelotomaculum thermopropionicum SI   13 13
No Yes Desulfosporosinus orientis DSM 765   3 3
No Yes Syntrophomonas wolfei subsp. wolfei str. Goettingen   1 1
No Yes Clostridium sp. BNL1100   1 1
No Yes Paenibacillus sp. JDR-2   1 1
No Yes Paenibacillus terrae HPL-003   1 1
No Yes Chlorobium luteolum DSM 273   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   2 2
No Yes Simkania negevensis Z   1 1
No Yes Desulfarculus baarsii DSM 2075   1 1
No Yes Syntrophus aciditrophicus SB   1 1
No Yes Desulfomonile tiedjei DSM 6799   1 1
No Yes Desulfovibrio magneticus RS-1   1 1
No Yes Haliangium ochraceum DSM 14365   2 2
No Yes Sorangium cellulosum 'So ce 56'   3 3
No Yes Stigmatella aurantiaca DW4/3-1   1 1
No Yes Corallococcus coralloides DSM 2259   2 2
No Yes Burkholderia phytofirmans PsJN   2 2
No Yes Burkholderia sp. RPE64   1 1
No Yes Burkholderia thailandensis E264   3 3
No Yes Burkholderia pseudomallei 1106a   3 3
No Yes Burkholderia mallei SAVP1   2 2
No Yes Burkholderia ambifaria AMMD   3 3
No Yes Burkholderia cenocepacia HI2424   3 3
No Yes Burkholderia gladioli BSR3   1 1
No Yes Variovorax paradoxus S110   2 2
No Yes Acidovorax avenae subsp. avenae ATCC 19860   1 1
No Yes Herbaspirillum seropedicae SmR1   1 1
No Yes Bordetella petrii DSM 12804   1 1
No Yes Dinoroseobacter shibae DFL 12   1 1
No Yes Phaeobacter gallaeciensis 2.10   1 1
No Yes Pseudovibrio sp. FO-BEG1   2 2
No Yes Ruegeria sp. TM1040   1 1
No Yes Ruegeria pomeroyi DSS-3   1 1
No Yes Roseobacter litoralis Och 149   2 2
No Yes Roseobacter denitrificans OCh 114   1 1
No Yes Rhodobacter sphaeroides ATCC 17029   1 1
No Yes Tistrella mobilis KA081020-065   13 13
No Yes Azospirillum sp. B510   8 8
No Yes Azospirillum brasilense Sp245   1 1
No Yes Acidiphilium multivorum AIU301   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Polymorphum gilvum SL003B-26A1   1 1
No Yes Candidatus Puniceispirillum marinum IMCC1322   2 2
No Yes Azorhizobium caulinodans ORS 571   2 2
No Yes Methylobacterium sp. 4-46   2 2
No Yes Methylobacterium populi BJ001   2 2
No Yes Methylobacterium nodulans ORS 2060   1 1
No Yes Methylobacterium radiotolerans JCM 2831   1 1
No Yes Sinorhizobium fredii NGR234   1 1
No Yes Sinorhizobium medicae WSM419   1 1
No Yes Sinorhizobium meliloti AK83   1 1
No Yes Genome sequence of Rhizobium sp. strain IRBG74   1 1
No Yes Rhizobium etli CIAT 652   1 1
No Yes Rhizobium leguminosarum bv. viciae 3841   2 2
No Yes Agrobacterium radiobacter K84   1 1
No Yes Mesorhizobium opportunistum WSM2075   1 1
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   1 1
No Yes Mesorhizobium loti MAFF303099   1 1
No Yes Methylocella silvestris BL2   1 1
No Yes Rhodomicrobium vannielii ATCC 17100   1 1
No Yes Bradyrhizobium japonicum USDA 110   1 1
No Yes Bradyrhizobium sp. ORS 278   1 1
No Yes Pantoea sp. At-9b   1 1
No Yes Pantoea vagans C9-1   1 1
No Yes Klebsiella oxytoca E718   1 1
No Yes Klebsiella variicola At-22   1 1
No Yes Pseudomonas sp. TKP   1 1
No Yes Pseudomonas sp. UW4   1 1
No Yes Pseudomonas putida F1   1 1
No Yes Pseudomonas fluorescens SBW25   1 1
No Yes Acinetobacter oleivorans DR1   1 1
No Yes Acinetobacter sp. ADP1   1 1
No Yes Francisella philomiragia subsp. philomiragia ATCC 25017   2 2
No Yes Francisella tularensis subsp. tularensis WY96-3418   2 2
No Yes Francisella cf. novicida 3523   2 2
No Yes Francisella novicida U112   2 2
No Yes halophilic archaeon DL31   1 1
No Yes Methanoplanus petrolearius DSM 11571   2 2
No Yes Chroococcidiopsis thermalis PCC 7203   2 1
No Yes Chamaesiphon minutus PCC 6605   2 2
No Yes Synechococcus sp. PCC 7002   1 1
No Yes Oscillatoria acuminata PCC 6304   2 2
No Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327   1 1
No Yes Streptomyces rapamycinicus NRRL 5491   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   1 1
No Yes Rhodococcus erythropolis CCM2595   1 1
No Yes Nocardia brasiliensis ATCC 700358   1 1
No Yes Mycobacterium sp. MOTT36Y   1 1
No Yes Mycobacterium sp. KMS   1 1
No Yes Mycobacterium sp. MCS   1 1
No Yes Mycobacterium yongonense 05-1390   1 1
No Yes Mycobacterium intracellulare MOTT-64   1 1
No Yes Mycobacterium indicus pranii MTCC 9506   1 1
No Yes Mycobacterium intracellulare MOTT-02   1 1
No Yes Mycobacterium gilvum Spyr1   2 2
No Yes Mycobacterium smegmatis str. MC2 155   2 2
No Yes Mycobacterium kansasii ATCC 12478   2 2
No Yes Desulfotomaculum gibsoniae DSM 7213   2 2
No Yes Thermobacillus composti KWC4   1 1
No Yes Paenibacillus sp. Y412MC10   1 1
No Yes Paenibacillus polymyxa CR1   1 1
No Yes Paenibacillus polymyxa SC2   1 1
No Yes Paenibacillus polymyxa E681   1 1
No Yes Sorangium cellulosum So0157-2   1 1
No Yes Burkholderia phenoliruptrix BR3459a   1 1
No Yes Ralstonia solanacearum PSI07   1 1
No Yes Burkholderia sp. YI23   1 1
No Yes Burkholderia thailandensis MSMB121   2 2
No Yes Burkholderia pseudomallei MSHR305   3 3
No Yes Burkholderia pseudomallei NCTC 13179   3 3
No Yes Burkholderia pseudomallei BPC006   3 3
No Yes Burkholderia pseudomallei 1026b   3 3
No Yes Burkholderia pseudomallei MSHR346   2 2
No Yes Burkholderia pseudomallei 668   3 3
No Yes Burkholderia pseudomallei 1710b   1 1
No Yes Burkholderia pseudomallei K96243   3 3
No Yes Burkholderia mallei NCTC 10229   2 2
No Yes Burkholderia mallei NCTC 10247   2 2
No Yes Burkholderia mallei ATCC 23344   1 1
No Yes Burkholderia ambifaria MC40-6   3 3
No Yes Burkholderia cenocepacia MC0-3   3 3
No Yes Burkholderia cenocepacia AU 1054   3 3
No Yes Burkholderia cenocepacia J2315   2 2
No Yes Variovorax paradoxus B4   1 1
No Yes Variovorax paradoxus EPS   1 1
No Yes Phaeobacter gallaeciensis DSM 17395   1 1
No Yes Phaeobacter gallaeciensis DSM 26640   1 1
No Yes Leisingera methylohalidivorans DSM 14336   1 1
No Yes Octadecabacter antarcticus 307   1 1
No Yes Octadecabacter arcticus 238   2 2
No Yes Rhodobacter sphaeroides KD131   1 1
No Yes Rhodobacter sphaeroides ATCC 17025   1 1
No Yes Rhodobacter sphaeroides 2.4.1   1 1
No Yes Sinorhizobium fredii USDA 257   1 1
No Yes Sinorhizobium fredii HH103   1 1
No Yes Sinorhizobium meliloti 2011   1 1
No Yes Sinorhizobium meliloti GR4   1 1
No Yes Sinorhizobium meliloti Rm41   1 1
No Yes Sinorhizobium meliloti SM11   1 1
No Yes Sinorhizobium meliloti BL225C   1 1
No Yes Sinorhizobium meliloti 1021   1 1
No Yes Rhizobium etli CFN 42   1 1
No Yes Rhizobium etli bv. mimosae str. Mim1   1 1
No Yes Rhizobium tropici CIAT 899   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   2 2
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   3 3
No Yes Mesorhizobium australicum WSM2073   1 1
No Yes Rhodopseudomonas palustris DX-1   1 1
No Yes Rhodopseudomonas palustris TIE-1   1 1
No Yes Rhodopseudomonas palustris HaA2   1 1
No Yes Rhodopseudomonas palustris BisB5   1 1
No Yes Rhodopseudomonas palustris BisB18   1 1
No Yes Rhodopseudomonas palustris CGA009   1 1
No Yes Bradyrhizobium sp. S23321   2 2
No Yes Bradyrhizobium sp. BTAi1   1 1
No Yes Bradyrhizobium oligotrophicum S58   1 1
No Yes Bradyrhizobium japonicum USDA 6   1 1
No Yes Legionella pneumophila str. Paris   1 1
No Yes Legionella pneumophila subsp. pneumophila   1 1
No Yes Serratia plymuthica S13   1 1
No Yes Klebsiella oxytoca KCTC 1686   1 1
No Yes Klebsiella pneumoniae 342   1 1
No Yes Pseudomonas putida BIRD-1   1 1
No Yes Pseudomonas putida ND6   1 1
No Yes Francisella tularensis subsp. mediasiatica FSC147   1 1
No Yes Francisella tularensis subsp. holarctica F92   2 2
No Yes Francisella tularensis subsp. holarctica FTNF002-00   2 2
No Yes Francisella tularensis subsp. holarctica OSU18   2 2
No Yes Francisella tularensis subsp. holarctica LVS   2 2
No Yes Francisella tularensis subsp. holarctica FSC200   2 2
No Yes Francisella tularensis subsp. tularensis TIGB03   1 1
No Yes Francisella tularensis subsp. tularensis TI0902   1 1
No Yes Francisella tularensis subsp. tularensis NE061598   1 1
No Yes Francisella tularensis subsp. tularensis FSC198   1 1
No Yes Francisella tularensis subsp. tularensis SCHU S4   1 1
No Yes Francisella cf. novicida Fx1   2 2
No Yes Ricinus communis (Early assembly) Castor bean 2 2
No Yes 1_Upper_euphotic (meta-genome)   2 2
No Yes 2_050719S (meta-genome)   1 1
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   4 4
No Yes 4_Deep_abyss (meta-genome)   2 2
No Yes 5_050719P (meta-genome)   3 3
No Yes 6_Upper_euphotic (meta-genome)   3 3
No Yes 7_Oxygen_minimum_layer (meta-genome)   2 2
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   2 2
No Yes Combined (meta-genome)   6 6
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   2 2
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   6 6
No Yes Dump top (Dump top) (meta-genome)   9 9
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   2 2
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   5 5
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   7 4
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   6 6
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   4 4
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   7 7
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   3 3
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   8 8
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   4 4
No Yes NCBI 2017_08 genome   8522 8505
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   11 11
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   1 1
No Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)   1 1
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   12 12
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   5 5
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   6 6
No Yes Sludge/US, Phrap Assembly (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 8
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   14 14
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   41 41
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   22 22
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   27 27
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   28 28
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   25 25
No Yes STRING v9.0.5 (STRING)   167 167
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   2 2
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   18 18
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   2 2
No Yes Uniprot 2018_03 genome   3650 3616
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   8 8
No Yes Global Ocean Sampling Expedition (GOS)   361 361
No Yes NCBI plasmid sequences (Plasmids)   26 26
No Yes PDB chains (SCOP 1.75) (PDB)   8 8
No Yes Protein Data Bank (all PDB sequenc)   126 125
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   292 292
No Yes TargetDB (Targets)   14 7

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]