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Purple acid phosphatase-like family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 6 significant domains in 6 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1kbpA   4.74e-81   0.000000000184   129-410   4kbp A:121-432  
1qfcA   8.13e-77   0.0000000000318   6-303   1qhw A:  
1qhwA   1.09e-76   0.0000000000318   27-324   1qhw A:  
1uteA   2.6e-80   0.0000000000351   6-302   1ute A:  
1xzwA   1.29e-79   0.000000000149   129-410   1xzw A:120-424  
2qfrA   4.02e-81   0.000000000184   121-402   4kbp A:121-432  

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Select to display   Genome       Domains   Proteins
No Yes ALL   7693 7693
No Yes Homo sapiens 76_38 Human 5 5
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 1 1
No Yes Gorilla gorilla 76_3.1 Western gorilla 1 1
No Yes Pongo abelii 76_2 Sumatran orangutan 1 1
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 2 2
No Yes Papio anubis 76 Olive baboon 1 1
No Yes Macaca mulatta 76_1 Rhesus monkey 1 1
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 3 3
No Yes Otolemur garnettii 76_3 Small-eared galago 1 1
No Yes Microcebus murinus 76_1 Gray mouse lemur 1 1
No Yes Rattus norvegicus 76_5.0 Norway rat 2 2
No Yes Mus musculus 76_38 House mouse 3 3
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 1 1
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 1 1
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 1 1
No Yes Cavia porcellus 76_3 Domestic guinea pig 1 1
No Yes Ochotona princeps 76 American pika 1 1
No Yes Tupaia belangeri 76 Northern tree shrew 1 1
No Yes Sus scrofa 76_10.2 Pig 1 1
No Yes Bos taurus 76_3.1 Cattle 1 1
No Yes Ovis aries 76_3.1 Sheep 1 1
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 1 1
No Yes Mustela putorius furo 76_1.0 Domestic ferret 1 1
No Yes Ailuropoda melanoleuca 76_1 Giant panda 1 1
No Yes Canis familiaris 76_3.1 Dog 1 1
No Yes Felis catus 76_6.2 Domestic cat 1 1
No Yes Equus caballus 76_2 Horse 1 1
No Yes Myotis lucifugus 76_2.0 Little brown bat 1 1
No Yes Pteropus vampyrus 76_1 Large flying fox 1 1
No Yes Sorex araneus 76_1 European shrew 1 1
No Yes Procavia capensis 76_1 Cape rock hyrax 1 1
No Yes Loxodonta africana 76_3 African savanna elephant 2 2
No Yes Echinops telfairi 76 Small Madagascar hedgehog 1 1
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 1 1
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 1 1
No Yes Macropus eugenii 76_1.0 Tammar wallaby 1 1
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 2 1
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 1 1
No Yes Ornithorhynchus anatinus 76_5 Platypus 1 1
No Yes Saccoglossus kowalevskii v3.0   3 3
No Yes Petromyzon marinus 76_7.0 Sea lamprey 1 1
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 1 1
No Yes Anolis carolinensis 76_2.0 Green anole 1 1
No Yes Xenopus laevis African clawed frog 4 4
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 1 1
No Yes Latimeria chalumnae 76_1 Coelacanth 1 1
No Yes Lepisosteus oculatus 76 Spotted gar 2 2
No Yes Gadus morhua 76_1 Atlantic cod 4 4
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 3 3
No Yes Takifugu rubripes 76_4 Torafugu 3 3
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 1 1
No Yes Oryzias latipes 76_1 Japanese medaka 1 1
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 1 1
No Yes Poecilia formosa 76 Amazon molly 1 1
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 2 2
No Yes Astyanax mexicanus 76 Mexican tetra 2 2
No Yes Danio rerio 76_9 Zebrafish 4 4
No Yes Oikopleura dioica   3 3
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 3 3
No Yes Ciona intestinalis 76 Vase tunicate 3 3
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 3 3
No Yes Adineta vaga   7 7
No Yes Crassostrea gigas 22 Pacific oyster 1 1
No Yes Lottia gigantea Owl limpet 4 4
No Yes Capitella sp. I   1 1
No Yes Ixodes scapularis (Preliminary) Black-legged tick 1 1
No Yes Pristionchus pacificus   1 1
No Yes Meloidogyne incognita Southern root-knot nematode 1 1
No Yes Onchocerca volvulus 22   1 1
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 1 1
No Yes Caenorhabditis brenneri   2 2
No Yes Caenorhabditis remanei   1 1
No Yes Caenorhabditis elegans 76_235 Roundworm 1 1
No Yes Caenorhabditis briggsae 2   1 1
No Yes Acropora digitifera v1.0   3 3
No Yes Nematostella vectensis 1.0 Starlet sea anemone 3 3
No Yes Hydra vulgaris   2 2
No Yes Amphimedon queenslandica   3 3
No Yes Proterospongia sp. ATCC 50818   4 4
No Yes Monosiga brevicollis   3 3
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Selaginella moellendorffii   16 16
No Yes Pinus taeda Loblolly pine 28 26
No Yes Picea abies Norway spruce 16 15
No Yes Eucalyptus grandis v201 Rose gum 24 24
No Yes Theobroma cacao B97-61/B2 v1 Cacao 12 12
No Yes Gossypium raimondii v221   52 52
No Yes Citrus clementina v165   23 23
No Yes Citrus sinensis v154 Sweet orange 25 25
No Yes Thellungiella halophila v173   16 15
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 19 19
No Yes Capsella rubella v183   14 14
No Yes Arabidopsis lyrata Lyrate rockcress 15 15
No Yes Arabidopsis thaliana 10 Thale cress 19 19
No Yes Carica papaya Papaya 9 9
No Yes Medicago truncatula Barrel medic 14 14
No Yes Phaseolus vulgaris v186 French bean 15 15
No Yes Glycine max v109 Soybean 27 26
No Yes Cucumis sativus v122 Cucumber 8 8
No Yes Fragaria vesca Wild strawberry 11 11
No Yes Malus domestica v196 Apple 16 16
No Yes Prunus persica v139 Peach 15 15
No Yes Linum usitatissimum v200 Flax 24 23
No Yes Manihot esculenta v147 Cassava 16 16
No Yes Populus trichocarpa v156 Black cottonwood 22 22
No Yes Vitis vinifera Wine grape 14 13
No Yes Mimulus guttatus v140 Spotted monkey flower 14 14
No Yes Solanum lycopersicum v.2.3 Tomato 12 12
No Yes Solanum tuberosum Potato 21 21
No Yes Actinidia chinensis Hongyang   14 14
No Yes Aquilegia coerulea v195   21 21
No Yes Triticum urartu 22   10 10
No Yes Triticum aestivum 22 Bread wheat 26 26
No Yes Aegilops tauschii 22   8 8
No Yes Brachypodium distachyon Stiff brome 13 13
No Yes Oryza barthii 22 African wild rice 17 15
No Yes Oryza meridionalis 22   16 15
No Yes Oryza glumaepatula 22   24 22
No Yes Oryza glaberrima African rice 11 11
No Yes Oryza punctata 22   14 13
No Yes Oryza nivara 22   23 21
No Yes Oryza brachyantha 22 Malo sina 8 8
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 17 17
No Yes Oryza sativa v193 Rice 17 17
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 9 9
No Yes Panicum virgatum v202 Switchgrass 24 24
No Yes Setaria italica v164 Foxtail millet 13 13
No Yes Zea mays subsp. mays Maize 15 15
No Yes Zea mays v181 Maize 16 16
No Yes Sorghum bicolor Sorghum 10 10
No Yes Musa balbisiana Balbis banana 12 12
No Yes Musa acuminata 22 Wild Malaysian banana 11 11
No Yes Amborella trichopoda 22   8 8
No Yes Physcomitrella patens   9 9
No Yes Coccomyxa subellipsoidea sp. C-169 v2   5 5
No Yes Asterochloris sp. Cgr/DA1pho v1.0   5 5
No Yes Chlorella variabilis sp. NC64A   1 1
No Yes Chlorella vulgaris   5 5
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   2 2
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Ostreococcus sp. RCC809   1 1
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   1 1
No Yes Bathycoccus prasinos   1 1
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Cyanidioschyzon merolae strain 10D 22   2 2
No Yes Cyanidioschyzon merolae   2 2
No Yes Bigelowiella natans CCMP2755 22   4 4
No Yes Ectocarpus siliculosus   2 2
No Yes Aureococcus anophagefferens   2 2
No Yes Albugo laibachii 22   1 1
No Yes Pythium iwayamai DAOM BR242034 22   2 2
No Yes Pythium arrhenomanes ATCC 12531 22   2 2
No Yes Pythium ultimum v1.7-2   2 2
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   3 3
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Phytophthora capsici   1 1
No Yes Hyaloperonospora arabidopsidis 22   1 1
No Yes Phaeodactylum tricornutumCCAP 1055/1   1 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Symbiodinium minutum clade B1 v1.2   1 1
No Yes Naegleria gruberi   2 2
No Yes Guillardia theta CCMP2712 v1.0   3 3
No Yes Emiliania huxleyi CCMP1516   6 6
No Yes Fibrella aestuarina   1 1
No Yes Bacteroides thetaiotaomicron VPI-5482   1 1
No Yes Weeksella virosa DSM 16922   1 1
No Yes Granulicella mallensis MP5ACTX8   1 1
No Yes Terriglobus roseus DSM 18391   1 1
No Yes Caulobacter sp. K31   1 1
No Yes Acidiphilium multivorum AIU301   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Pseudoalteromonas sp. SM9913   1 1
No Yes Glaciecola sp. 4H-3-7+YE-5   1 1
No Yes Alteromonas sp. SN2   1 1
No Yes Alteromonas macleodii str. 'Deep ecotype'   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 3 3
No Yes Ascaris suum Victoria/Ghent Pig roundworm 1 1
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 12 11
No Yes Hordeum vulgare 22 Domesticated barley 26 26
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 14 14
No Yes Bacteroides xylanisolvens XB1A   1 1
No Yes Glaciecola psychrophila 170   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea UM4b'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea UM7'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U8'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U7'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U4'   1 1
No Yes Alteromonas macleodii str. 'Aegean Sea MED64'   1 1
No Yes Alteromonas macleodii str. 'English Channel 615'   1 1
No Yes Alteromonas macleodii AltDE1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 5 5
No Yes Homo sapiens (NCBI version) Human 4 4
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 1 1
No Yes Loa loa v3.3 (Request) Eye worm 1 1
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 1 1
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Lotus japonicus (Early assembly)   3 3
No Yes Malus x domestica (Duplicate) Apple 16 16
No Yes Ricinus communis (Early assembly) Castor bean 13 13
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   19 19
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 10 10
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 12 12
No Yes Phoenix dactylifera (Early draft) Date palm 8 8
No Yes Homo sapiens 69_37 Human 1 1
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 1 1
No Yes Gorilla gorilla 69_3.1 Western gorilla 1 1
No Yes Pongo abelii 69_2 Sumatran orangutan 1 1
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 1 1
No Yes Macaca mulatta 69_1 Rhesus monkey 1 1
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 1 1
No Yes Otolemur garnettii 69_3 Small-eared galago 1 1
No Yes Microcebus murinus 69_1 Gray mouse lemur 1 1
No Yes Mus musculus 69_38 House mouse 1 1
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 1 1
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 1 1
No Yes Cavia porcellus 69_3 Domestic guinea pig 1 1
No Yes Ochotona princeps 69 American pika 1 1
No Yes Tupaia belangeri 69 Northern tree shrew 1 1
No Yes Sus scrofa 69_10.2 Pig 1 1
No Yes Bos taurus 69_3.1 Cattle 1 1
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 1 1
No Yes Mustela putorius furo 69_1.0 Domestic ferret 1 1
No Yes Ailuropoda melanoleuca 69_1 Giant panda 1 1
No Yes Canis familiaris 69_3.1 Dog 1 1
No Yes Equus caballus 69_2 Horse 1 1
No Yes Myotis lucifugus 69_2.0 Little brown bat 1 1
No Yes Pteropus vampyrus 69_1 Large flying fox 1 1
No Yes Sorex araneus 69_1 European shrew 1 1
No Yes Procavia capensis 69_1 Cape rock hyrax 1 1
No Yes Loxodonta africana 69_3 African savanna elephant 1 1
No Yes Echinops telfairi 69 Small Madagascar hedgehog 1 1
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 1 1
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 1 1
No Yes Macropus eugenii 69_1.0 Tammar wallaby 1 1
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 2 1
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 1 1
No Yes Ornithorhynchus anatinus 69_5 Platypus 1 1
No Yes Petromyzon marinus 69_7.0 Sea lamprey 1 1
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 1 1
No Yes Anolis carolinensis 69_2.0 Green anole 1 1
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 1 1
No Yes Latimeria chalumnae 69_1 Coelacanth 1 1
No Yes Gadus morhua 69_1 Atlantic cod 2 2
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 69_4 Torafugu 1 1
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 1 1
No Yes Oryzias latipes 69_1 Japanese medaka 1 1
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 1 1
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 2 2
No Yes Danio rerio 69_9 Zebrafish 2 2
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 2 2
No Yes Ciona intestinalis 69 Vase tunicate 3 3
No Yes Caenorhabditis elegans 69_215 Roundworm 1 1
No Yes Arabidopsis thaliana 10 Thale cress 15 15
No Yes 5_050719P (meta-genome)   1 1
No Yes NCBI 2017_08 genome   2376 2373
No Yes STRING v9.0.5 (STRING)   176 176
No Yes Uniprot 2018_03 genome   2971 2949
No Yes Global Ocean Sampling Expedition (GOS)   3 3
No Yes PDB chains (SCOP 1.75) (PDB)   6 6
No Yes Protein Data Bank (all PDB sequenc)   46 46
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   125 125
No Yes TargetDB (Targets)   2 2

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