SUPERFAMILY 1.75 HMM library and genome assignments server

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SRCR-like superfamily domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
1by2A   5.56e-61   11-109   Scavenger receptor cysteine-rich (SRCR) domain  
1o5fL   1.39e-17   6-112   Hepsin, N-terminal domain  
1z8gA   7.03e-16   6-112   Hepsin, N-terminal domain  

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View all assignments containing a SRCR-like domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   105984 105984
No Yes Homo sapiens 76_38 Human 303 112
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 84 26
No Yes Gorilla gorilla 76_3.1 Western gorilla 124 36
No Yes Pongo abelii 76_2 Sumatran orangutan 78 25
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 80 28
No Yes Papio anubis 76 Olive baboon 76 27
No Yes Macaca mulatta 76_1 Rhesus monkey 140 45
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 155 59
No Yes Otolemur garnettii 76_3 Small-eared galago 98 30
No Yes Microcebus murinus 76_1 Gray mouse lemur 67 24
No Yes Rattus norvegicus 76_5.0 Norway rat 101 34
No Yes Mus musculus 76_38 House mouse 147 59
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 47 22
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 157 36
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 88 29
No Yes Cavia porcellus 76_3 Domestic guinea pig 99 34
No Yes Oryctolagus cuniculus 76_2 Rabbit 68 29
No Yes Ochotona princeps 76 American pika 51 22
No Yes Tupaia belangeri 76 Northern tree shrew 61 22
No Yes Sus scrofa 76_10.2 Pig 102 37
No Yes Bos taurus 76_3.1 Cattle 214 52
No Yes Ovis aries 76_3.1 Sheep 180 60
No Yes Vicugna pacos 76_1 Alpaca 25 10
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 61 23
No Yes Mustela putorius furo 76_1.0 Domestic ferret 78 28
No Yes Ailuropoda melanoleuca 76_1 Giant panda 74 28
No Yes Canis familiaris 76_3.1 Dog 136 44
No Yes Felis catus 76_6.2 Domestic cat 82 27
No Yes Equus caballus 76_2 Horse 114 37
No Yes Myotis lucifugus 76_2.0 Little brown bat 72 27
No Yes Pteropus vampyrus 76_1 Large flying fox 67 27
No Yes Sorex araneus 76_1 European shrew 38 14
No Yes Erinaceus europaeus 76 Western European hedgehog 31 13
No Yes Procavia capensis 76_1 Cape rock hyrax 48 20
No Yes Loxodonta africana 76_3 African savanna elephant 104 35
No Yes Echinops telfairi 76 Small Madagascar hedgehog 55 19
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 177 47
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 28 14
No Yes Macropus eugenii 76_1.0 Tammar wallaby 52 22
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 106 40
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 80 34
No Yes Ornithorhynchus anatinus 76_5 Platypus 145 48
No Yes Saccoglossus kowalevskii v3.0   77 46
No Yes Petromyzon marinus 76_7.0 Sea lamprey 101 34
No Yes Meleagris gallopavo 76_2 Turkey 138 41
No Yes Gallus gallus 76_4 Chicken 128 32
No Yes Anas platyrhynchos 76_1.0 Mallard 96 33
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 85 26
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 80 29
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 155 39
No Yes Anolis carolinensis 76_2.0 Green anole 100 29
No Yes Xenopus laevis African clawed frog 29 16
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 131 46
No Yes Latimeria chalumnae 76_1 Coelacanth 295 62
No Yes Lepisosteus oculatus 76 Spotted gar 246 67
No Yes Gadus morhua 76_1 Atlantic cod 89 30
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 69 25
No Yes Takifugu rubripes 76_4 Torafugu 160 64
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 90 34
No Yes Oryzias latipes 76_1 Japanese medaka 65 26
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 54 21
No Yes Poecilia formosa 76 Amazon molly 101 29
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 220 55
No Yes Astyanax mexicanus 76 Mexican tetra 137 47
No Yes Danio rerio 76_9 Zebrafish 241 67
No Yes Oikopleura dioica   15 9
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 23 10
No Yes Ciona intestinalis 76 Vase tunicate 11 5
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 1328 427
No Yes Adineta vaga   4 4
No Yes Octopus bimaculoides 280   88 41
No Yes Crassostrea gigas 22 Pacific oyster 241 69
No Yes Lottia gigantea Owl limpet 116 22
No Yes Helobdella robusta   27 24
No Yes Capitella sp. I   110 67
No Yes Danaus plexippus OGS1.0 Monarch butterfly 8 5
No Yes Heliconius melpomene Postman butterfly 6 4
No Yes Bombyx mori Domestic silkworm 6 4
No Yes Nasonia vitripennis Jewel wasp 10 5
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 9 7
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 10 5
No Yes Linepithema humile v1.1 Argentine ant 10 5
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 12 7
No Yes Solenopsis invicta v.2.2.3 Red fire ant 10 5
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 8 3
No Yes Atta cephalotes v1.1   7 4
No Yes Camponotus floridanus v3.3 Florida carpenter ant 9 4
No Yes Lucilia cuprina Australian sheep blowfly 5 3
No Yes Drosophila grimshawi 1.3   8 4
No Yes Drosophila willistoni 1.3   8 4
No Yes Drosophila pseudoobscura 2.13   8 4
No Yes Drosophila persimilis 1.3   7 4
No Yes Drosophila suzukii   9 5
No Yes Drosophila yakuba 1.3   8 4
No Yes Drosophila simulans 1.3   8 4
No Yes Drosophila sechellia 1.3   8 4
No Yes Drosophila melanogaster 76_5 Fruit fly 20 9
No Yes Drosophila erecta 1.3   8 4
No Yes Drosophila ananassae 1.3   8 4
No Yes Drosophila virilis 1.2   8 4
No Yes Drosophila mojavensis 1.3   9 5
No Yes Megaselia scalaris 22   3 2
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 6 3
No Yes Culex pipiens quinquefasciatus Southern house mosquito 9 5
No Yes Anopheles darlingi 22 American malaria mosquito 7 4
No Yes Anopheles gambiae 49_3j African malaria mosquito 10 5
No Yes Tribolium castaneum 3.0 Red flour beetle 8 4
No Yes Pediculus humanus corporis (Early assembly) Human body louse 10 7
No Yes Acyrthosiphon pisum Pea aphid 9 5
No Yes Rhodnius prolixus 22   7 3
No Yes Daphnia pulex Common water flea 12 7
No Yes Strigamia maritima 22   17 10
No Yes Sarcoptes scabiei   2 1
No Yes Tetranychus urticae Two-spotted spider mite 5 3
No Yes Ixodes scapularis (Preliminary) Black-legged tick 3 3
No Yes Pristionchus pacificus   3 2
No Yes Meloidogyne hapla   1 1
No Yes Onchocerca volvulus 22   3 1
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 1 1
No Yes Caenorhabditis japonica   3 2
No Yes Caenorhabditis brenneri   4 2
No Yes Caenorhabditis remanei   5 3
No Yes Caenorhabditis elegans 76_235 Roundworm 4 2
No Yes Caenorhabditis briggsae 2   4 2
No Yes Trichinella spiralis 22   6 3
No Yes Hymenolepis microstoma   4 2
No Yes Echinococcus multilocularis   2 1
No Yes Echinococcus granulosus   1 1
No Yes Taenia solium Pork tapeworm 3 2
No Yes Schistosoma mansoni   7 5
No Yes Mnemiopsis leidyi Sea walnut 152 70
No Yes Acropora digitifera v1.0   148 67
No Yes Nematostella vectensis 1.0 Starlet sea anemone 133 67
No Yes Hydra vulgaris   11 4
No Yes Amphimedon queenslandica   1336 299
No Yes Trichoplax adhaerens   142 46
No Yes Chlorella variabilis sp. NC64A   67 18
No Yes Volvox carteri f. nagariensis   77 34
No Yes Volvox carteri v199   83 34
No Yes Chlamydomonas reinhardtii 4.0   90 35
No Yes Bigelowiella natans CCMP2755 22   14 11
No Yes Cyanophora paradoxa   1 1
No Yes Aureococcus anophagefferens   13 6
No Yes Cryptosporidium hominis   2 1
No Yes Cryptosporidium muris   2 1
No Yes Cryptosporidium parvum Iowa II   2 1
No Yes Neospora caninum   2 1
No Yes Toxoplasma gondii VEG   4 2
No Yes Toxoplasma gondii ME49   4 2
No Yes Toxoplasma gondii GT1   2 1
No Yes Babesia bovis T2Bo   4 2
No Yes Theileria parva   2 1
No Yes Theileria annulata   2 1
No Yes Plasmodium falciparum 3D7   2 1
No Yes Plasmodium vivax SaI-1 7.0   2 1
No Yes Plasmodium knowlesi strain H   2 1
No Yes Plasmodium yoelii ssp. yoelii 1   2 1
No Yes Plasmodium chabaudi   2 1
No Yes Plasmodium berghei ANKA   2 1
No Yes Symbiodinium minutum clade B1 v1.2   17 7
No Yes Guillardia theta CCMP2712 v1.0   24 14
No Yes Emiliania huxleyi CCMP1516   2 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 123 39
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 14 7
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 10 5
No Yes Ascaris suum Victoria/Ghent Pig roundworm 3 3
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 4 2
No Yes Neospora caninum Nc-Liverpool 6.2   2 1
No Yes Plasmodium falciparum HB3   2 1
No Yes Plasmodium falciparum Dd2   2 1
No Yes Homo sapiens 75_37 (old version GRC) Human 298 109
No Yes Homo sapiens (NCBI version) Human 149 42
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 82 29
No Yes Loa loa v3.3 (Request) Eye worm 3 2
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 3 3
No Yes Homo sapiens 69_37 Human 91 27
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 83 25
No Yes Gorilla gorilla 69_3.1 Western gorilla 98 28
No Yes Pongo abelii 69_2 Sumatran orangutan 78 25
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 75 26
No Yes Macaca mulatta 69_1 Rhesus monkey 76 26
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 95 29
No Yes Otolemur garnettii 69_3 Small-eared galago 98 30
No Yes Microcebus murinus 69_1 Gray mouse lemur 67 24
No Yes Rattus norvegicus 69_3.4 Norway rat 78 30
No Yes Mus musculus 69_38 House mouse 86 30
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 47 22
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 128 30
No Yes Cavia porcellus 69_3 Domestic guinea pig 97 32
No Yes Oryctolagus cuniculus 69_2 Rabbit 67 28
No Yes Ochotona princeps 69 American pika 51 22
No Yes Tupaia belangeri 69 Northern tree shrew 61 22
No Yes Sus scrofa 69_10.2 Pig 74 26
No Yes Bos taurus 69_3.1 Cattle 163 41
No Yes Vicugna pacos 69_1 Alpaca 25 10
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 61 23
No Yes Mustela putorius furo 69_1.0 Domestic ferret 78 28
No Yes Ailuropoda melanoleuca 69_1 Giant panda 73 27
No Yes Canis familiaris 69_3.1 Dog 90 30
No Yes Felis catus 69 Domestic cat 60 23
No Yes Equus caballus 69_2 Horse 85 28
No Yes Myotis lucifugus 69_2.0 Little brown bat 71 26
No Yes Pteropus vampyrus 69_1 Large flying fox 67 27
No Yes Sorex araneus 69_1 European shrew 38 14
No Yes Erinaceus europaeus 69 Western European hedgehog 31 13
No Yes Procavia capensis 69_1 Cape rock hyrax 48 20
No Yes Loxodonta africana 69_3 African savanna elephant 90 30
No Yes Echinops telfairi 69 Small Madagascar hedgehog 55 19
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 40 17
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 28 14
No Yes Macropus eugenii 69_1.0 Tammar wallaby 52 22
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 80 29
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 80 34
No Yes Ornithorhynchus anatinus 69_5 Platypus 119 42
No Yes Petromyzon marinus 69_7.0 Sea lamprey 77 25
No Yes Meleagris gallopavo 69_2 Turkey 117 34
No Yes Gallus gallus 69_2 Chicken 139 33
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 81 25
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 138 33
No Yes Anolis carolinensis 69_2.0 Green anole 97 26
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 97 33
No Yes Latimeria chalumnae 69_1 Coelacanth 267 50
No Yes Gadus morhua 69_1 Atlantic cod 68 23
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 60 22
No Yes Takifugu rubripes 69_4 Torafugu 59 22
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 71 25
No Yes Oryzias latipes 69_1 Japanese medaka 57 20
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 54 21
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 193 45
No Yes Danio rerio 69_9 Zebrafish 189 48
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 10 5
No Yes Ciona intestinalis 69 Vase tunicate 11 5
No Yes Drosophila melanogaster 69_5 Fruit fly 8 4
No Yes Caenorhabditis elegans 69_215 Roundworm 4 2
No Yes NCBI 2017_08 genome   43750 14409
No Yes Protozoadb 2010_08 (Protozoadb)   40 21
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   4381 1565
No Yes Uniprot 2018_03 genome   23812 8875
No Yes Global Ocean Sampling Expedition (GOS)   22 19
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   31 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   50 50
No Yes TargetDB (Targets)   81 35

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