SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Serpins superfamily domain assignments
in
Eubacterium eligens ATCC 27750


No domain assignments for these genomes.


Add assignments from groups of genomes

View all assignments containing a Serpins domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   57013 57013
No Yes Homo sapiens 76_38 Human 185 182
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 34 34
No Yes Gorilla gorilla 76_3.1 Western gorilla 40 40
No Yes Pongo abelii 76_2 Sumatran orangutan 39 38
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 37 36
No Yes Papio anubis 76 Olive baboon 40 40
No Yes Macaca mulatta 76_1 Rhesus monkey 62 60
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 81 81
No Yes Otolemur garnettii 76_3 Small-eared galago 38 38
No Yes Microcebus murinus 76_1 Gray mouse lemur 39 36
No Yes Rattus norvegicus 76_5.0 Norway rat 57 54
No Yes Mus musculus 76_38 House mouse 129 129
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 52 37
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 46 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 35 34
No Yes Cavia porcellus 76_3 Domestic guinea pig 48 48
No Yes Oryctolagus cuniculus 76_2 Rabbit 39 39
No Yes Ochotona princeps 76 American pika 45 35
No Yes Tupaia belangeri 76 Northern tree shrew 38 29
No Yes Sus scrofa 76_10.2 Pig 45 44
No Yes Bos taurus 76_3.1 Cattle 49 49
No Yes Ovis aries 76_3.1 Sheep 54 54
No Yes Vicugna pacos 76_1 Alpaca 41 32
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 30 29
No Yes Mustela putorius furo 76_1.0 Domestic ferret 34 34
No Yes Ailuropoda melanoleuca 76_1 Giant panda 36 36
No Yes Canis familiaris 76_3.1 Dog 40 40
No Yes Felis catus 76_6.2 Domestic cat 35 35
No Yes Equus caballus 76_2 Horse 44 44
No Yes Myotis lucifugus 76_2.0 Little brown bat 44 44
No Yes Pteropus vampyrus 76_1 Large flying fox 37 32
No Yes Sorex araneus 76_1 European shrew 37 31
No Yes Erinaceus europaeus 76 Western European hedgehog 29 26
No Yes Procavia capensis 76_1 Cape rock hyrax 37 31
No Yes Loxodonta africana 76_3 African savanna elephant 35 35
No Yes Echinops telfairi 76 Small Madagascar hedgehog 41 29
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 35 33
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 29 21
No Yes Macropus eugenii 76_1.0 Tammar wallaby 37 27
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 42 42
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 35 35
No Yes Ornithorhynchus anatinus 76_5 Platypus 37 37
No Yes Saccoglossus kowalevskii v3.0   7 7
No Yes Petromyzon marinus 76_7.0 Sea lamprey 10 10
No Yes Meleagris gallopavo 76_2 Turkey 30 30
No Yes Gallus gallus 76_4 Chicken 28 28
No Yes Anas platyrhynchos 76_1.0 Mallard 26 26
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 30 29
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 29 29
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 29 29
No Yes Anolis carolinensis 76_2.0 Green anole 31 31
No Yes Xenopus laevis African clawed frog 59 59
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 29 29
No Yes Latimeria chalumnae 76_1 Coelacanth 28 27
No Yes Lepisosteus oculatus 76 Spotted gar 22 22
No Yes Gadus morhua 76_1 Atlantic cod 31 30
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 25 25
No Yes Takifugu rubripes 76_4 Torafugu 77 76
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 40 40
No Yes Oryzias latipes 76_1 Japanese medaka 32 32
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 21 21
No Yes Poecilia formosa 76 Amazon molly 24 22
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 32 32
No Yes Astyanax mexicanus 76 Mexican tetra 26 26
No Yes Danio rerio 76_9 Zebrafish 51 51
No Yes Oikopleura dioica   11 11
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 5 5
No Yes Ciona intestinalis 76 Vase tunicate 10 10
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 14 13
No Yes Adineta vaga   16 16
No Yes Octopus bimaculoides 280   9 9
No Yes Crassostrea gigas 22 Pacific oyster 9 9
No Yes Lottia gigantea Owl limpet 8 8
No Yes Helobdella robusta   16 16
No Yes Capitella sp. I   5 5
No Yes Danaus plexippus OGS1.0 Monarch butterfly 30 29
No Yes Heliconius melpomene Postman butterfly 28 23
No Yes Bombyx mori Domestic silkworm 44 39
No Yes Nasonia vitripennis Jewel wasp 10 8
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 15 15
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 10 8
No Yes Linepithema humile v1.1 Argentine ant 11 9
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 10 8
No Yes Solenopsis invicta v.2.2.3 Red fire ant 9 8
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 10 8
No Yes Atta cephalotes v1.1   11 9
No Yes Camponotus floridanus v3.3 Florida carpenter ant 13 11
No Yes Lucilia cuprina Australian sheep blowfly 26 22
No Yes Drosophila grimshawi 1.3   19 19
No Yes Drosophila willistoni 1.3   24 24
No Yes Drosophila pseudoobscura 2.13   29 28
No Yes Drosophila persimilis 1.3   28 26
No Yes Drosophila suzukii   53 36
No Yes Drosophila yakuba 1.3   33 33
No Yes Drosophila simulans 1.3   34 33
No Yes Drosophila sechellia 1.3   40 39
No Yes Drosophila melanogaster 76_5 Fruit fly 50 50
No Yes Drosophila erecta 1.3   26 26
No Yes Drosophila ananassae 1.3   31 31
No Yes Drosophila virilis 1.2   19 19
No Yes Drosophila mojavensis 1.3   21 21
No Yes Megaselia scalaris 22   18 14
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 41 39
No Yes Culex pipiens quinquefasciatus Southern house mosquito 58 53
No Yes Anopheles darlingi 22 American malaria mosquito 21 15
No Yes Anopheles gambiae 49_3j African malaria mosquito 26 24
No Yes Tribolium castaneum 3.0 Red flour beetle 36 33
No Yes Pediculus humanus corporis (Early assembly) Human body louse 16 15
No Yes Acyrthosiphon pisum Pea aphid 18 16
No Yes Rhodnius prolixus 22   7 7
No Yes Daphnia pulex Common water flea 6 6
No Yes Strigamia maritima 22   20 11
No Yes Sarcoptes scabiei   11 10
No Yes Tetranychus urticae Two-spotted spider mite 22 22
No Yes Ixodes scapularis (Preliminary) Black-legged tick 47 44
No Yes Pristionchus pacificus   20 20
No Yes Meloidogyne incognita Southern root-knot nematode 8 5
No Yes Meloidogyne hapla   1 1
No Yes Onchocerca volvulus 22   7 7
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 26 26
No Yes Caenorhabditis japonica   15 13
No Yes Caenorhabditis brenneri   25 25
No Yes Caenorhabditis remanei   32 31
No Yes Caenorhabditis elegans 76_235 Roundworm 22 22
No Yes Caenorhabditis briggsae 2   15 14
No Yes Trichinella spiralis 22   3 3
No Yes Hymenolepis microstoma   11 11
No Yes Echinococcus multilocularis   4 4
No Yes Echinococcus granulosus   6 6
No Yes Taenia solium Pork tapeworm 4 4
No Yes Schistosoma mansoni   8 8
No Yes Mnemiopsis leidyi Sea walnut 9 9
No Yes Thelohanellus kitauei   186 186
No Yes Acropora digitifera v1.0   3 3
No Yes Nematostella vectensis 1.0 Starlet sea anemone 4 4
No Yes Hydra vulgaris   1 1
No Yes Trichoplax adhaerens   3 3
No Yes Conidiobolus coronatus NRRL28638 v1.0   1 1
No Yes Phycomyces blakesleeanus   1 1
No Yes Pisolithus microcarpus 441 v1.0   1 1
No Yes Laccaria bicolor S238N-H82   1 1
No Yes Fusarium verticillioides 7600   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Ajellomyces dermatitidis SLH14081   1 1
No Yes Microsporum canis CBS 113480   1 1
No Yes Trichophyton equinum CBS 127.97   1 1
No Yes Trichophyton verrucosum HKI 0517   1 1
No Yes Arthroderma benhamiae CBS 112371   1 1
No Yes Trichophyton tonsurans CBS 112818   1 1
No Yes Trichophyton rubrum CBS 118892   1 1
No Yes Aspergillus sydowii v1.0   1 1
No Yes Aspergillus versicolor v1.0   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Entamoeba dispar 1.2   2 2
No Yes Entamoeba invadens 1.2   9 9
No Yes Entamoeba histolytica 1   1 1
No Yes Selaginella moellendorffii   2 2
No Yes Pinus taeda Loblolly pine 3 3
No Yes Picea abies Norway spruce 1 1
No Yes Eucalyptus grandis v201 Rose gum 3 3
No Yes Theobroma cacao B97-61/B2 v1 Cacao 3 3
No Yes Gossypium raimondii v221   3 3
No Yes Citrus clementina v165   3 3
No Yes Citrus sinensis v154 Sweet orange 4 4
No Yes Thellungiella halophila v173   11 11
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 16 15
No Yes Capsella rubella v183   15 15
No Yes Arabidopsis lyrata Lyrate rockcress 16 15
No Yes Arabidopsis thaliana 10 Thale cress 14 14
No Yes Carica papaya Papaya 3 3
No Yes Medicago truncatula Barrel medic 44 44
No Yes Phaseolus vulgaris v186 French bean 1 1
No Yes Glycine max v109 Soybean 2 2
No Yes Cucumis sativus v122 Cucumber 4 4
No Yes Fragaria vesca Wild strawberry 24 24
No Yes Malus domestica v196 Apple 43 43
No Yes Prunus persica v139 Peach 7 7
No Yes Linum usitatissimum v200 Flax 21 20
No Yes Manihot esculenta v147 Cassava 4 3
No Yes Populus trichocarpa v156 Black cottonwood 8 8
No Yes Vitis vinifera Wine grape 1 1
No Yes Mimulus guttatus v140 Spotted monkey flower 27 27
No Yes Solanum lycopersicum v.2.3 Tomato 8 8
No Yes Solanum tuberosum Potato 11 11
No Yes Actinidia chinensis Hongyang   8 7
No Yes Aquilegia coerulea v195   11 11
No Yes Triticum urartu 22   37 33
No Yes Triticum aestivum 22 Bread wheat 47 47
No Yes Aegilops tauschii 22   70 65
No Yes Brachypodium distachyon Stiff brome 27 24
No Yes Oryza barthii 22 African wild rice 30 20
No Yes Oryza meridionalis 22   15 12
No Yes Oryza glumaepatula 22   28 21
No Yes Oryza glaberrima African rice 14 12
No Yes Oryza punctata 22   29 21
No Yes Oryza nivara 22   29 23
No Yes Oryza brachyantha 22 Malo sina 7 6
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 25 23
No Yes Oryza sativa v193 Rice 25 23
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 4 4
No Yes Panicum virgatum v202 Switchgrass 43 43
No Yes Setaria italica v164 Foxtail millet 19 18
No Yes Zea mays subsp. mays Maize 7 7
No Yes Zea mays v181 Maize 8 8
No Yes Sorghum bicolor Sorghum 18 18
No Yes Musa balbisiana Balbis banana 2 2
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   4 4
No Yes Chlorella variabilis sp. NC64A   3 2
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Thecamonas trahens ATCC 50062   2 2
No Yes Bigelowiella natans CCMP2755 22   4 3
No Yes Giardia lamblia 2.3   1 1
No Yes Cyanophora paradoxa   3 3
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Perkinsus marinus ATCC 50983   6 6
No Yes Tetrahymena thermophila SB210 1   11 11
No Yes Ichthyophthirius multifiliis strain G5   3 3
No Yes Neospora caninum   2 2
No Yes Toxoplasma gondii VEG   2 2
No Yes Toxoplasma gondii ME49   2 2
No Yes Toxoplasma gondii GT1   2 2
No Yes Plasmodium knowlesi strain H   1 1
No Yes Symbiodinium minutum clade B1 v1.2   2 1
No Yes Naegleria gruberi   12 12
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Emiliania huxleyi CCMP1516   2 2
No Yes Microcoleus sp. PCC 7113   2 2
No Yes Gloeocapsa sp. PCC 7428   1 1
No Yes Gloeobacter violaceus PCC 7421   2 2
No Yes Rivularia sp. PCC 7116   1 1
No Yes Calothrix sp. PCC 7507   1 1
No Yes Anabaena variabilis ATCC 29413   1 1
No Yes Nostoc sp. PCC 7107   1 1
No Yes Nostoc punctiforme PCC 73102   1 1
No Yes Nostoc sp. PCC 7120   1 1
No Yes Nostoc sp. PCC 7524   1 1
No Yes Mycoplasma synoviae 53   1 1
No Yes Eggerthella sp. YY7918   1 1
No Yes Eggerthella lenta DSM 2243   1 1
No Yes Olsenella uli DSM 7084   1 1
No Yes Catenulispora acidiphila DSM 44928   1 1
No Yes Thermobifida fusca YX   1 1
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   1 1
No Yes Thermomonospora curvata DSM 43183   2 1
No Yes Streptosporangium roseum DSM 43021   1 1
No Yes Kitasatospora setae KM-6054   6 3
No Yes Streptomyces sp. PAMC26508   3 2
No Yes Streptomyces flavogriseus ATCC 33331   3 2
No Yes Streptomyces sp. SirexAA-E   1 1
No Yes Streptomyces griseus subsp. griseus NBRC 13350   1 1
No Yes Streptomyces bingchenggensis BCW-1   2 1
No Yes Streptomyces violaceusniger Tu 4113   2 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   2 1
No Yes Actinosynnema mirum DSM 43827   1 1
No Yes Saccharomonospora viridis DSM 43017   1 1
No Yes Saccharopolyspora erythraea NRRL 2338   1 1
No Yes Amycolatopsis mediterranei U32   1 1
No Yes Kribbella flavida DSM 17836   4 2
No Yes Propionibacterium propionicum F0230a   1 1
No Yes Verrucosispora maris AB-18-032   1 1
No Yes Micromonospora sp. L5   1 1
No Yes Micromonospora aurantiaca ATCC 27029   1 1
No Yes Segniliparus rotundus DSM 44985   1 1
No Yes Tsukamurella paurometabola DSM 20162   1 1
No Yes Nocardia cyriacigeorgica GUH-2   2 1
No Yes Amycolicicoccus subflavus DQS3-9A1   1 1
No Yes Mycobacterium gilvum PYR-GCK   2 1
No Yes Mycobacterium marinum M   1 1
No Yes Beutenbergia cavernae DSM 12333   1 1
No Yes Brachybacterium faecium DSM 4810   1 1
No Yes Isoptericola variabilis 225   1 1
No Yes Xylanimonas cellulosilytica DSM 15894   1 1
No Yes [Cellvibrio] gilvus ATCC 13127   1 1
No Yes Arthrobacter phenanthrenivorans Sphe3   1 1
No Yes Arthrobacter aurescens TC1   1 1
No Yes Arthrobacter sp. Rue61a   1 1
No Yes Arthrobacter sp. FB24   1 1
No Yes Renibacterium salmoninarum ATCC 33209   1 1
No Yes Bifidobacterium longum subsp. longum JDM301   1 1
No Yes Bifidobacterium dentium Bd1   1 1
No Yes Bifidobacterium breve ACS-071-V-Sch8b   1 1
No Yes Actinomyces sp. F0330   1 1
No Yes Dehalococcoides ethenogenes 195   1 1
No Yes Dehalococcoides sp. BAV1   1 1
No Yes Dehalogenimonas lykanthroporepellens BL-DC-9   1 1
No Yes Natranaerobius thermophilus JW/NM-WN-LF   1 1
No Yes Symbiobacterium thermophilum IAM 14863   2 2
No Yes Clostridium clariflavum DSM 19732   1 1
No Yes Eubacterium siraeum   1 1
No Yes Clostridium thermocellum ATCC 27405   3 3
No Yes Ruminococcus bromii   1 1
No Yes Ruminococcus albus 7   2 2
No Yes Desulfosporosinus orientis DSM 765   1 1
No Yes Syntrophobotulus glycolicus DSM 8271   1 1
No Yes Desulfitobacterium hafniense Y51   1 1
No Yes Desulfitobacterium dehalogenans ATCC 51507   1 1
No Yes Desulfotomaculum acetoxidans DSM 771   1 1
No Yes Acetobacterium woodii DSM 1030   1 1
No Yes Eubacterium limosum KIST612   1 1
No Yes Clostridium phytofermentans ISDg   2 2
No Yes Coprococcus sp. ART55/1   1 1
No Yes Roseburia hominis A2-183   1 1
No Yes Roseburia intestinalis   1 1
No Yes Butyrivibrio fibrisolvens   1 1
No Yes Alkaliphilus metalliredigens QYMF   1 1
No Yes Clostridium ljungdahlii DSM 13528   2 2
No Yes Clostridium kluyveri DSM 555   1 1
No Yes Thermodesulfobium narugense DSM 14796   2 2
No Yes Thermoanaerobacter tengcongensis MB4   1 1
No Yes Paenibacillus mucilaginosus 3016   2 2
No Yes Oceanobacillus iheyensis HTE831   2 2
No Yes Bacillus atrophaeus 1942   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Bacillus cellulosilyticus DSM 2522   2 2
No Yes Gemmatimonas aurantiaca T-27   1 1
No Yes Chlorobium limicola DSM 245   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   1 1
No Yes Salinibacter ruber M8   1 1
No Yes Flexibacter litoralis DSM 6794   1 1
No Yes Cyclobacterium marinum DSM 745   1 1
No Yes Leadbetterella byssophila DSM 17132   1 1
No Yes Dyadobacter fermentans DSM 18053   1 1
No Yes Spirosoma linguale DSM 74   1 1
No Yes Runella slithyformis DSM 19594   1 1
No Yes Tannerella forsythia ATCC 43037   1 1
No Yes Paludibacter propionicigenes WB4   2 2
No Yes Prevotella melaninogenica ATCC 25845   1 1
No Yes Prevotella ruminicola 23   1 1
No Yes Porphyromonas asaccharolytica DSM 20707   1 1
No Yes Pedobacter heparinus DSM 2366   1 1
No Yes Candidatus Protochlamydia amoebophila UWE25   1 1
No Yes Simkania negevensis Z   2 2
No Yes Planctomyces brasiliensis DSM 5305   1 1
No Yes Fretibacterium fastidiosum   1 1
No Yes Sphaerochaeta pleomorpha str. Grapes   1 1
No Yes Sphaerochaeta globus str. Buddy   1 1
No Yes Thermodesulfobacterium sp. OPB45   1 1
No Yes Calditerrivibrio nitroreducens DSM 19672   2 2
No Yes Thermotoga lettingae TMO   1 1
No Yes Thermotoga thermarum DSM 5069   1 1
No Yes Sulfurihydrogenibium sp. YO3AOP1   1 1
No Yes Dictyoglomus turgidum DSM 6724   1 1
No Yes Dictyoglomus thermophilum H-6-12   1 1
No Yes Candidatus Chloracidobacterium thermophilum B   1 1
No Yes Candidatus Koribacter versatilis Ellin345   1 1
No Yes Desulfomonile tiedjei DSM 6799   1 1
No Yes Hippea maritima DSM 10411   1 1
No Yes Geobacter uraniireducens Rf4   1 1
No Yes Sorangium cellulosum 'So ce 56'   7 7
No Yes Anaeromyxobacter sp. Fw109-5   1 1
No Yes Stigmatella aurantiaca DW4/3-1   1 1
No Yes Myxococcus xanthus DK 1622   1 1
No Yes Rhizobium leguminosarum bv. viciae 3841   1 1
No Yes Rhodomicrobium vannielii ATCC 17100   1 1
No Yes Psychrobacter sp. PRwf-1   1 1
No Yes Cenarchaeum symbiosum A   5 5
No Yes Candidatus Korarchaeum cryptofilum OPF8   1 1
No Yes Thermofilum sp. 1910b   1 1
No Yes Pyrobaculum sp. 1860   1 1
No Yes Pyrobaculum calidifontis JCM 11548   1 1
No Yes Pyrobaculum arsenaticum DSM 13514   1 1
No Yes Pyrobaculum oguniense TE7   1 1
No Yes Thermoproteus neutrophilus V24Sta   1 1
No Yes Pyrobaculum aerophilum str. IM2   1 1
No Yes Pyrobaculum islandicum DSM 4184   1 1
No Yes Methanococcoides burtonii DSM 6242   3 3
No Yes Methanosarcina acetivorans C2A   4 4
No Yes Methanosarcina mazei Go1   1 1
No Yes Methanosphaerula palustris E1-9c   1 1
No Yes Methanoplanus petrolearius DSM 11571   3 3
No Yes Methanoculleus bourgensis MS2   2 2
No Yes Methanoculleus marisnigri JR1   2 2
No Yes Thermococcus sp. 4557   1 1
No Yes Thermococcus kodakarensis KOD1   1 1
No Yes Thermococcus gammatolerans EJ3   1 1
No Yes Halopiger xanaduensis SH-6   1 1
No Yes Haloterrigena turkmenica DSM 5511   1 1
No Yes Natrialba magadii ATCC 43099   1 1
No Yes Halorubrum lacusprofundi ATCC 49239   1 1
No Yes Haloferax mediterranei ATCC 33500   1 1
No Yes Haloferax volcanii DS2   1 1
No Yes Aciduliprofundum sp. MAR08-339   1 1
No Yes Aciduliprofundum boonei T469   2 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 50 50
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 45 45
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 27 25
No Yes Ascaris suum Victoria/Ghent Pig roundworm 14 13
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 19 19
No Yes Paracoccidioides brasiliensis Pb01   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Ajellomyces dermatitidis ER-3   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 2 2
No Yes Hordeum vulgare 22 Domesticated barley 16 16
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 28 26
No Yes Neospora caninum Nc-Liverpool 6.2   2 2
No Yes Synechococcus sp. JA-2-3B'a(2-13)   1 1
No Yes Synechococcus sp. JA-3-3Ab   1 1
No Yes Oscillatoria nigro-viridis PCC 7112   1 1
No Yes Oscillatoria acuminata PCC 6304   2 2
No Yes Arthrospira platensis NIES-39   2 2
No Yes Cyanothece sp. PCC 7822   1 1
No Yes Cyanothece sp. PCC 7425   1 1
No Yes Cyanothece sp. PCC 7424   1 1
No Yes Cyanothece sp. ATCC 51142   1 1
No Yes Cyanobacterium stanieri PCC 7202   1 1
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   2 2
No Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327   1 1
No Yes Calothrix parietina Calothrix sp. PCC 6303   1 1
No Yes Gordonibacter pamelaeae 7-10-1-b   1 1
No Yes Frankia sp. EuI1c   1 1
No Yes Nocardiopsis alba ATCC BAA-2165   1 1
No Yes Streptomyces albus J1074   1 1
No Yes Streptomyces rapamycinicus NRRL 5491   2 1
No Yes Streptomyces davawensis JCM 4913   2 1
No Yes Streptomyces fulvissimus DSM 40593   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   2 1
No Yes Saccharothrix espanaensis DSM 44229   1 1
No Yes Amycolatopsis mediterranei RB   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis orientalis HCCB10007   1 1
No Yes Mycobacterium liflandii 128FXT   1 1
No Yes Mycobacterium kansasii ATCC 12478   3 3
No Yes Bifidobacterium longum NCC2705   1 1
No Yes Bifidobacterium longum DJO10A   1 1
No Yes Bifidobacterium longum subsp. infantis 157F   1 1
No Yes Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222   1 1
No Yes Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222   1 1
No Yes Bifidobacterium longum subsp. longum KACC 91563   1 1
No Yes Bifidobacterium longum subsp. longum BBMN68   1 1
No Yes Bifidobacterium longum subsp. longum F8   1 1
No Yes Bifidobacterium longum subsp. longum JCM 1217   1 1
No Yes Bifidobacterium breve UCC2003   1 1
No Yes Actinomyces viscosus C505   1 1
No Yes Dehalococcoides mccartyi GY50   1 1
No Yes Dehalococcoides mccartyi DCMB5   1 1
No Yes Dehalococcoides mccartyi BTF08   1 1
No Yes Dehalococcoides sp. GT   1 1
No Yes Dehalococcoides sp. VS   1 1
No Yes Dehalococcoides sp. CBDB1   1 1
No Yes Clostridium thermocellum DSM 1313   3 3
No Yes [Clostridium] stercorarium Clostridiu subsp. stercorarium DSM 8532   2 2
No Yes Desulfitobacterium dichloroeliminans LMG P-21439   1 1
No Yes Desulfitobacterium hafniense DCB-2   1 1
No Yes Desulfotomaculum gibsoniae DSM 7213   2 2
No Yes Roseburia intestinalis XB6B4   2 2
No Yes Clostridium sp. SY8519   1 1
No Yes Clostridium autoethanogenum DSM 10061   2 2
No Yes Clostridium kluyveri NBRC 12016   1 1
No Yes Paenibacillus sp. Y412MC10   1 1
No Yes Paenibacillus mucilaginosus KNP414   2 2
No Yes Paenibacillus mucilaginosus K02   2 2
No Yes Bacillus licheniformis 9945A   1 1
No Yes Bacillus subtilis subsp. spizizenii TU-B-10   1 1
No Yes Bacillus subtilis subsp. spizizenii str. W23   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Chlorobium phaeobacteroides BS1   1 1
No Yes Salinibacter ruber DSM 13855   1 1
No Yes Emticicia oligotrophica DSM 17448   1 1
No Yes Geobacter sp. M18   1 1
No Yes Sorangium cellulosum So0157-2   4 4
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Rhizobium etli CFN 42   1 1
No Yes Rhizobium etli bv. mimosae str. Mim1   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   1 1
No Yes Methanosarcina mazei Tuc01   1 1
No Yes Methanoregula formicica Methanoregula formicicum SMSP   1 1
No Yes Thermococcus sp. AM4   1 1
No Yes Thermococcus litoralis DSM 5473   1 1
No Yes Halorhabdus tiamatea SARL4B   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 169 166
No Yes Homo sapiens (NCBI version) Human 61 61
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 64 64
No Yes Heliconius numata (Incomplete)   47 47
No Yes Loa loa v3.3 (Request) Eye worm 18 18
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 11 11
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 15 15
No Yes Lotus japonicus (Early assembly)   82 82
No Yes Malus x domestica (Duplicate) Apple 43 43
No Yes Ricinus communis (Early assembly) Castor bean 6 6
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   21 18
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 8 8
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 8 8
No Yes Homo sapiens 69_37 Human 37 37
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 34 34
No Yes Gorilla gorilla 69_3.1 Western gorilla 36 36
No Yes Pongo abelii 69_2 Sumatran orangutan 38 37
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 36 36
No Yes Macaca mulatta 69_1 Rhesus monkey 39 38
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 39 39
No Yes Otolemur garnettii 69_3 Small-eared galago 37 37
No Yes Microcebus murinus 69_1 Gray mouse lemur 39 36
No Yes Rattus norvegicus 69_3.4 Norway rat 50 47
No Yes Mus musculus 69_38 House mouse 64 64
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 52 37
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 42 42
No Yes Cavia porcellus 69_3 Domestic guinea pig 46 46
No Yes Oryctolagus cuniculus 69_2 Rabbit 36 36
No Yes Ochotona princeps 69 American pika 45 35
No Yes Tupaia belangeri 69 Northern tree shrew 38 29
No Yes Sus scrofa 69_10.2 Pig 41 40
No Yes Bos taurus 69_3.1 Cattle 47 47
No Yes Vicugna pacos 69_1 Alpaca 41 32
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 30 29
No Yes Mustela putorius furo 69_1.0 Domestic ferret 34 34
No Yes Ailuropoda melanoleuca 69_1 Giant panda 35 35
No Yes Canis familiaris 69_3.1 Dog 35 35
No Yes Felis catus 69 Domestic cat 39 31
No Yes Equus caballus 69_2 Horse 42 42
No Yes Myotis lucifugus 69_2.0 Little brown bat 44 44
No Yes Pteropus vampyrus 69_1 Large flying fox 37 32
No Yes Sorex araneus 69_1 European shrew 37 31
No Yes Erinaceus europaeus 69 Western European hedgehog 29 26
No Yes Procavia capensis 69_1 Cape rock hyrax 37 31
No Yes Loxodonta africana 69_3 African savanna elephant 33 33
No Yes Echinops telfairi 69 Small Madagascar hedgehog 41 29
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 42 32
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 29 21
No Yes Macropus eugenii 69_1.0 Tammar wallaby 37 27
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 34 34
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 35 35
No Yes Ornithorhynchus anatinus 69_5 Platypus 34 34
No Yes Petromyzon marinus 69_7.0 Sea lamprey 10 10
No Yes Meleagris gallopavo 69_2 Turkey 24 24
No Yes Gallus gallus 69_2 Chicken 26 26
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 27 27
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 28 28
No Yes Anolis carolinensis 69_2.0 Green anole 28 28
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 24 24
No Yes Latimeria chalumnae 69_1 Coelacanth 21 20
No Yes Gadus morhua 69_1 Atlantic cod 22 21
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 22 22
No Yes Takifugu rubripes 69_4 Torafugu 30 29
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 24 24
No Yes Oryzias latipes 69_1 Japanese medaka 21 21
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 21 21
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 28 28
No Yes Danio rerio 69_9 Zebrafish 32 32
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 5 5
No Yes Ciona intestinalis 69 Vase tunicate 10 10
No Yes Drosophila melanogaster 69_5 Fruit fly 30 30
No Yes Caenorhabditis elegans 69_215 Roundworm 15 15
No Yes Arabidopsis thaliana 10 Thale cress 13 13
No Yes 1_050719N (meta-genome)   5 5
No Yes 2_050719S (meta-genome)   4 4
No Yes 3_050719R (meta-genome)   16 16
No Yes 4_050719Q (meta-genome)   16 16
No Yes 5_050719P (meta-genome)   31 31
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   4 4
No Yes Bath Hot Springs, filamentous community (meta-genome)   3 3
No Yes Bath Hot Springs, planktonic community (meta-genome)   7 7
No Yes Combined (meta-genome)   2 2
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   12 12
No Yes Dump top (Dump top) (meta-genome)   10 10
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   3 3
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   5 5
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   11 11
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP10 from Narrow Gauge (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   23 23
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   11 11
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   11 11
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   9 9
No Yes Human Gut Community Subject 7 (meta-genome)   3 3
No Yes Human Gut Community Subject 8 (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   7 7
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   7 7
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   15 15
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   5 5
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   5 5
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   10 10
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   9 9
No Yes Mouse Gut Community lean1 (meta-genome)   2 2
No Yes Mouse Gut Community lean2 (meta-genome)   1 1
No Yes Mouse Gut Community lean3 (meta-genome)   2 2
No Yes Mouse Gut Community ob1 (meta-genome)   2 2
No Yes Mouse Gut Community ob2 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   21151 20307
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   6 6
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   14 14
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   4 4
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   4 4
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   5 5
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   15 15
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   46 46
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   16 16
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   12 12
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   17 17
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   13 13
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   8 8
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   12 12
No Yes STRING v9.0.5 (STRING)   1695 1632
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   3 3
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   13 13
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   5 5
No Yes Uniprot 2018_03 genome   19390 18564
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   19 19
No Yes Global Ocean Sampling Expedition (GOS)   37 37
No Yes NCBI plasmid sequences (Plasmids)   6 6
No Yes NCBI viral sequences (Viral)   73 73
No Yes PDB chains (SCOP 1.75) (PDB)   63 63
No Yes Protein Data Bank (all PDB sequenc)   409 409
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1215 1215
No Yes TargetDB (Targets)   28 28
No Yes UniProt viral sequences (Viral)   211 211

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]