SUPERFAMILY 1.75 HMM library and genome assignments server

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Upper collar protein gp10 (connector protein) superfamily domain assignments
in
Brachypodium distachyon

Network of domain occurrence in all genomes



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Select to display   Genome       Domains   Proteins
No Yes ALL   523 523
No Yes Lucilia cuprina Australian sheep blowfly 2 2
No Yes Enterococcus faecalis 62   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Human Gut Community Subject 7 (meta-genome)   2 2
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   5 5
No Yes NCBI 2017_08 genome   85 85
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   75 75
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI viral sequences (Viral)   20 20
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   39 39
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   273 234
No Yes UniProt viral sequences (Viral)   14 14

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]