SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Colicin superfamily domain assignments
in
Bifidobacterium adolescentis ATCC 15703

Network of domain occurrence in all genomes



No domain assignments for these genomes.


Add assignments from groups of genomes

View all assignments containing a Colicin domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   5818 5818
No Yes Pichia membranifaciensv1.0   1 1
No Yes Naegleria gruberi   1 1
No Yes Geobacillus thermoglucosidasius C56-YS93   1 1
No Yes Photorhabdus asymbiotica   1 1
No Yes Proteus mirabilis HI4320   2 2
No Yes Erwinia tasmaniensis Et1/99   1 1
No Yes Erwinia sp. Ejp617   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Erwinia amylovora ATCC 49946   1 1
No Yes Shigella sonnei Ss046   1 1
No Yes Enterobacter sp. 638   2 2
No Yes Citrobacter rodentium ICC168   1 1
No Yes Pseudomonas fluorescens SBW25   1 1
No Yes Pseudomonas aeruginosa UCBPP-PA14   1 1
No Yes Ascaris suum Victoria/Ghent Pig roundworm 4 2
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   1 1
No Yes Geobacillus sp. Y4.1MC1   1 1
No Yes Mannheimia haemolytica USMARC_2286   1 1
No Yes Mannheimia haemolytica M42548   1 1
No Yes Mannheimia haemolytica D174   1 1
No Yes Mannheimia haemolytica D171   1 1
No Yes Mannheimia haemolytica D153   1 1
No Yes Mannheimia haemolytica USDA-ARS-USMARC-183   1 1
No Yes Mannheimia haemolytica USDA-ARS-USMARC-185   1 1
No Yes Morganella morganii subsp. morganii KT   1 1
No Yes Rahnella aquatilis HX2   1 1
No Yes Serratia plymuthica S13   1 1
No Yes Serratia plymuthica 4Rx13   1 1
No Yes Serratia marcescens WW4   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Erwinia amylovora CFBP1430   1 1
No Yes Shigella sonnei 53G   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   1 1
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476   1 1
No Yes Escherichia coli UMNK88   1 1
No Yes Escherichia coli S88   1 1
No Yes Escherichia coli SMS-3-5   1 1
No Yes Escherichia coli SE11   1 1
No Yes Escherichia coli O55:H7 str. RM12579   1 1
No Yes Escherichia coli O55:H7 str. CB9615   1 1
No Yes Pseudomonas fluorescens A506   1 1
No Yes Pseudomonas aeruginosa PAO1   1 1
No Yes Combined (meta-genome)   5 5
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   9 9
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   3 3
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   5 5
No Yes NCBI 2017_08 genome   5161 5161
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   15 15
No Yes Uniprot 2018_03 genome   458 458
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI plasmid sequences (Plasmids)   57 57
No Yes PDB chains (SCOP 1.75) (PDB)   4 4
No Yes Protein Data Bank (all PDB sequenc)   7 7
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   21 21
No Yes The Salmonella enterica Pan-genome (meta-genome)   3 3

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]