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Colicin superfamily domain assignments
in
Alistipes shahii WAL 8301

Network of domain occurrence in all genomes



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View all assignments containing a Colicin domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   5818 5818
No Yes Pichia membranifaciensv1.0   1 1
No Yes Naegleria gruberi   1 1
No Yes Geobacillus thermoglucosidasius C56-YS93   1 1
No Yes Photorhabdus asymbiotica   1 1
No Yes Proteus mirabilis HI4320   2 2
No Yes Erwinia tasmaniensis Et1/99   1 1
No Yes Erwinia sp. Ejp617   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Erwinia amylovora ATCC 49946   1 1
No Yes Shigella sonnei Ss046   1 1
No Yes Enterobacter sp. 638   2 2
No Yes Citrobacter rodentium ICC168   1 1
No Yes Pseudomonas fluorescens SBW25   1 1
No Yes Pseudomonas aeruginosa UCBPP-PA14   1 1
No Yes Ascaris suum Victoria/Ghent Pig roundworm 4 2
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   1 1
No Yes Geobacillus sp. Y4.1MC1   1 1
No Yes Mannheimia haemolytica USMARC_2286   1 1
No Yes Mannheimia haemolytica M42548   1 1
No Yes Mannheimia haemolytica D174   1 1
No Yes Mannheimia haemolytica D171   1 1
No Yes Mannheimia haemolytica D153   1 1
No Yes Mannheimia haemolytica USDA-ARS-USMARC-183   1 1
No Yes Mannheimia haemolytica USDA-ARS-USMARC-185   1 1
No Yes Morganella morganii subsp. morganii KT   1 1
No Yes Rahnella aquatilis HX2   1 1
No Yes Serratia plymuthica S13   1 1
No Yes Serratia plymuthica 4Rx13   1 1
No Yes Serratia marcescens WW4   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Erwinia amylovora CFBP1430   1 1
No Yes Shigella sonnei 53G   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   1 1
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476   1 1
No Yes Escherichia coli UMNK88   1 1
No Yes Escherichia coli S88   1 1
No Yes Escherichia coli SMS-3-5   1 1
No Yes Escherichia coli SE11   1 1
No Yes Escherichia coli O55:H7 str. RM12579   1 1
No Yes Escherichia coli O55:H7 str. CB9615   1 1
No Yes Pseudomonas fluorescens A506   1 1
No Yes Pseudomonas aeruginosa PAO1   1 1
No Yes Combined (meta-genome)   5 5
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   9 9
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   3 3
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   5 5
No Yes NCBI 2017_08 genome   5161 5161
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   15 15
No Yes Uniprot 2018_03 genome   458 458
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI plasmid sequences (Plasmids)   57 57
No Yes PDB chains (SCOP 1.75) (PDB)   4 4
No Yes Protein Data Bank (all PDB sequenc)   7 7
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   21 21
No Yes The Salmonella enterica Pan-genome (meta-genome)   3 3

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