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Colicin superfamily domain assignments
in
all genomes

Network of domain occurrence in all genomes


Assignment details

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25 selected genomes have 30 significant domains in 28 proteins.

Showing genomes 1 to 25 of 62
  1 2 3   Next Last

Pichia membranifaciensv1.0 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Picme1|105890|estExt_fgenesh1_pg.C_5_t20079   0.0000536   208-277   Colicin  

Naegleria gruberi has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Naegr1|63187|fgeneshNG_pg.scaffold_6000031   0.00000759   178-267   Colicin  
 
Weak hits:
jgi|Naegr1|64468|fgeneshNG_pg.scaffold_10000109   0.0575   192-268   Colicin  
jgi|Naegr1|65877|fgeneshNG_pg.scaffold_16000029   0.0445   116-190   Colicin  
jgi|Naegr1|76369|fgeneshNG_pg.scaffold_126000001   0.0262   279-355   Colicin  
jgi|Naegr1|79063|estExt_fgeneshNG_pg.C_140053   0.0453   42-111   Colicin  

Geobacillus thermoglucosidasius C56-YS93 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|336234425|ref|YP_004587041.1|   0.0000222   27-99   Colicin  

Photorhabdus asymbiotica has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|253825516|ref|YP_003038817.1|   2.88e-54   211-421   Colicin  

Proteus mirabilis HI4320 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|172056021|ref|YP_001812482.1|   1.31e-65   286-484   Colicin  
gi|197285763|ref|YP_002151635.1|   3.4e-68   377-564   Colicin  
 
Weak hits:
gi|197285079|ref|YP_002150951.1|   0.0471   281-330   Colicin  

Erwinia tasmaniensis Et1/99 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|188533222|ref|YP_001907019.1|   1.83e-64   348-533   Colicin  

Erwinia sp. Ejp617 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|385789027|ref|YP_005820136.1|   1.83e-63   347-533   Colicin  

Erwinia pyrifoliae Ep1/96 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|259907790|ref|YP_002648146.1|   2.22e-62   347-533   Colicin  

Erwinia amylovora ATCC 49946 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|292898771|ref|YP_003538140.1|   7.72e-63   12-212   Colicin  

Shigella sonnei Ss046 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|145294032|ref|YP_001139957.1|   2.09e-93   246-521   Colicin  

Enterobacter sp. 638 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|146311866|ref|YP_001176940.1|   1.96e-69   227-423   Colicin  
gi|146312225|ref|YP_001177299.1|   3.01e-65   241-437   Colicin  

Citrobacter rodentium ICC168 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|283777787|ref|YP_003368485.1|   5.36e-84   289-516   Colicin  

Pseudomonas fluorescens SBW25 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|229589008|ref|YP_002871127.1|   1.7e-61   193-423   Colicin  

Pseudomonas aeruginosa UCBPP-PA14 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|116052603|ref|YP_792918.1|   8.89e-83   220-497   Colicin  

Ascaris suum Victoria/Ghent has 4 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
GS_02720   1.7e-83   358-577   Colicin  
  6.02e-57   2-175   Colicin  
  0.0000000000235   254-358   Colicin  
GS_03675   0.000068   245-342   Colicin  
 
Weak hits:
GS_17766   0.0162   93-198   Colicin  

Gloeobacter kilaueensis Gloeobacter sp. JS has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|554638561|ref|YP_008714205.1|   0.0000811   519-610   Colicin  
 
Weak hits:
gi|554635109|ref|YP_008710753.1|   0.0222   601-698   Colicin  

Geobacillus sp. Y4.1MC1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|312110001|ref|YP_003988317.1|   0.0000235   27-99   Colicin  

Mannheimia haemolytica USMARC_2286 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|526468031|ref|YP_008338149.1|   0.000000000102   205-371   Colicin  

Mannheimia haemolytica M42548 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|482885878|ref|YP_007883051.1|   0.000000000102   205-371   Colicin  

Mannheimia haemolytica D174 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|525664591|ref|YP_008223605.1|   0.000000000102   205-371   Colicin  

Mannheimia haemolytica D171 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|525657547|ref|YP_008220985.1|   0.0000000000942   205-371   Colicin  

Mannheimia haemolytica D153 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|525703289|ref|YP_008235070.1|   0.000000000102   205-371   Colicin  

Mannheimia haemolytica USDA-ARS-USMARC-183 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|472334622|ref|YP_007666897.1|   0.000000000102   205-371   Colicin  

Mannheimia haemolytica USDA-ARS-USMARC-185 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|472335878|ref|YP_007668152.1|   0.000000000102   205-371   Colicin  

Morganella morganii subsp. morganii KT has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|455739735|ref|YP_007506001.1|   1.57e-39   2-119   Colicin  

  1 2 3   Next Last
Showing genomes 1 to 25 of 62

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Select to display   Genome       Domains   Proteins
No Yes ALL   5818 5818
No Yes Pichia membranifaciensv1.0   1 1
No Yes Naegleria gruberi   1 1
No Yes Geobacillus thermoglucosidasius C56-YS93   1 1
No Yes Photorhabdus asymbiotica   1 1
No Yes Proteus mirabilis HI4320   2 2
No Yes Erwinia tasmaniensis Et1/99   1 1
No Yes Erwinia sp. Ejp617   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Erwinia amylovora ATCC 49946   1 1
No Yes Shigella sonnei Ss046   1 1
No Yes Enterobacter sp. 638   2 2
No Yes Citrobacter rodentium ICC168   1 1
No Yes Pseudomonas fluorescens SBW25   1 1
No Yes Pseudomonas aeruginosa UCBPP-PA14   1 1
No Yes Ascaris suum Victoria/Ghent Pig roundworm 4 2
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   1 1
No Yes Geobacillus sp. Y4.1MC1   1 1
No Yes Mannheimia haemolytica USMARC_2286   1 1
No Yes Mannheimia haemolytica M42548   1 1
No Yes Mannheimia haemolytica D174   1 1
No Yes Mannheimia haemolytica D171   1 1
No Yes Mannheimia haemolytica D153   1 1
No Yes Mannheimia haemolytica USDA-ARS-USMARC-183   1 1
No Yes Mannheimia haemolytica USDA-ARS-USMARC-185   1 1
No Yes Morganella morganii subsp. morganii KT   1 1
No Yes Rahnella aquatilis HX2   1 1
No Yes Serratia plymuthica S13   1 1
No Yes Serratia plymuthica 4Rx13   1 1
No Yes Serratia marcescens WW4   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Erwinia amylovora CFBP1430   1 1
No Yes Shigella sonnei 53G   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   1 1
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476   1 1
No Yes Escherichia coli UMNK88   1 1
No Yes Escherichia coli S88   1 1
No Yes Escherichia coli SMS-3-5   1 1
No Yes Escherichia coli SE11   1 1
No Yes Escherichia coli O55:H7 str. RM12579   1 1
No Yes Escherichia coli O55:H7 str. CB9615   1 1
No Yes Pseudomonas fluorescens A506   1 1
No Yes Pseudomonas aeruginosa PAO1   1 1
No Yes Combined (meta-genome)   5 5
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   9 9
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   3 3
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   5 5
No Yes NCBI 2017_08 genome   5161 5161
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   15 15
No Yes Uniprot 2018_03 genome   458 458
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI plasmid sequences (Plasmids)   57 57
No Yes PDB chains (SCOP 1.75) (PDB)   4 4
No Yes Protein Data Bank (all PDB sequenc)   7 7
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   21 21
No Yes The Salmonella enterica Pan-genome (meta-genome)   3 3

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