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Colicin superfamily domain assignments
in
all bacterial genomes

Network of domain occurrence in all genomes


Assignment details

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17 selected genomes have 17 significant domains in 17 proteins.

Showing genomes 26 to 42 of 42
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Serratia marcescens WW4 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|448242798|ref|YP_007406851.1|   5.76e-80   155-448   Colicin  

Erwinia pyrifoliae DSM 12163 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|387870571|ref|YP_005801942.1|   2.22e-62   347-533   Colicin  

Erwinia amylovora CFBP1430 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|292487530|ref|YP_003530402.1|   3.66e-40   12-134   Colicin  

Shigella sonnei 53G has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|383181724|ref|YP_005454583.1|   7.46e-94   246-521   Colicin  
 
Weak hits:
gi|383180042|ref|YP_005458047.1|   0.0628   32-77   Colicin  

Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|386730457|ref|YP_006200869.1|   1.22e-82   389-626   Colicin  

Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|386730561|ref|YP_006203539.1|   1.22e-82   389-626   Colicin  

Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|525819498|ref|YP_008253355.1|   1.22e-82   389-626   Colicin  

Salmonella enterica subsp. enterica serovar Heidelberg str. 41578 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|525811181|ref|YP_008248804.1|   1.22e-82   389-626   Colicin  

Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|194447260|ref|YP_002043857.1|   1.57e-82   389-626   Colicin  

Escherichia coli UMNK88 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|386611909|ref|YP_006136953.1|   1.53e-20   442-509   Colicin  

Escherichia coli S88 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|218534572|ref|YP_002401102.1|   2.75e-79   389-626   Colicin  

Escherichia coli SMS-3-5 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|170650746|ref|YP_001739880.1|   1.57e-92   246-521   Colicin  

Escherichia coli SE11 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|209921971|ref|YP_002296044.1|   4.32e-78   389-626   Colicin  

Escherichia coli O55:H7 str. RM12579 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|387504891|ref|YP_006162149.1|   3.27e-79   389-626   Colicin  
 
Weak hits:
gi|387509746|ref|YP_006162002.1|   0.0889   149-234   Colicin  

Escherichia coli O55:H7 str. CB9615 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|291285901|ref|YP_003502718.1|   3.27e-79   389-626   Colicin  
 
Weak hits:
gi|291285683|ref|YP_003502501.1|   0.0889   149-234   Colicin  

Pseudomonas fluorescens A506 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|387892633|ref|YP_006322930.1|   3.27e-60   207-423   Colicin  

Pseudomonas aeruginosa PAO1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|15596182|ref|NP_249676.1|   1.57e-81   220-497   Colicin  

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Showing genomes 26 to 42 of 42

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View all assignments containing a Colicin domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   5818 5818
No Yes Pichia membranifaciensv1.0   1 1
No Yes Naegleria gruberi   1 1
No Yes Geobacillus thermoglucosidasius C56-YS93   1 1
No Yes Photorhabdus asymbiotica   1 1
No Yes Proteus mirabilis HI4320   2 2
No Yes Erwinia tasmaniensis Et1/99   1 1
No Yes Erwinia sp. Ejp617   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Erwinia amylovora ATCC 49946   1 1
No Yes Shigella sonnei Ss046   1 1
No Yes Enterobacter sp. 638   2 2
No Yes Citrobacter rodentium ICC168   1 1
No Yes Pseudomonas fluorescens SBW25   1 1
No Yes Pseudomonas aeruginosa UCBPP-PA14   1 1
No Yes Ascaris suum Victoria/Ghent Pig roundworm 4 2
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   1 1
No Yes Geobacillus sp. Y4.1MC1   1 1
No Yes Mannheimia haemolytica USMARC_2286   1 1
No Yes Mannheimia haemolytica M42548   1 1
No Yes Mannheimia haemolytica D174   1 1
No Yes Mannheimia haemolytica D171   1 1
No Yes Mannheimia haemolytica D153   1 1
No Yes Mannheimia haemolytica USDA-ARS-USMARC-183   1 1
No Yes Mannheimia haemolytica USDA-ARS-USMARC-185   1 1
No Yes Morganella morganii subsp. morganii KT   1 1
No Yes Rahnella aquatilis HX2   1 1
No Yes Serratia plymuthica S13   1 1
No Yes Serratia plymuthica 4Rx13   1 1
No Yes Serratia marcescens WW4   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Erwinia amylovora CFBP1430   1 1
No Yes Shigella sonnei 53G   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   1 1
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476   1 1
No Yes Escherichia coli UMNK88   1 1
No Yes Escherichia coli S88   1 1
No Yes Escherichia coli SMS-3-5   1 1
No Yes Escherichia coli SE11   1 1
No Yes Escherichia coli O55:H7 str. RM12579   1 1
No Yes Escherichia coli O55:H7 str. CB9615   1 1
No Yes Pseudomonas fluorescens A506   1 1
No Yes Pseudomonas aeruginosa PAO1   1 1
No Yes Combined (meta-genome)   5 5
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   9 9
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   3 3
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   5 5
No Yes NCBI 2017_08 genome   5161 5161
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   15 15
No Yes Uniprot 2018_03 genome   458 458
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI plasmid sequences (Plasmids)   57 57
No Yes PDB chains (SCOP 1.75) (PDB)   4 4
No Yes Protein Data Bank (all PDB sequenc)   7 7
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   21 21
No Yes The Salmonella enterica Pan-genome (meta-genome)   3 3

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