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Bcl-2 inhibitors of programmed cell death superfamily domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 29 significant domains in 29 proteins.

     

Sequence ID   Evalue   Region   Family  
1af3A   7.33e-73   3-24,82-196   Bcl-2 inhibitors of programmed cell death  
1ddbA   4.9e-81   1-195   Bcl-2 inhibitors of programmed cell death  
1f16A   6.83e-60   26-165   Bcl-2 inhibitors of programmed cell death  
1g5jA   3.3e-72   7-160   Bcl-2 inhibitors of programmed cell death  
1g5mA   3.57e-70   11-162   Bcl-2 inhibitors of programmed cell death  
1gjhA   4.91e-71   11-162   Bcl-2 inhibitors of programmed cell death  
1k3kA   8.96e-34   1-144   Bcl-2 inhibitors of programmed cell death  
1mazA   3.44e-72   7-28,86-200   Bcl-2 inhibitors of programmed cell death  
1o0lA   1.84e-59   14-152   Bcl-2 inhibitors of programmed cell death  
1ohuA   6.45e-36   4-165   Bcl-2 inhibitors of programmed cell death  
1pq1A   1.68e-72   3-24,82-196   Bcl-2 inhibitors of programmed cell death  
1q59A   7.43e-53   1-161   Bcl-2 inhibitors of programmed cell death  
1r2dA   3.3e-72   3-24,82-196   Bcl-2 inhibitors of programmed cell death  
1r2eA   1.9e-71   3-24,82-196   Bcl-2 inhibitors of programmed cell death  
1r2gA   7.33e-70   3-24,82-196   Bcl-2 inhibitors of programmed cell death  
1r2hA   1.47e-70   3-24,82-196   Bcl-2 inhibitors of programmed cell death  
1r2iA   2.8e-71   3-24,82-196   Bcl-2 inhibitors of programmed cell death  
1ty4A   8.48e-36   4-165   Bcl-2 inhibitors of programmed cell death  
1ysgA   3.74e-72   7-160   Bcl-2 inhibitors of programmed cell death  
1zy3A   3.07e-58   8-146   Bcl-2 inhibitors of programmed cell death  
2a5yA   9.52e-36   24-186   Bcl-2 inhibitors of programmed cell death  
2aboA   1.01e-88   6-136   Bcl-2 inhibitors of programmed cell death  
2bidA   6.12e-79   2-196   Bcl-2 inhibitors of programmed cell death  
2bzwA   2.2e-72   3-24,82-196   Bcl-2 inhibitors of programmed cell death  
2jm6B   5.68e-54   12-154   Bcl-2 inhibitors of programmed cell death  
2o22A   4.62e-71   7-159   Bcl-2 inhibitors of programmed cell death  
2ponB   2.12e-72   3-156   Bcl-2 inhibitors of programmed cell death  
3bl2A   4.13e-88   2-131   Bcl-2 inhibitors of programmed cell death  
3dvuA   1.38e-88   7-137   Bcl-2 inhibitors of programmed cell death  

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Select to display   Genome       Domains   Proteins
No Yes ALL   15117 15117
No Yes Homo sapiens 76_38 Human 74 74
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 15 15
No Yes Gorilla gorilla 76_3.1 Western gorilla 19 19
No Yes Pongo abelii 76_2 Sumatran orangutan 14 14
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 14 14
No Yes Papio anubis 76 Olive baboon 17 17
No Yes Macaca mulatta 76_1 Rhesus monkey 22 21
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 27 27
No Yes Otolemur garnettii 76_3 Small-eared galago 15 15
No Yes Microcebus murinus 76_1 Gray mouse lemur 8 8
No Yes Rattus norvegicus 76_5.0 Norway rat 16 16
No Yes Mus musculus 76_38 House mouse 37 37
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 10 10
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 19 19
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 12 12
No Yes Cavia porcellus 76_3 Domestic guinea pig 14 14
No Yes Oryctolagus cuniculus 76_2 Rabbit 17 17
No Yes Ochotona princeps 76 American pika 14 14
No Yes Tupaia belangeri 76 Northern tree shrew 9 9
No Yes Sus scrofa 76_10.2 Pig 15 15
No Yes Bos taurus 76_3.1 Cattle 19 19
No Yes Ovis aries 76_3.1 Sheep 16 16
No Yes Vicugna pacos 76_1 Alpaca 4 4
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 15 14
No Yes Mustela putorius furo 76_1.0 Domestic ferret 13 13
No Yes Ailuropoda melanoleuca 76_1 Giant panda 16 16
No Yes Canis familiaris 76_3.1 Dog 18 18
No Yes Felis catus 76_6.2 Domestic cat 14 14
No Yes Equus caballus 76_2 Horse 16 16
No Yes Myotis lucifugus 76_2.0 Little brown bat 14 14
No Yes Pteropus vampyrus 76_1 Large flying fox 14 13
No Yes Sorex araneus 76_1 European shrew 8 8
No Yes Erinaceus europaeus 76 Western European hedgehog 5 5
No Yes Procavia capensis 76_1 Cape rock hyrax 10 10
No Yes Loxodonta africana 76_3 African savanna elephant 18 18
No Yes Echinops telfairi 76 Small Madagascar hedgehog 8 8
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 14 14
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 9 8
No Yes Macropus eugenii 76_1.0 Tammar wallaby 10 9
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 14 14
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 13 13
No Yes Ornithorhynchus anatinus 76_5 Platypus 6 6
No Yes Saccoglossus kowalevskii v3.0   16 16
No Yes Petromyzon marinus 76_7.0 Sea lamprey 3 3
No Yes Meleagris gallopavo 76_2 Turkey 13 13
No Yes Gallus gallus 76_4 Chicken 10 10
No Yes Anas platyrhynchos 76_1.0 Mallard 13 13
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 8 8
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 10 10
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 12 12
No Yes Anolis carolinensis 76_2.0 Green anole 11 11
No Yes Xenopus laevis African clawed frog 30 30
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 11 11
No Yes Latimeria chalumnae 76_1 Coelacanth 13 13
No Yes Lepisosteus oculatus 76 Spotted gar 14 14
No Yes Gadus morhua 76_1 Atlantic cod 11 11
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 12 12
No Yes Takifugu rubripes 76_4 Torafugu 20 20
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 14 14
No Yes Oryzias latipes 76_1 Japanese medaka 11 11
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 12 12
No Yes Poecilia formosa 76 Amazon molly 11 11
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 16 16
No Yes Astyanax mexicanus 76 Mexican tetra 19 19
No Yes Danio rerio 76_9 Zebrafish 28 28
No Yes Oikopleura dioica   2 2
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 2 2
No Yes Ciona intestinalis 76 Vase tunicate 4 4
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 11 11
No Yes Adineta vaga   5 5
No Yes Octopus bimaculoides 280   8 8
No Yes Crassostrea gigas 22 Pacific oyster 9 8
No Yes Lottia gigantea Owl limpet 8 8
No Yes Helobdella robusta   11 11
No Yes Capitella sp. I   13 13
No Yes Danaus plexippus OGS1.0 Monarch butterfly 2 2
No Yes Heliconius melpomene Postman butterfly 1 1
No Yes Bombyx mori Domestic silkworm 1 1
No Yes Nasonia vitripennis Jewel wasp 1 1
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 2 2
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 1 1
No Yes Linepithema humile v1.1 Argentine ant 1 1
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 1 1
No Yes Solenopsis invicta v.2.2.3 Red fire ant 1 1
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 1 1
No Yes Atta cephalotes v1.1   1 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 1 1
No Yes Lucilia cuprina Australian sheep blowfly 2 2
No Yes Drosophila grimshawi 1.3   2 2
No Yes Drosophila willistoni 1.3   2 2
No Yes Drosophila pseudoobscura 2.13   2 2
No Yes Drosophila persimilis 1.3   2 2
No Yes Drosophila suzukii   2 2
No Yes Drosophila yakuba 1.3   2 2
No Yes Drosophila simulans 1.3   1 1
No Yes Drosophila sechellia 1.3   2 2
No Yes Drosophila melanogaster 76_5 Fruit fly 2 2
No Yes Drosophila erecta 1.3   2 2
No Yes Drosophila ananassae 1.3   2 2
No Yes Drosophila virilis 1.2   2 2
No Yes Drosophila mojavensis 1.3   2 2
No Yes Megaselia scalaris 22   2 2
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 2 2
No Yes Culex pipiens quinquefasciatus Southern house mosquito 2 2
No Yes Anopheles darlingi 22 American malaria mosquito 3 3
No Yes Anopheles gambiae 49_3j African malaria mosquito 1 1
No Yes Tribolium castaneum 3.0 Red flour beetle 1 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 1 1
No Yes Acyrthosiphon pisum Pea aphid 1 1
No Yes Rhodnius prolixus 22   2 2
No Yes Daphnia pulex Common water flea 2 2
No Yes Strigamia maritima 22   3 3
No Yes Sarcoptes scabiei   2 2
No Yes Tetranychus urticae Two-spotted spider mite 7 7
No Yes Ixodes scapularis (Preliminary) Black-legged tick 3 3
No Yes Pristionchus pacificus   2 2
No Yes Onchocerca volvulus 22   1 1
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 2 2
No Yes Caenorhabditis japonica   2 2
No Yes Caenorhabditis remanei   1 1
No Yes Caenorhabditis elegans 76_235 Roundworm 1 1
No Yes Caenorhabditis briggsae 2   1 1
No Yes Trichinella spiralis 22   1 1
No Yes Hymenolepis microstoma   3 3
No Yes Echinococcus multilocularis   3 3
No Yes Echinococcus granulosus   4 3
No Yes Taenia solium Pork tapeworm 2 2
No Yes Schistosoma mansoni   5 5
No Yes Mnemiopsis leidyi Sea walnut 1 1
No Yes Acropora digitifera v1.0   9 9
No Yes Nematostella vectensis 1.0 Starlet sea anemone 14 14
No Yes Hydra vulgaris   13 13
No Yes Amphimedon queenslandica   7 7
No Yes Trichoplax adhaerens   3 3
No Yes Melampsora laricis-populina   1 1
No Yes Anabaena variabilis ATCC 29413   1 1
No Yes Nostoc sp. PCC 7120   1 1
No Yes Providencia stuartii MRSN 2154   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 21 21
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 2 2
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 1 1
No Yes Ascaris suum Victoria/Ghent Pig roundworm 1 1
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 67 67
No Yes Homo sapiens (NCBI version) Human 29 29
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 18 18
No Yes Loa loa v3.3 (Request) Eye worm 2 2
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 2 1
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 2 1
No Yes Homo sapiens 69_37 Human 15 15
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 14 14
No Yes Gorilla gorilla 69_3.1 Western gorilla 14 14
No Yes Pongo abelii 69_2 Sumatran orangutan 14 14
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 14 14
No Yes Macaca mulatta 69_1 Rhesus monkey 13 13
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 15 15
No Yes Otolemur garnettii 69_3 Small-eared galago 15 15
No Yes Microcebus murinus 69_1 Gray mouse lemur 8 8
No Yes Rattus norvegicus 69_3.4 Norway rat 18 18
No Yes Mus musculus 69_38 House mouse 18 18
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 10 10
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 16 16
No Yes Cavia porcellus 69_3 Domestic guinea pig 14 14
No Yes Oryctolagus cuniculus 69_2 Rabbit 14 14
No Yes Ochotona princeps 69 American pika 14 14
No Yes Tupaia belangeri 69 Northern tree shrew 9 9
No Yes Sus scrofa 69_10.2 Pig 14 14
No Yes Bos taurus 69_3.1 Cattle 16 16
No Yes Vicugna pacos 69_1 Alpaca 4 4
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 15 14
No Yes Mustela putorius furo 69_1.0 Domestic ferret 13 13
No Yes Ailuropoda melanoleuca 69_1 Giant panda 14 14
No Yes Canis familiaris 69_3.1 Dog 13 13
No Yes Felis catus 69 Domestic cat 13 13
No Yes Equus caballus 69_2 Horse 15 15
No Yes Myotis lucifugus 69_2.0 Little brown bat 13 13
No Yes Pteropus vampyrus 69_1 Large flying fox 14 13
No Yes Sorex araneus 69_1 European shrew 8 8
No Yes Erinaceus europaeus 69 Western European hedgehog 5 5
No Yes Procavia capensis 69_1 Cape rock hyrax 10 10
No Yes Loxodonta africana 69_3 African savanna elephant 13 13
No Yes Echinops telfairi 69 Small Madagascar hedgehog 8 8
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 10 10
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 9 8
No Yes Macropus eugenii 69_1.0 Tammar wallaby 10 9
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 10 10
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 13 13
No Yes Ornithorhynchus anatinus 69_5 Platypus 5 5
No Yes Petromyzon marinus 69_7.0 Sea lamprey 3 3
No Yes Meleagris gallopavo 69_2 Turkey 10 10
No Yes Gallus gallus 69_2 Chicken 10 10
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 8 8
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 10 10
No Yes Anolis carolinensis 69_2.0 Green anole 9 9
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 11 11
No Yes Latimeria chalumnae 69_1 Coelacanth 10 10
No Yes Gadus morhua 69_1 Atlantic cod 11 11
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 11 11
No Yes Takifugu rubripes 69_4 Torafugu 13 13
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 11 11
No Yes Oryzias latipes 69_1 Japanese medaka 9 9
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 12 12
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 14 14
No Yes Danio rerio 69_9 Zebrafish 17 17
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 2 2
No Yes Ciona intestinalis 69 Vase tunicate 4 4
No Yes Drosophila melanogaster 69_5 Fruit fly 2 2
No Yes Caenorhabditis elegans 69_215 Roundworm 1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   6548 6533
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   399 399
No Yes Uniprot 2018_03 genome   3727 3700
No Yes NCBI viral sequences (Viral)   34 34
No Yes PDB chains (SCOP 1.75) (PDB)   29 29
No Yes Protein Data Bank (all PDB sequenc)   503 503
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   802 802
No Yes TargetDB (Targets)   26 26
No Yes UniProt viral sequences (Viral)   81 81

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