SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Anthrax protective antigen superfamily domain assignments
in
Leptothrix cholodnii SP-6

Assignment details

(show help)


Leptothrix cholodnii SP-6 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|171060997|ref|YP_001793346.1|   0.0000000275   407-525,558-606   Anthrax protective antigen  
 
Weak hits:
gi|171058813|ref|YP_001791162.1|   0.0196   144-216   Anthrax protective antigen  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a Anthrax protective antigen domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   29611 29611
No Yes Homo sapiens 76_38 Human 3 3
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 2 2
No Yes Gorilla gorilla 76_3.1 Western gorilla 3 3
No Yes Pongo abelii 76_2 Sumatran orangutan 1 1
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 1 1
No Yes Papio anubis 76 Olive baboon 2 2
No Yes Macaca mulatta 76_1 Rhesus monkey 1 1
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 6 6
No Yes Otolemur garnettii 76_3 Small-eared galago 2 2
No Yes Microcebus murinus 76_1 Gray mouse lemur 2 2
No Yes Rattus norvegicus 76_5.0 Norway rat 3 3
No Yes Mus musculus 76_38 House mouse 3 3
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 1 1
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 2 2
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 1 1
No Yes Cavia porcellus 76_3 Domestic guinea pig 1 1
No Yes Oryctolagus cuniculus 76_2 Rabbit 2 2
No Yes Sus scrofa 76_10.2 Pig 2 2
No Yes Bos taurus 76_3.1 Cattle 2 2
No Yes Ovis aries 76_3.1 Sheep 3 3
No Yes Vicugna pacos 76_1 Alpaca 1 1
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 2 2
No Yes Mustela putorius furo 76_1.0 Domestic ferret 2 2
No Yes Ailuropoda melanoleuca 76_1 Giant panda 2 2
No Yes Canis familiaris 76_3.1 Dog 3 3
No Yes Felis catus 76_6.2 Domestic cat 2 2
No Yes Equus caballus 76_2 Horse 7 7
No Yes Myotis lucifugus 76_2.0 Little brown bat 5 5
No Yes Pteropus vampyrus 76_1 Large flying fox 2 2
No Yes Sorex araneus 76_1 European shrew 1 1
No Yes Erinaceus europaeus 76 Western European hedgehog 2 2
No Yes Procavia capensis 76_1 Cape rock hyrax 2 2
No Yes Loxodonta africana 76_3 African savanna elephant 3 3
No Yes Echinops telfairi 76 Small Madagascar hedgehog 2 2
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 2 2
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 1 1
No Yes Macropus eugenii 76_1.0 Tammar wallaby 1 1
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 2 2
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 2 2
No Yes Ornithorhynchus anatinus 76_5 Platypus 1 1
No Yes Petromyzon marinus 76_7.0 Sea lamprey 1 1
No Yes Meleagris gallopavo 76_2 Turkey 1 1
No Yes Gallus gallus 76_4 Chicken 1 1
No Yes Anas platyrhynchos 76_1.0 Mallard 1 1
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 1 1
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 1 1
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 2 2
No Yes Latimeria chalumnae 76_1 Coelacanth 1 1
No Yes Lepisosteus oculatus 76 Spotted gar 2 2
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 2 2
No Yes Takifugu rubripes 76_4 Torafugu 2 2
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 2 2
No Yes Oryzias latipes 76_1 Japanese medaka 1 1
No Yes Danio rerio 76_9 Zebrafish 5 5
No Yes Oikopleura dioica   2 2
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 2 2
No Yes Crassostrea gigas 22 Pacific oyster 2 2
No Yes Lottia gigantea Owl limpet 1 1
No Yes Acropora digitifera v1.0   15 15
No Yes Nematostella vectensis 1.0 Starlet sea anemone 12 11
No Yes Hydra vulgaris   8 8
No Yes Amphimedon queenslandica   2 2
No Yes Trichoplax adhaerens   2 2
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   22 6
No Yes Sphaeroforma arctica JP610   6 6
No Yes Capsaspora owczarzaki ATCC 30864   3 3
No Yes Conidiobolus coronatus NRRL28638 v1.0   1 1
No Yes Mortierella verticillata NRRL 6337   1 1
No Yes Coniophora puteana   1 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   2 2
No Yes Heterobasidion annosum   1 1
No Yes Tulasnella calospora AL13/4D v1.0   2 2
No Yes Postia placenta   2 2
No Yes Wolfiporia cocos MD-104 SS10 v1.0   1 1
No Yes Trametes versicolor v1.0   1 1
No Yes Daldinia eschscholzii EC12 v1.0   1 1
No Yes Apiospora montagnei NRRL 25634 v1.0   1 1
No Yes Magnaporthe grisea 70-15   1 1
No Yes Verticillium albo-atrum VaMs.102   2 2
No Yes Verticillium dahliae VdLs.17   3 3
No Yes Fusarium graminearum   4 4
No Yes Nectria haematococca mpVI   5 5
No Yes Fusarium oxysporum f. sp. lycopersici 4286   3 3
No Yes Fusarium verticillioides 7600   2 2
No Yes Trichoderma asperellum CBS 433.97 v1.0   1 1
No Yes Trichoderma atroviride   1 1
No Yes Trichoderma virens Gv29-8   1 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   1 1
No Yes Botrytis cinerea B05.10   2 2
No Yes Didymella exigua CBS 183.55 v1.0   1 1
No Yes Leptosphaeria maculans 22   1 1
No Yes Setosphaeria turcica v1.0   1 1
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   1 1
No Yes Cochliobolus victoriae FI3 v1.0   1 1
No Yes Cochliobolus carbonum 26-R-13 v1.0   1 1
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 1 1
No Yes Alternaria brassicicola   1 1
No Yes Cochliobolus lunatus m118 v2.0   1 1
No Yes Pyrenophora tritici-repentis   1 1
No Yes Stagonospora nodorum   1 1
No Yes Mycosphaerella graminicola IPO323   4 3
No Yes Mycosphaerella fijiensis CIRAD86   1 1
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   3 3
No Yes Aspergillus zonatus v1.0   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   2 2
No Yes Penicillium chrysogenum v1.0   2 2
No Yes Aspergillus acidus v1.0   2 2
No Yes Aspergillus fumigatus Af293   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus nidulans FGSC A4   1 1
No Yes Aspergillus sydowii v1.0   1 1
No Yes Aspergillus carbonarius ITEM 5010   1 1
No Yes Neosartorya fischeri NRRL 181   2 2
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus oryzae RIB40   1 1
No Yes Aspergillus niger 22   2 2
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Aspergillus flavus NRRL3357   1 1
No Yes Aspergillus clavatus NRRL 1   1 1
No Yes Penicillium marneffei ATCC 18224   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Dekkera bruxellensis CBS 2499 v2.0   7 7
No Yes Pichia membranifaciensv1.0   1 1
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   2 2
No Yes Candida guilliermondii ATCC 6260   2 2
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   1 1
No Yes Debaromyces hansenii   1 1
No Yes Pichia pastoris GS115   1 1
No Yes Candida lusitaniae ATCC 42720   4 4
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   5 5
No Yes Candida glabrata CBS138   9 8
No Yes Kluyveromyces thermotolerans CBS 6340   1 1
No Yes Lachancea kluyveri   1 1
No Yes Saccharomyces mikatae MIT   3 3
No Yes Saccharomyces paradoxus MIT   2 2
No Yes Saccharomyces cerevisiae 76 Baker's yeast 2 2
No Yes Saccharomyces bayanus MIT   1 1
No Yes Kluyveromyces lactis   3 3
No Yes Schizosaccharomyces pombe Fission yeast 1 1
No Yes Spizellomyces punctatus DAOM BR117   1 1
No Yes Dictyostelium discoideum   1 1
No Yes Dictyostelium purpureum   2 2
No Yes Asterochloris sp. Cgr/DA1pho v1.0   1 1
No Yes Chlorella variabilis sp. NC64A   4 3
No Yes Volvox carteri f. nagariensis   3 3
No Yes Volvox carteri v199   3 3
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   2 2
No Yes Bigelowiella natans CCMP2755 22   6 3
No Yes Cyanophora paradoxa   1 1
No Yes Ectocarpus siliculosus   5 2
No Yes Aureococcus anophagefferens   5 2
No Yes Albugo laibachii 22   6 2
No Yes Pythium iwayamai DAOM BR242034 22   6 2
No Yes Pythium arrhenomanes ATCC 12531 22   6 2
No Yes Pythium ultimum v1.7-2   6 2
No Yes Pythium aphanidermatum DAOM BR444 22   6 2
No Yes Pythium irregulare DAOM BR486 22   6 2
No Yes Pythium vexans DAOM BR484 22   6 2
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 3 1
No Yes Phytophthora sojae 1.1   3 1
No Yes Phytophthora infestans T30-4   6 2
No Yes Perkinsus marinus ATCC 50983   11 7
No Yes Paramecium tetraurelia   2 2
No Yes Cryptosporidium hominis   1 1
No Yes Cryptosporidium muris   1 1
No Yes Cryptosporidium parvum Iowa II   1 1
No Yes Neospora caninum   3 3
No Yes Toxoplasma gondii VEG   2 2
No Yes Toxoplasma gondii ME49   2 2
No Yes Toxoplasma gondii GT1   2 2
No Yes Babesia bovis T2Bo   4 4
No Yes Theileria parva   2 2
No Yes Theileria annulata   2 2
No Yes Plasmodium falciparum 3D7   3 3
No Yes Plasmodium vivax SaI-1 7.0   3 3
No Yes Plasmodium knowlesi strain H   3 3
No Yes Plasmodium yoelii ssp. yoelii 1   3 3
No Yes Plasmodium chabaudi   2 2
No Yes Plasmodium berghei ANKA   3 3
No Yes Symbiodinium minutum clade B1 v1.2   22 13
No Yes Trichomonas vaginalis   3 3
No Yes Guillardia theta CCMP2712 v1.0   41 20
No Yes Thermobaculum terrenum ATCC BAA-798   2 2
No Yes Microcoleus sp. PCC 7113   1 1
No Yes Nostoc punctiforme PCC 73102   3 1
No Yes Anabaena sp. 90   2 1
No Yes Ilumatobacter coccineus   2 1
No Yes Modestobacter marinus   1 1
No Yes Frankia symbiont of Datisca glomerata   1 1
No Yes Frankia alni ACN14a   3 1
No Yes Streptomyces coelicolor A3(2)   2 2
No Yes Streptomyces sp. PAMC26508   3 3
No Yes Streptomyces flavogriseus ATCC 33331   3 3
No Yes Streptomyces sp. SirexAA-E   2 2
No Yes Streptomyces griseus subsp. griseus NBRC 13350   4 4
No Yes Streptomyces bingchenggensis BCW-1   3 3
No Yes Streptomyces violaceusniger Tu 4113   3 3
No Yes Streptomyces avermitilis MA-4680   1 1
No Yes Streptomyces scabiei 87.22   1 1
No Yes Actinosynnema mirum DSM 43827   3 2
No Yes Saccharopolyspora erythraea NRRL 2338   1 1
No Yes Amycolatopsis mediterranei U32   2 1
No Yes Actinoplanes missouriensis 431   1 1
No Yes Tsukamurella paurometabola DSM 20162   1 1
No Yes Rhodococcus jostii RHA1   1 1
No Yes Amycolicicoccus subflavus DQS3-9A1   1 1
No Yes Beutenbergia cavernae DSM 12333   4 1
No Yes Microbacterium testaceum StLB037   1 1
No Yes Clavibacter michiganensis subsp. michiganensis NCPPB 382   2 1
No Yes Isoptericola variabilis 225   1 1
No Yes Cellulomonas flavigena DSM 20109   3 2
No Yes Cellulomonas fimi ATCC 484   2 2
No Yes Caldilinea aerophila DSM 14535 = NBRC 104270   13 7
No Yes Anaerolinea thermophila UNI-1   2 1
No Yes Herpetosiphon aurantiacus DSM 785   1 1
No Yes Roseiflexus sp. RS-1   4 4
No Yes Roseiflexus castenholzii DSM 13941   3 3
No Yes Chloroflexus sp. MS-G   3 2
No Yes Chloroflexus sp. Y-400-fl   5 3
No Yes Chloroflexus aggregans DSM 9485   2 2
No Yes Chloroflexus aurantiacus J-10-fl   5 3
No Yes Meiothermus ruber DSM 1279   1 1
No Yes Clostridium clariflavum DSM 19732   2 1
No Yes Clostridium cellulolyticum H10   1 1
No Yes Clostridium thermocellum ATCC 27405   2 1
No Yes Clostridium lentocellum DSM 5427   1 1
No Yes Syntrophothermus lipocalidus DSM 12680   1 1
No Yes Clostridium sp. BNL1100   1 1
No Yes Paenibacillus sp. JDR-2   4 4
No Yes Paenibacillus terrae HPL-003   1 1
No Yes Paenibacillus polymyxa M1   1 1
No Yes Bacillus weihenstephanensis KBAB4   1 1
No Yes Bacillus cereus 03BB102   2 2
No Yes Bacillus anthracis str. A0248   1 1
No Yes Melioribacter roseus P3M   4 4
No Yes Chlorobium phaeovibrioides DSM 265   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   6 6
No Yes Niastella koreensis GR20-10   7 7
No Yes Chitinophaga pinensis DSM 2588   7 6
No Yes Rhodothermus marinus DSM 4252   2 2
No Yes Cyclobacterium marinum DSM 745   2 2
No Yes Fibrella aestuarina   4 4
No Yes Leadbetterella byssophila DSM 17132   3 3
No Yes Dyadobacter fermentans DSM 18053   3 3
No Yes Spirosoma linguale DSM 74   8 7
No Yes Runella slithyformis DSM 19594   2 2
No Yes Parabacteroides distasonis ATCC 8503   4 4
No Yes Tannerella forsythia ATCC 43037   1 1
No Yes Paludibacter propionicigenes WB4   3 3
No Yes Prevotella ruminicola 23   2 2
No Yes Alistipes finegoldii DSM 17242   3 3
No Yes Bacteroides salanitronis DSM 18170   2 2
No Yes Bacteroides helcogenes P 36-108   3 3
No Yes Bacteroides vulgatus ATCC 8482   2 2
No Yes Bacteroides thetaiotaomicron VPI-5482   5 5
No Yes Bacteroides fragilis YCH46   4 4
No Yes Pedobacter saltans DSM 12145   4 4
No Yes Solitalea canadensis DSM 3403   2 2
No Yes Pedobacter heparinus DSM 2366   1 1
No Yes Sphingobacterium sp. 21   1 1
No Yes Fluviicola taffensis DSM 16823   1 1
No Yes Zunongwangia profunda SM-A87   2 2
No Yes Maribacter sp. HTCC2170   1 1
No Yes Zobellia galactanivorans   5 5
No Yes Muricauda ruestringensis DSM 13258   2 2
No Yes Riemerella anatipestifer ATCC 11845 = DSM 15868   1 1
No Yes Capnocytophaga canimorsus Cc5   1 1
No Yes Flavobacterium johnsoniae UW101   4 4
No Yes Phycisphaera mikurensis NBRC 102666   1 1
No Yes Isosphaera pallida ATCC 43644   3 3
No Yes Planctomyces brasiliensis DSM 5305   3 3
No Yes Planctomyces limnophilus DSM 3776   2 2
No Yes Rhodopirellula baltica SH 1   5 4
No Yes Pirellula staleyi DSM 6068   6 5
No Yes Coraliomargarita akajimensis DSM 45221   2 1
No Yes Opitutus terrae PB90-1   4 2
No Yes Akkermansia muciniphila ATCC BAA-835   8 8
No Yes Candidatus Solibacter usitatus Ellin6076   6 5
No Yes Granulicella tundricola MP5ACTX9   1 1
No Yes Granulicella mallensis MP5ACTX8   4 4
No Yes Candidatus Koribacter versatilis Ellin345   2 2
No Yes Terriglobus saanensis SP1PR4   1 1
No Yes Terriglobus roseus DSM 18391   1 1
No Yes Acidobacterium capsulatum ATCC 51196   2 2
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Desulfomonile tiedjei DSM 6799   1 1
No Yes Desulfotalea psychrophila LSv54   1 1
No Yes Desulfobacterium autotrophicum HRM2   1 1
No Yes Hippea maritima DSM 10411   1 1
No Yes Pelobacter carbinolicus DSM 2380   1 1
No Yes Haliangium ochraceum DSM 14365   2 2
No Yes Sorangium cellulosum 'So ce 56'   2 2
No Yes Stigmatella aurantiaca DW4/3-1   1 1
No Yes Corallococcus coralloides DSM 2259   3 2
No Yes Pseudogulbenkiania sp. NH8B   1 1
No Yes Leptothrix cholodnii SP-6   1 1
No Yes Asticcacaulis excentricus CB 48   4 4
No Yes Caulobacter sp. K31   3 3
No Yes Caulobacter crescentus NA1000   1 1
No Yes Caulobacter segnis ATCC 21756   2 2
No Yes Phenylobacterium zucineum HLK1   1 1
No Yes Novosphingobium sp. PP1Y   1 1
No Yes Novosphingobium aromaticivorans DSM 12444   1 1
No Yes Sphingobium japonicum UT26S   1 1
No Yes Hirschia baltica ATCC 49814   1 1
No Yes Ruegeria sp. TM1040   1 1
No Yes Ketogulonicigenium vulgare Y25   2 2
No Yes Ketogulonigenium vulgarum WSH-001   2 2
No Yes Roseobacter litoralis Och 149   2 1
No Yes Roseobacter denitrificans OCh 114   2 1
No Yes Rhizobium etli CIAT 652   1 1
No Yes Rhizobium leguminosarum bv. viciae 3841   1 1
No Yes Agrobacterium radiobacter K84   2 2
No Yes Agrobacterium vitis S4   1 1
No Yes Pelagibacterium halotolerans B2   1 1
No Yes Saccharophagus degradans 2-40   5 4
No Yes Teredinibacter turnerae T7901   3 3
No Yes Cellvibrio japonicus Ueda107   3 2
No Yes Psychromonas sp. CNPT3   1 1
No Yes Shewanella halifaxensis HAW-EB4   1 1
No Yes Shewanella pealeana ATCC 700345   1 1
No Yes Shewanella violacea DSS12   1 1
No Yes Marinobacter adhaerens HP15   2 1
No Yes Marinobacter sp. BSs20148   2 1
No Yes Marinobacter hydrocarbonoclasticus ATCC 49840   3 2
No Yes Marinobacter aquaeolei VT8   2 1
No Yes Methylomonas methanica MC09   2 2
No Yes Dichelobacter nodosus VCS1703A   1 1
No Yes Pseudoxanthomonas suwonensis 11-1   3 3
No Yes Xylella fastidiosa M23   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   3 3
No Yes Xanthomonas albilineans GPE PC73   3 3
No Yes Xanthomonas oryzae pv. oryzae PXO99A   3 3
No Yes Xanthomonas campestris pv. campestris str. B100   3 3
No Yes Pseudomonas sp. TKP   1 1
No Yes Pseudomonas syringae pv. tomato str. DC3000   1 1
No Yes Pseudomonas fluorescens SBW25   1 1
No Yes Pyrolobus fumarii 1A   1 1
No Yes Thermogladius cellulolyticus 1633   1 1
No Yes Thermosphaera aggregans DSM 11486   1 1
No Yes Staphylothermus hellenicus DSM 12710   1 1
No Yes Staphylothermus marinus F1   1 1
No Yes Desulfurococcus fermentans DSM 16532   1 1
No Yes Desulfurococcus kamchatkensis 1221n   1 1
No Yes Desulfurococcus mucosus DSM 2162   1 1
No Yes Caldivirga maquilingensis IC-167   1 1
No Yes Thermoproteus uzoniensis 768-20   1 1
No Yes Methanocella arvoryzae MRE50   1 1
No Yes Methanocella conradii HZ254   1 1
No Yes Methanocella paludicola SANAE   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 2 2
No Yes Cryptococcus neoformans var. grubii H99   2 2
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Aspergillus fumigatus A1163   2 2
No Yes Saccharomyces cerevisiae FL100   1 1
No Yes Saccharomyces cerevisiae VL3   1 1
No Yes Saccharomyces cerevisiae Vin13   1 1
No Yes Saccharomyces cerevisiae Sigma1278b   3 3
No Yes Saccharomyces cerevisiae RM11-1a   2 2
No Yes Saccharomyces cerevisiae RM11-1a   1 1
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 3 3
No Yes Schizosaccharomyces pombe 972h-   1 1
No Yes Neospora caninum Nc-Liverpool 6.2   3 3
No Yes Plasmodium falciparum HB3   3 3
No Yes Plasmodium falciparum Dd2   2 2
No Yes Dactylococcopsis salina PCC 8305   2 1
No Yes Calothrix parietina Calothrix sp. PCC 6303   2 1
No Yes Anabaena cylindrica PCC 7122   1 1
No Yes Streptomyces albus J1074   3 3
No Yes Streptomyces rapamycinicus NRRL 5491   4 4
No Yes Streptomyces davawensis JCM 4913   6 6
No Yes Streptomyces fulvissimus DSM 40593   4 4
No Yes Streptomyces collinus Tu 365   2 2
No Yes Amycolatopsis mediterranei RB   2 1
No Yes Amycolatopsis mediterranei S699   2 1
No Yes Amycolatopsis mediterranei S699   2 1
No Yes Amycolatopsis orientalis HCCB10007   4 3
No Yes Propionibacterium acidipropionici ATCC 4875   1 1
No Yes Actinoplanes friuliensis DSM 7358   3 3
No Yes Nocardia brasiliensis ATCC 700358   2 1
No Yes Clavibacter michiganensis subsp. sepedonicus   2 2
No Yes Clavibacter michiganensis subsp. nebraskensis NCPPB 2581   2 1
No Yes Deinococcus peraridilitoris DSM 19664   2 2
No Yes Clostridium thermocellum DSM 1313   2 1
No Yes Clostridium difficile BI1   1 1
No Yes Clostridium difficile R20291   1 1
No Yes Clostridium difficile CD196   1 1
No Yes Clostridium perfringens SM101   1 1
No Yes Clostridium botulinum BKT015925   1 1
No Yes Paenibacillus larvae subsp. larvae DSM 25430   3 3
No Yes Paenibacillus polymyxa CR1   1 1
No Yes Paenibacillus polymyxa SC2   1 1
No Yes Paenibacillus polymyxa E681   1 1
No Yes Bacillus toyonensis BCT-7112   1 1
No Yes Bacillus thuringiensis MC28   1 1
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   2 2
No Yes Bacillus cereus biovar anthracis str. CI   2 2
No Yes Bacillus cereus G9842   1 1
No Yes Bacillus anthracis str. H9401   2 2
No Yes Bacillus anthracis str. CDC 684   2 2
No Yes Bacillus anthracis str. 'Ames Ancestor'   2 2
No Yes Bacillus anthracis str. A2012   2 2
No Yes Rhodothermus marinus SG0.5JP17-172   1 1
No Yes Echinicola vietnamensis DSM 17526   4 4
No Yes Emticicia oligotrophica DSM 17448   2 2
No Yes Prevotella sp. oral taxon 299 str. F0039   1 1
No Yes Bacteroides xylanisolvens XB1A   1 1
No Yes Bacteroides fragilis 638R   4 4
No Yes Bacteroides fragilis NCTC 9343   2 2
No Yes Riemerella anatipestifer RA-CH-2   1 1
No Yes Riemerella anatipestifer RA-CH-1   1 1
No Yes Riemerella anatipestifer RA-GD   1 1
No Yes Riemerella anatipestifer ATCC 11845 = DSM 15868   1 1
No Yes Singulisphaera acidiphila DSM 18658   4 4
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Sorangium cellulosum So0157-2   2 2
No Yes Burkholderia lata   1 1
No Yes Burkholderia cenocepacia J2315   1 1
No Yes Caulobacter crescentus CB15   1 1
No Yes Phaeobacter gallaeciensis DSM 26640   2 1
No Yes Rhizobium etli CFN 42   1 1
No Yes Rhizobium etli bv. mimosae str. Mim1   1 1
No Yes Rhizobium tropici CIAT 899   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   1 1
No Yes Simiduia agarivorans SA1 = DSM 21679   2 1
No Yes Glaciecola psychrophila 170   1 1
No Yes Stenotrophomonas maltophilia D457   1 1
No Yes Xylella fastidiosa M12   1 1
No Yes Xylella fastidiosa Temecula1   1 1
No Yes Xylella fastidiosa 9a5c   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   3 3
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   3 3
No Yes Xanthomonas axonopodis pv. citrumelo F1   3 3
No Yes Xanthomonas axonopodis Xac29-1   3 3
No Yes Xanthomonas oryzae pv. oryzicola BLS256   3 3
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   3 3
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   3 3
No Yes Xanthomonas campestris pv. raphani 756C   3 3
No Yes Xanthomonas campestris pv. campestris str. 8004   3 3
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   3 3
No Yes Pseudomonas syringae pv. syringae B728a   1 1
No Yes Pseudomonas poae RE*1-1-14   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 3 3
No Yes Homo sapiens (NCBI version) Human 3 3
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 2 2
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Homo sapiens 69_37 Human 2 2
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 2 2
No Yes Gorilla gorilla 69_3.1 Western gorilla 2 2
No Yes Pongo abelii 69_2 Sumatran orangutan 1 1
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 2 2
No Yes Macaca mulatta 69_1 Rhesus monkey 1 1
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 2 2
No Yes Otolemur garnettii 69_3 Small-eared galago 2 2
No Yes Microcebus murinus 69_1 Gray mouse lemur 2 2
No Yes Rattus norvegicus 69_3.4 Norway rat 2 2
No Yes Mus musculus 69_38 House mouse 2 2
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 1 1
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 2 2
No Yes Cavia porcellus 69_3 Domestic guinea pig 1 1
No Yes Oryctolagus cuniculus 69_2 Rabbit 1 1
No Yes Sus scrofa 69_10.2 Pig 2 2
No Yes Bos taurus 69_3.1 Cattle 2 2
No Yes Vicugna pacos 69_1 Alpaca 1 1
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 2 2
No Yes Mustela putorius furo 69_1.0 Domestic ferret 2 2
No Yes Ailuropoda melanoleuca 69_1 Giant panda 2 2
No Yes Canis familiaris 69_3.1 Dog 2 2
No Yes Felis catus 69 Domestic cat 1 1
No Yes Equus caballus 69_2 Horse 2 2
No Yes Myotis lucifugus 69_2.0 Little brown bat 2 2
No Yes Pteropus vampyrus 69_1 Large flying fox 2 2
No Yes Sorex araneus 69_1 European shrew 1 1
No Yes Erinaceus europaeus 69 Western European hedgehog 2 2
No Yes Procavia capensis 69_1 Cape rock hyrax 2 2
No Yes Loxodonta africana 69_3 African savanna elephant 2 2
No Yes Echinops telfairi 69 Small Madagascar hedgehog 2 2
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 1 1
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 1 1
No Yes Macropus eugenii 69_1.0 Tammar wallaby 1 1
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 2 2
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 2 2
No Yes Ornithorhynchus anatinus 69_5 Platypus 1 1
No Yes Petromyzon marinus 69_7.0 Sea lamprey 1 1
No Yes Meleagris gallopavo 69_2 Turkey 1 1
No Yes Gallus gallus 69_2 Chicken 1 1
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 1 1
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 2 2
No Yes Latimeria chalumnae 69_1 Coelacanth 1 1
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 69_4 Torafugu 1 1
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 1 1
No Yes Oryzias latipes 69_1 Japanese medaka 1 1
No Yes Danio rerio 69_9 Zebrafish 3 3
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 2 2
No Yes 1_Upper_euphotic (meta-genome)   1 1
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   19 14
No Yes 4_Deep_abyss (meta-genome)   1 1
No Yes 5_050719P (meta-genome)   16 13
No Yes 7_Oxygen_minimum_layer (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   3 3
No Yes Bath Hot Springs, filamentous community (meta-genome)   1 1
No Yes Bath Hot Springs, planktonic community (meta-genome)   2 1
No Yes Combined (meta-genome)   4 4
No Yes Crater Hills (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   6 6
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   6 6
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   21 21
No Yes Dump top (Dump top) (meta-genome)   5 5
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   3 3
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   17 14
No Yes Fungus garden combined (combined) (meta-genome)   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   3 3
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   7 7
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   5 4
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   7 5
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   4 4
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   8 6
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   16 12
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   7 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   17 13
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   16 14
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   7 7
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   2 2
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   4 4
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   5 5
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   6 6
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   55 53
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   18 17
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   12 12
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   16 15
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   8 8
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   21 21
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   13 13
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   1 1
No Yes Mouse Gut Community lean1 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   14366 13446
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   24 24
No Yes Protozoadb 2010_08 (Protozoadb)   51 51
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   3 3
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   3 3
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   4 3
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   3 2
No Yes Sludge/US, Jazz Assembly (meta-genome)   1 1
No Yes Sludge/US, Phrap Assembly (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   35 33
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   44 44
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   44 44
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   19 19
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   28 28
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   18 18
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   24 24
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   4 4
No Yes STRING v9.0.5 (STRING)   358 313
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   2 2
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   19 19
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   16 15
No Yes Termite Protist Endosymbiont Community (meta-genome)   2 2
No Yes Uniprot 2018_03 genome   10489 9419
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   11 9
No Yes Global Ocean Sampling Expedition (GOS)   362 359
No Yes NCBI plasmid sequences (Plasmids)   45 43
No Yes NCBI viral sequences (Viral)   3 3
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   118 118
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   549 549
No Yes TargetDB (Targets)   33 33
No Yes UniProt viral sequences (Viral)   2 2

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]