SUPERFAMILY 1.75 HMM library and genome assignments server

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Growth factor receptor domain superfamily domain assignments
in
Vibrio vulnificus YJ016


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Select to display   Genome       Domains   Proteins
No Yes ALL   344964 344964
No Yes Homo sapiens 76_38 Human 736 406
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 116
No Yes Gorilla gorilla 76_3.1 Western gorilla 331 175
No Yes Pongo abelii 76_2 Sumatran orangutan 217 112
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 219 113
No Yes Papio anubis 76 Olive baboon 254 145
No Yes Macaca mulatta 76_1 Rhesus monkey 342 178
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 456 275
No Yes Otolemur garnettii 76_3 Small-eared galago 232 124
No Yes Microcebus murinus 76_1 Gray mouse lemur 154 90
No Yes Rattus norvegicus 76_5.0 Norway rat 236 144
No Yes Mus musculus 76_38 House mouse 411 220
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 162 91
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 222 117
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 198 100
No Yes Cavia porcellus 76_3 Domestic guinea pig 196 104
No Yes Oryctolagus cuniculus 76_2 Rabbit 219 109
No Yes Ochotona princeps 76 American pika 169 92
No Yes Tupaia belangeri 76 Northern tree shrew 116 76
No Yes Sus scrofa 76_10.2 Pig 230 126
No Yes Bos taurus 76_3.1 Cattle 240 119
No Yes Ovis aries 76_3.1 Sheep 242 123
No Yes Vicugna pacos 76_1 Alpaca 100 55
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 197 107
No Yes Mustela putorius furo 76_1.0 Domestic ferret 256 126
No Yes Ailuropoda melanoleuca 76_1 Giant panda 260 133
No Yes Canis familiaris 76_3.1 Dog 344 164
No Yes Felis catus 76_6.2 Domestic cat 217 120
No Yes Equus caballus 76_2 Horse 346 154
No Yes Myotis lucifugus 76_2.0 Little brown bat 186 110
No Yes Pteropus vampyrus 76_1 Large flying fox 205 105
No Yes Sorex araneus 76_1 European shrew 99 59
No Yes Erinaceus europaeus 76 Western European hedgehog 123 72
No Yes Procavia capensis 76_1 Cape rock hyrax 162 94
No Yes Loxodonta africana 76_3 African savanna elephant 283 146
No Yes Echinops telfairi 76 Small Madagascar hedgehog 142 85
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 222 131
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 83 40
No Yes Macropus eugenii 76_1.0 Tammar wallaby 155 92
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 208 123
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 237 126
No Yes Ornithorhynchus anatinus 76_5 Platypus 178 109
No Yes Saccoglossus kowalevskii v3.0   846 213
No Yes Petromyzon marinus 76_7.0 Sea lamprey 105 61
No Yes Meleagris gallopavo 76_2 Turkey 187 109
No Yes Gallus gallus 76_4 Chicken 209 112
No Yes Anas platyrhynchos 76_1.0 Mallard 173 87
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 187 102
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 217 115
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 207 119
No Yes Anolis carolinensis 76_2.0 Green anole 231 121
No Yes Xenopus laevis African clawed frog 285 201
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 269 158
No Yes Latimeria chalumnae 76_1 Coelacanth 310 166
No Yes Lepisosteus oculatus 76 Spotted gar 377 184
No Yes Gadus morhua 76_1 Atlantic cod 269 156
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 401 182
No Yes Takifugu rubripes 76_4 Torafugu 1082 620
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 316 186
No Yes Oryzias latipes 76_1 Japanese medaka 328 195
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 285 159
No Yes Poecilia formosa 76 Amazon molly 306 161
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 357 209
No Yes Astyanax mexicanus 76 Mexican tetra 284 174
No Yes Danio rerio 76_9 Zebrafish 479 256
No Yes Oikopleura dioica   254 92
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 820 276
No Yes Ciona intestinalis 76 Vase tunicate 203 93
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 785 270
No Yes Adineta vaga   119 73
No Yes Octopus bimaculoides 280   179 106
No Yes Crassostrea gigas 22 Pacific oyster 461 216
No Yes Lottia gigantea Owl limpet 168 101
No Yes Helobdella robusta   167 88
No Yes Capitella sp. I   333 186
No Yes Danaus plexippus OGS1.0 Monarch butterfly 72 33
No Yes Heliconius melpomene Postman butterfly 64 28
No Yes Bombyx mori Domestic silkworm 60 36
No Yes Nasonia vitripennis Jewel wasp 49 19
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 303 137
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 79 28
No Yes Linepithema humile v1.1 Argentine ant 47 28
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 49 26
No Yes Solenopsis invicta v.2.2.3 Red fire ant 31 25
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 82 31
No Yes Atta cephalotes v1.1   42 29
No Yes Camponotus floridanus v3.3 Florida carpenter ant 82 31
No Yes Lucilia cuprina Australian sheep blowfly 66 34
No Yes Drosophila grimshawi 1.3   64 35
No Yes Drosophila willistoni 1.3   55 35
No Yes Drosophila pseudoobscura 2.13   66 36
No Yes Drosophila persimilis 1.3   57 36
No Yes Drosophila suzukii   60 33
No Yes Drosophila yakuba 1.3   64 37
No Yes Drosophila simulans 1.3   45 31
No Yes Drosophila sechellia 1.3   60 34
No Yes Drosophila melanogaster 76_5 Fruit fly 288 126
No Yes Drosophila erecta 1.3   61 34
No Yes Drosophila ananassae 1.3   56 34
No Yes Drosophila virilis 1.2   62 35
No Yes Drosophila mojavensis 1.3   60 35
No Yes Megaselia scalaris 22   16 14
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 79 43
No Yes Culex pipiens quinquefasciatus Southern house mosquito 65 36
No Yes Anopheles darlingi 22 American malaria mosquito 49 27
No Yes Anopheles gambiae 49_3j African malaria mosquito 77 37
No Yes Tribolium castaneum 3.0 Red flour beetle 82 31
No Yes Pediculus humanus corporis (Early assembly) Human body louse 75 33
No Yes Acyrthosiphon pisum Pea aphid 45 19
No Yes Rhodnius prolixus 22   66 30
No Yes Daphnia pulex Common water flea 94 48
No Yes Strigamia maritima 22   81 42
No Yes Sarcoptes scabiei   44 28
No Yes Tetranychus urticae Two-spotted spider mite 52 32
No Yes Ixodes scapularis (Preliminary) Black-legged tick 58 32
No Yes Pristionchus pacificus   66 37
No Yes Meloidogyne incognita Southern root-knot nematode 29 17
No Yes Meloidogyne hapla   14 8
No Yes Onchocerca volvulus 22   48 24
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 72 44
No Yes Caenorhabditis japonica   44 29
No Yes Caenorhabditis brenneri   55 38
No Yes Caenorhabditis remanei   53 33
No Yes Caenorhabditis elegans 76_235 Roundworm 120 56
No Yes Caenorhabditis briggsae 2   41 27
No Yes Trichinella spiralis 22   48 32
No Yes Hymenolepis microstoma   55 28
No Yes Echinococcus multilocularis   37 17
No Yes Echinococcus granulosus   38 18
No Yes Taenia solium Pork tapeworm 34 19
No Yes Schistosoma mansoni   42 24
No Yes Mnemiopsis leidyi Sea walnut 232 121
No Yes Thelohanellus kitauei   3 3
No Yes Acropora digitifera v1.0   336 164
No Yes Nematostella vectensis 1.0 Starlet sea anemone 318 190
No Yes Hydra vulgaris   194 76
No Yes Amphimedon queenslandica   284 130
No Yes Trichoplax adhaerens   239 82
No Yes Proterospongia sp. ATCC 50818   182 81
No Yes Monosiga brevicollis   108 63
No Yes Sphaeroforma arctica JP610   21 18
No Yes Capsaspora owczarzaki ATCC 30864   177 137
No Yes Conidiobolus coronatus NRRL28638 v1.0   4 4
No Yes Mortierella verticillata NRRL 6337   2 2
No Yes Rhizomucor miehei CAU432   2 2
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   3 1
No Yes Rhodotorula graminis WP1 v1.0   6 4
No Yes Sporobolomyces roseus IAM 13481   1 1
No Yes Microbotryum violaceum 22   17 14
No Yes Sphaerobolus stellatus v1.0   3 1
No Yes Piloderma croceum F 1598 v1.0   3 1
No Yes Coniophora puteana   3 1
No Yes Hydnomerulius pinastri v2.0   3 1
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   4 2
No Yes Pisolithus microcarpus 441 v1.0   3 1
No Yes Pisolithus tinctorius Marx 270 v1.0   3 1
No Yes Scleroderma citrinum Foug A v1.0   3 1
No Yes Coprinopsis cinerea okayama7 130 v3   9 5
No Yes Pleurotus ostreatus Oyster mushroom 9 5
No Yes Amanita thiersii Skay4041 v1.0   6 2
No Yes Amanita muscaria Koide v1.0 Fly agaric 5 2
No Yes Galerina marginata v1.0   7 2
No Yes Hebeloma cylindrosporum h7 v2.0   7 3
No Yes Laccaria bicolor S238N-H82   7 3
No Yes Agaricus bisporus var. bisporus   6 2
No Yes Schizophyllum commune   3 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   3 1
No Yes Heterobasidion annosum   3 1
No Yes Gloeophyllum trabeumv1.0   4 2
No Yes Punctularia strigosozonata v1.0   10 8
No Yes Sebacina vermifera MAFF 305830 v1.0   4 3
No Yes Fomitiporia mediterranea v1.0   3 1
No Yes Tulasnella calospora AL13/4D v1.0   11 9
No Yes Wolfiporia cocos MD-104 SS10 v1.0   3 1
No Yes Fomitopsis pinicolav1.0   3 1
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   3 1
No Yes Phanerochaete chrysosporium RP-78 2.1   6 2
No Yes Dichomitus squalens   3 1
No Yes Trametes versicolor v1.0   6 3
No Yes Tremella mesenterica Witches' butter 3 1
No Yes Apiospora montagnei NRRL 25634 v1.0   3 3
No Yes Sporotrichum thermophile ATCC 42464   1 1
No Yes Chaetomium globosum CBS 148.51   2 2
No Yes Fusarium graminearum   2 1
No Yes Nectria haematococca mpVI   2 2
No Yes Fusarium oxysporum f. sp. lycopersici 4286   4 3
No Yes Fusarium verticillioides 7600   5 4
No Yes Trichoderma harzianum CBS 226.95 v1.0   1 1
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   1 1
No Yes Cochliobolus victoriae FI3 v1.0   1 1
No Yes Cochliobolus carbonum 26-R-13 v1.0   1 1
No Yes Aspergillus fumigatus Af293   3 1
No Yes Neosartorya fischeri NRRL 181   3 1
No Yes Aspergillus wentii v1.0   1 1
No Yes Aspergillus oryzae RIB40   1 1
No Yes Candida albicans SC5314   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   5 5
No Yes Spizellomyces punctatus DAOM BR117   5 5
No Yes Dictyostelium discoideum   20 8
No Yes Dictyostelium purpureum   17 11
No Yes Entamoeba dispar 1.2   353 129
No Yes Entamoeba invadens 1.2   2670 727
No Yes Entamoeba histolytica 1   286 93
No Yes Selaginella moellendorffii   1 1
No Yes Pinus taeda Loblolly pine 1 1
No Yes Eucalyptus grandis v201 Rose gum 13 13
No Yes Theobroma cacao B97-61/B2 v1 Cacao 1 1
No Yes Gossypium raimondii v221   3 3
No Yes Citrus sinensis v154 Sweet orange 6 6
No Yes Glycine max v109 Soybean 2 2
No Yes Fragaria vesca Wild strawberry 1 1
No Yes Malus domestica v196 Apple 4 4
No Yes Prunus persica v139 Peach 3 3
No Yes Linum usitatissimum v200 Flax 4 4
No Yes Populus trichocarpa v156 Black cottonwood 9 9
No Yes Vitis vinifera Wine grape 2 2
No Yes Solanum lycopersicum v.2.3 Tomato 2 2
No Yes Solanum tuberosum Potato 5 5
No Yes Aquilegia coerulea v195   10 10
No Yes Triticum urartu 22   20 20
No Yes Triticum aestivum 22 Bread wheat 53 53
No Yes Aegilops tauschii 22   25 25
No Yes Brachypodium distachyon Stiff brome 22 22
No Yes Oryza barthii 22 African wild rice 22 21
No Yes Oryza meridionalis 22   24 24
No Yes Oryza glumaepatula 22   41 41
No Yes Oryza glaberrima African rice 8 8
No Yes Oryza punctata 22   26 26
No Yes Oryza nivara 22   42 35
No Yes Oryza brachyantha 22 Malo sina 14 14
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 23 23
No Yes Oryza sativa v193 Rice 25 25
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 9 9
No Yes Panicum virgatum v202 Switchgrass 37 37
No Yes Setaria italica v164 Foxtail millet 22 22
No Yes Zea mays subsp. mays Maize 10 10
No Yes Zea mays v181 Maize 9 9
No Yes Sorghum bicolor Sorghum 14 14
No Yes Musa balbisiana Balbis banana 6 5
No Yes Musa acuminata 22 Wild Malaysian banana 10 10
No Yes Coccomyxa subellipsoidea sp. C-169 v2   5 5
No Yes Asterochloris sp. Cgr/DA1pho v1.0   1 1
No Yes Chlorella variabilis sp. NC64A   115 65
No Yes Chlorella vulgaris   5 5
No Yes Volvox carteri f. nagariensis   8 5
No Yes Volvox carteri v199   9 6
No Yes Chlamydomonas reinhardtii 4.0   22 13
No Yes Ostreococcus sp. RCC809   11 8
No Yes Ostreococcus lucimarinus CCE9901   11 8
No Yes Ostreococcus tauri   8 6
No Yes Bathycoccus prasinos   6 6
No Yes Micromonas sp. RCC299   23 16
No Yes Micromonas pusilla CCMP1545 v3.0   18 9
No Yes Cyanidioschyzon merolae strain 10D 22   5 1
No Yes Cyanidioschyzon merolae   5 1
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Thecamonas trahens ATCC 50062   92 85
No Yes Bigelowiella natans CCMP2755 22   42 16
No Yes Giardia lamblia 2.3   618 228
No Yes Cyanophora paradoxa   180 104
No Yes Leishmania mexicana 2.4   11 7
No Yes Leishmania major strain Friedlin   15 12
No Yes Leishmania infantum JPCM5 2.4   12 9
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   18 13
No Yes Trypanosoma cruzi strain CL Brener   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Ectocarpus siliculosus   26 7
No Yes Aureococcus anophagefferens   86 52
No Yes Albugo laibachii 22   18 7
No Yes Pythium iwayamai DAOM BR242034 22   25 7
No Yes Pythium arrhenomanes ATCC 12531 22   12 8
No Yes Pythium ultimum v1.7-2   25 12
No Yes Pythium aphanidermatum DAOM BR444 22   10 8
No Yes Pythium irregulare DAOM BR486 22   12 9
No Yes Pythium vexans DAOM BR484 22   25 11
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 12 5
No Yes Phytophthora sojae 1.1   17 6
No Yes Phytophthora infestans T30-4   24 11
No Yes Phytophthora capsici   4 4
No Yes Hyaloperonospora arabidopsidis 22   5 3
No Yes Phaeodactylum tricornutumCCAP 1055/1   1 1
No Yes Thalassiosira pseudonana CCMP1335   2 1
No Yes Perkinsus marinus ATCC 50983   9 6
No Yes Paramecium tetraurelia   1622 428
No Yes Tetrahymena thermophila SB210 1   2980 799
No Yes Ichthyophthirius multifiliis strain G5   398 137
No Yes Cryptosporidium hominis   11 8
No Yes Cryptosporidium muris   17 9
No Yes Cryptosporidium parvum Iowa II   11 8
No Yes Neospora caninum   70 24
No Yes Toxoplasma gondii VEG   51 22
No Yes Toxoplasma gondii ME49   50 22
No Yes Toxoplasma gondii GT1   43 23
No Yes Babesia bovis T2Bo   16 8
No Yes Theileria parva   8 6
No Yes Theileria annulata   7 4
No Yes Plasmodium falciparum 3D7   6 4
No Yes Plasmodium vivax SaI-1 7.0   11 6
No Yes Plasmodium knowlesi strain H   7 4
No Yes Plasmodium yoelii ssp. yoelii 1   6 4
No Yes Plasmodium chabaudi   8 5
No Yes Plasmodium berghei ANKA   8 5
No Yes Symbiodinium minutum clade B1 v1.2   278 181
No Yes Naegleria gruberi   36 29
No Yes Trichomonas vaginalis   58 37
No Yes Guillardia theta CCMP2712 v1.0   409 172
No Yes Emiliania huxleyi CCMP1516   15 12
No Yes Synechococcus elongatus PCC 7942   1 1
No Yes Ilumatobacter coccineus   3 1
No Yes Filifactor alocis ATCC 35896   1 1
No Yes Runella slithyformis DSM 19594   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Desulfurispirillum indicum S5   1 1
No Yes Denitrovibrio acetiphilus DSM 12809   1 1
No Yes Desulfomonile tiedjei DSM 6799   1 1
No Yes Haliangium ochraceum DSM 14365   4 4
No Yes Sorangium cellulosum 'So ce 56'   2 2
No Yes Corallococcus coralloides DSM 2259   1 1
No Yes Myxococcus xanthus DK 1622   2 2
No Yes Myxococcus fulvus HW-1   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Hirschia baltica ATCC 49814   1 1
No Yes Hyphomonas neptunium ATCC 15444   1 1
No Yes Dinoroseobacter shibae DFL 12   1 1
No Yes Phaeobacter gallaeciensis 2.10   1 1
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   1 1
No Yes Hahella chejuensis KCTC 2396   1 1
No Yes Allochromatium vinosum DSM 180   1 1
No Yes gamma proteobacterium HdN1   1 1
No Yes Nitrosopumilus maritimus SCM1   1 1
No Yes Methanospirillum hungatei JF-1   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 318 205
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 152 94
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 80 45
No Yes Ascaris suum Victoria/Ghent Pig roundworm 66 36
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 66 43
No Yes Cryptococcus neoformans var. grubii H99   3 1
No Yes Cryptococcus neoformans B-3501A   2 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Coccidioides posadasii str. Silveira   1 1
No Yes Aspergillus fumigatus A1163   1 1
No Yes Candida albicans WO-1   1 1
No Yes Batrachochytrium dendrobatidis JEL423   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 1 1
No Yes Hordeum vulgare 22 Domesticated barley 19 19
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 26 26
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Neospora caninum Nc-Liverpool 6.2   70 24
No Yes Plasmodium falciparum HB3   4 3
No Yes Plasmodium falciparum Dd2   4 3
No Yes Synechococcus elongatus PCC 6301   1 1
No Yes Nocardia brasiliensis ATCC 700358   1 1
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Phaeobacter gallaeciensis DSM 17395   1 1
No Yes Simiduia agarivorans SA1 = DSM 21679   1 1
No Yes Shewanella sp. ANA-3   1 1
No Yes Shewanella baltica OS117   1 1
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   1 1
No Yes Methanoregula formicica Methanoregula formicicum SMSP   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 767 418
No Yes Homo sapiens (NCBI version) Human 381 199
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 224 124
No Yes Heliconius numata (Incomplete)   12 11
No Yes Loa loa v3.3 (Request) Eye worm 48 27
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 43 32
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 36 21
No Yes Lotus japonicus (Early assembly)   3 3
No Yes Malus x domestica (Duplicate) Apple 4 4
No Yes Ricinus communis (Early assembly) Castor bean 4 4
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   2 2
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 2 2
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 2 2
No Yes Phoenix dactylifera (Early draft) Date palm 1 1
No Yes Homo sapiens 69_37 Human 274 135
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 213 113
No Yes Gorilla gorilla 69_3.1 Western gorilla 216 118
No Yes Pongo abelii 69_2 Sumatran orangutan 208 108
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 209 109
No Yes Macaca mulatta 69_1 Rhesus monkey 223 109
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 215 121
No Yes Otolemur garnettii 69_3 Small-eared galago 232 124
No Yes Microcebus murinus 69_1 Gray mouse lemur 154 90
No Yes Rattus norvegicus 69_3.4 Norway rat 212 118
No Yes Mus musculus 69_38 House mouse 225 123
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 162 91
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 221 116
No Yes Cavia porcellus 69_3 Domestic guinea pig 191 100
No Yes Oryctolagus cuniculus 69_2 Rabbit 195 98
No Yes Ochotona princeps 69 American pika 169 92
No Yes Tupaia belangeri 69 Northern tree shrew 116 76
No Yes Sus scrofa 69_10.2 Pig 189 107
No Yes Bos taurus 69_3.1 Cattle 227 115
No Yes Vicugna pacos 69_1 Alpaca 100 55
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 195 105
No Yes Mustela putorius furo 69_1.0 Domestic ferret 245 124
No Yes Ailuropoda melanoleuca 69_1 Giant panda 228 118
No Yes Canis familiaris 69_3.1 Dog 228 118
No Yes Felis catus 69 Domestic cat 140 76
No Yes Equus caballus 69_2 Horse 211 114
No Yes Myotis lucifugus 69_2.0 Little brown bat 180 104
No Yes Pteropus vampyrus 69_1 Large flying fox 205 105
No Yes Sorex araneus 69_1 European shrew 99 59
No Yes Erinaceus europaeus 69 Western European hedgehog 123 72
No Yes Procavia capensis 69_1 Cape rock hyrax 161 93
No Yes Loxodonta africana 69_3 African savanna elephant 215 115
No Yes Echinops telfairi 69 Small Madagascar hedgehog 142 85
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 110 69
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 83 40
No Yes Macropus eugenii 69_1.0 Tammar wallaby 155 92
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 168 103
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 225 120
No Yes Ornithorhynchus anatinus 69_5 Platypus 167 100
No Yes Petromyzon marinus 69_7.0 Sea lamprey 100 57
No Yes Meleagris gallopavo 69_2 Turkey 165 94
No Yes Gallus gallus 69_2 Chicken 183 91
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 185 100
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 174 99
No Yes Anolis carolinensis 69_2.0 Green anole 201 105
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 228 134
No Yes Latimeria chalumnae 69_1 Coelacanth 253 135
No Yes Gadus morhua 69_1 Atlantic cod 236 135
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 260 134
No Yes Takifugu rubripes 69_4 Torafugu 251 136
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 260 142
No Yes Oryzias latipes 69_1 Japanese medaka 252 143
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 283 157
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 273 156
No Yes Danio rerio 69_9 Zebrafish 330 175
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 243 76
No Yes Ciona intestinalis 69 Vase tunicate 180 83
No Yes Drosophila melanogaster 69_5 Fruit fly 65 35
No Yes Caenorhabditis elegans 69_215 Roundworm 44 30
No Yes 2_Base_of_chrolophyll_max (meta-genome)   1 1
No Yes 3_Below_base_of_euphotic (meta-genome)   6 5
No Yes 4_Deep_abyss (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   2 2
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   3 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   2 2
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   2 2
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   2 2
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   2 2
No Yes NCBI 2017_08 genome   135415 65222
No Yes Protozoadb 2010_08 (Protozoadb)   2937 1215
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   9 9
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   7 7
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   4 3
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   3 3
No Yes STRING v9.0.5 (STRING)   13097 6054
No Yes Uniprot 2018_03 genome   103232 50551
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   1 1
No Yes Global Ocean Sampling Expedition (GOS)   383 304
No Yes NCBI plasmid sequences (Plasmids)   4 4
No Yes NCBI viral sequences (Viral)   7 6
No Yes PDB chains (SCOP 1.75) (PDB)   28 21
No Yes Protein Data Bank (all PDB sequenc)   316 238
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   330 330
No Yes TargetDB (Targets)   328 153
No Yes UniProt viral sequences (Viral)   14 13

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