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Hairpin loop containing domain-like superfamily domain assignments
in
Brachypodium distachyon

Assignment details

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Brachypodium distachyon has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
EG:BRADI2G46097.1   0.0000157   333-382   Anti-platelet protein  
EG:BRADI3G44717.1   0.0000628   380-416   Pan module (APPLE domain)  
EG:BRADI4G26460.1   0.0000667   373-414   Anti-platelet protein  
EG:BRADI4G41920.1   0.0000471   394-436   Hairpin loop containing domain  
 
Weak hits:
EG:BRADI1G05890.1   0.00687   405-444   Pan module (APPLE domain)  
EG:BRADI1G06280.1   0.00961   370-407   Pan module (APPLE domain)  
EG:BRADI1G14060.1   0.00302   454-515   Pan module (APPLE domain)  
EG:BRADI1G25090.1   0.000647   351-401   Pan module (APPLE domain)  
EG:BRADI1G25180.1   0.00306   359-419   Hairpin loop containing domain  
EG:BRADI1G25187.1   0.0157   389-439   Anti-platelet protein  
EG:BRADI1G33620.1   0.0155   378-408   Pan module (APPLE domain)  
EG:BRADI1G33640.1   0.00785   407-468   Pan module (APPLE domain)  
EG:BRADI1G33650.1   0.000255   354-414   Pan module (APPLE domain)  
EG:BRADI1G35310.1   0.0192   370-402   Pan module (APPLE domain)  
EG:BRADI1G36720.1   0.00184   345-376   Pan module (APPLE domain)  
EG:BRADI1G42377.1   0.0231   374-409   Pan module (APPLE domain)  
EG:BRADI1G48380.1   0.00824   374-421   Hairpin loop containing domain  
EG:BRADI1G69600.1   0.00392   385-428   Pan module (APPLE domain)  
EG:BRADI1G75950.1   0.0049   407-455   Pan module (APPLE domain)  
EG:BRADI2G07337.1   0.0314   352-384   Pan module (APPLE domain)  
EG:BRADI2G10692.1   0.00049   381-421   Pan module (APPLE domain)  
EG:BRADI2G13460.1   0.002   212-272   Pan module (APPLE domain)  
EG:BRADI2G25280.1   0.000883   390-433   Pan module (APPLE domain)  
EG:BRADI2G28137.1   0.0157   368-402   Anti-platelet protein  
EG:BRADI2G34620.1   0.000569   327-383   Pan module (APPLE domain)  
EG:BRADI2G34630.1   0.000114   332-380   Hairpin loop containing domain  
EG:BRADI2G46140.1   0.00196   335-385   Pan module (APPLE domain)  
EG:BRADI2G51842.1   0.00106   352-411   Pan module (APPLE domain)  
EG:BRADI2G51940.1   0.00314   350-411   Anti-platelet protein  
EG:BRADI2G51940.2   0.00471   350-411   Anti-platelet protein  
EG:BRADI2G51947.1   0.000349   351-413   Hairpin loop containing domain  
EG:BRADI3G09005.1   0.0628   392-432   Pan module (APPLE domain)  
EG:BRADI3G09977.1   0.00228   347-387   Anti-platelet protein  
EG:BRADI3G15457.1   0.0145   216-247   Anti-platelet protein  
EG:BRADI3G15480.1   0.000341   334-389   Hairpin loop containing domain  
EG:BRADI3G21580.1   0.0451   375-411   Pan module (APPLE domain)  
EG:BRADI3G27197.1   0.00275   351-397   Pan module (APPLE domain)  
EG:BRADI3G41060.1   0.00981   467-510   Pan module (APPLE domain)  
EG:BRADI3G55987.1   0.000471   386-422   Hairpin loop containing domain  
EG:BRADI3G57900.1   0.0053   376-412   Pan module (APPLE domain)  
EG:BRADI4G00206.1   0.0051   402-431   Pan module (APPLE domain)  
EG:BRADI4G26450.1   0.00471   389-425   Anti-platelet protein  
EG:BRADI4G32027.1   0.0365   378-424   Pan module (APPLE domain)  
EG:BRADI4G37220.1   0.0118   369-414   Hairpin loop containing domain  
EG:BRADI4G43690.1   0.000118   341-388   Pan module (APPLE domain)  
EG:BRADI5G02980.1   0.0208   406-443   Anti-platelet protein  
EG:BRADI5G03127.1   0.000863   273-340   Pan module (APPLE domain)  
EG:BRADI5G09890.1   0.000373   260-299   Pan module (APPLE domain)  
EG:BRADI5G09900.1   0.00118   355-410   Pan module (APPLE domain)  
EG:BRADI5G09910.1   0.00314   365-407   Anti-platelet protein  
EG:BRADI5G22930.1   0.00432   343-379   Hairpin loop containing domain  
EG:BRADI5G22980.1   0.00263   349-386   Hairpin loop containing domain  
EG:BRADI5G23020.1   0.00785   338-382   Hairpin loop containing domain  
EG:BRADI5G23027.1   0.00231   347-409   Hairpin loop containing domain  
EG:BRADI5G23040.1   0.000667   352-394   Hairpin loop containing domain  
EG:BRADI5G23050.1   0.00981   352-389   Anti-platelet protein  
EG:BRADI5G23060.1   0.0137   342-385   Anti-platelet protein  
EG:BRADI5G23080.1   0.0942   368-411   Anti-platelet protein  
EG:BRADI5G23087.1   0.0286   352-394   Anti-platelet protein  
EG:BRADI5G23100.1   0.0667   369-428   Pan module (APPLE domain)  
EG:BRADI5G24480.1   0.000785   354-391   Pan module (APPLE domain)  

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Select to display   Genome       Domains   Proteins
No Yes ALL   27432 27432
No Yes Homo sapiens 76_38 Human 18 18
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 4 4
No Yes Gorilla gorilla 76_3.1 Western gorilla 4 4
No Yes Pongo abelii 76_2 Sumatran orangutan 4 4
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 4 4
No Yes Papio anubis 76 Olive baboon 3 3
No Yes Macaca mulatta 76_1 Rhesus monkey 5 5
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 7 7
No Yes Otolemur garnettii 76_3 Small-eared galago 4 4
No Yes Microcebus murinus 76_1 Gray mouse lemur 2 2
No Yes Rattus norvegicus 76_5.0 Norway rat 3 3
No Yes Mus musculus 76_38 House mouse 5 5
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 2 2
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 5 5
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 3 3
No Yes Cavia porcellus 76_3 Domestic guinea pig 4 4
No Yes Oryctolagus cuniculus 76_2 Rabbit 4 4
No Yes Ochotona princeps 76 American pika 3 3
No Yes Tupaia belangeri 76 Northern tree shrew 1 1
No Yes Sus scrofa 76_10.2 Pig 6 6
No Yes Bos taurus 76_3.1 Cattle 4 4
No Yes Ovis aries 76_3.1 Sheep 4 4
No Yes Vicugna pacos 76_1 Alpaca 2 2
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 3 3
No Yes Mustela putorius furo 76_1.0 Domestic ferret 4 4
No Yes Ailuropoda melanoleuca 76_1 Giant panda 5 5
No Yes Canis familiaris 76_3.1 Dog 4 4
No Yes Felis catus 76_6.2 Domestic cat 3 3
No Yes Equus caballus 76_2 Horse 3 3
No Yes Myotis lucifugus 76_2.0 Little brown bat 3 3
No Yes Pteropus vampyrus 76_1 Large flying fox 2 2
No Yes Sorex araneus 76_1 European shrew 3 3
No Yes Erinaceus europaeus 76 Western European hedgehog 2 2
No Yes Procavia capensis 76_1 Cape rock hyrax 3 3
No Yes Loxodonta africana 76_3 African savanna elephant 4 4
No Yes Echinops telfairi 76 Small Madagascar hedgehog 4 4
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 4 4
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 2 2
No Yes Macropus eugenii 76_1.0 Tammar wallaby 1 1
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 5 5
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 3 3
No Yes Ornithorhynchus anatinus 76_5 Platypus 5 5
No Yes Saccoglossus kowalevskii v3.0   40 29
No Yes Petromyzon marinus 76_7.0 Sea lamprey 1 1
No Yes Meleagris gallopavo 76_2 Turkey 5 5
No Yes Gallus gallus 76_4 Chicken 4 4
No Yes Anas platyrhynchos 76_1.0 Mallard 2 2
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 5 5
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 4 4
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 3 3
No Yes Anolis carolinensis 76_2.0 Green anole 4 4
No Yes Xenopus laevis African clawed frog 9 9
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 2 2
No Yes Latimeria chalumnae 76_1 Coelacanth 5 5
No Yes Lepisosteus oculatus 76 Spotted gar 5 5
No Yes Gadus morhua 76_1 Atlantic cod 4 4
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 10 8
No Yes Takifugu rubripes 76_4 Torafugu 21 21
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 10 8
No Yes Oryzias latipes 76_1 Japanese medaka 8 6
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 10 8
No Yes Poecilia formosa 76 Amazon molly 7 6
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 11 10
No Yes Astyanax mexicanus 76 Mexican tetra 4 4
No Yes Danio rerio 76_9 Zebrafish 6 6
No Yes Oikopleura dioica   6 5
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 2 2
No Yes Ciona intestinalis 76 Vase tunicate 3 3
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 48 41
No Yes Adineta vaga   29 29
No Yes Octopus bimaculoides 280   81 45
No Yes Crassostrea gigas 22 Pacific oyster 73 60
No Yes Lottia gigantea Owl limpet 48 39
No Yes Helobdella robusta   57 55
No Yes Capitella sp. I   98 69
No Yes Danaus plexippus OGS1.0 Monarch butterfly 10 5
No Yes Heliconius melpomene Postman butterfly 7 4
No Yes Bombyx mori Domestic silkworm 6 4
No Yes Nasonia vitripennis Jewel wasp 9 5
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 13 6
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 10 5
No Yes Linepithema humile v1.1 Argentine ant 13 7
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 9 7
No Yes Solenopsis invicta v.2.2.3 Red fire ant 11 7
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 10 6
No Yes Atta cephalotes v1.1   12 7
No Yes Camponotus floridanus v3.3 Florida carpenter ant 9 6
No Yes Lucilia cuprina Australian sheep blowfly 12 6
No Yes Drosophila grimshawi 1.3   17 8
No Yes Drosophila willistoni 1.3   17 8
No Yes Drosophila pseudoobscura 2.13   13 6
No Yes Drosophila persimilis 1.3   15 7
No Yes Drosophila suzukii   15 7
No Yes Drosophila yakuba 1.3   15 7
No Yes Drosophila simulans 1.3   13 6
No Yes Drosophila sechellia 1.3   15 7
No Yes Drosophila melanogaster 76_5 Fruit fly 38 14
No Yes Drosophila erecta 1.3   15 7
No Yes Drosophila ananassae 1.3   16 7
No Yes Drosophila virilis 1.2   16 8
No Yes Drosophila mojavensis 1.3   17 8
No Yes Megaselia scalaris 22   2 2
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 11 5
No Yes Culex pipiens quinquefasciatus Southern house mosquito 10 5
No Yes Anopheles darlingi 22 American malaria mosquito 9 4
No Yes Anopheles gambiae 49_3j African malaria mosquito 9 4
No Yes Tribolium castaneum 3.0 Red flour beetle 13 6
No Yes Pediculus humanus corporis (Early assembly) Human body louse 10 6
No Yes Acyrthosiphon pisum Pea aphid 10 6
No Yes Rhodnius prolixus 22   10 5
No Yes Daphnia pulex Common water flea 29 15
No Yes Strigamia maritima 22   27 11
No Yes Sarcoptes scabiei   22 7
No Yes Tetranychus urticae Two-spotted spider mite 96 73
No Yes Ixodes scapularis (Preliminary) Black-legged tick 22 14
No Yes Pristionchus pacificus   44 26
No Yes Meloidogyne incognita Southern root-knot nematode 37 19
No Yes Meloidogyne hapla   15 9
No Yes Onchocerca volvulus 22   35 14
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 36 15
No Yes Caenorhabditis japonica   41 19
No Yes Caenorhabditis brenneri   53 22
No Yes Caenorhabditis remanei   51 27
No Yes Caenorhabditis elegans 76_235 Roundworm 69 32
No Yes Caenorhabditis briggsae 2   44 20
No Yes Trichinella spiralis 22   45 29
No Yes Mnemiopsis leidyi Sea walnut 53 23
No Yes Acropora digitifera v1.0   63 62
No Yes Nematostella vectensis 1.0 Starlet sea anemone 85 81
No Yes Hydra vulgaris   6 6
No Yes Amphimedon queenslandica   1 1
No Yes Proterospongia sp. ATCC 50818   4 2
No Yes Monosiga brevicollis   2 2
No Yes Sphaeroforma arctica JP610   1 1
No Yes Daldinia eschscholzii EC12 v1.0   1 1
No Yes Apiospora montagnei NRRL 25634 v1.0   4 3
No Yes Magnaporthe poae ATCC 64411 22   2 2
No Yes Podospora anserina   1 1
No Yes Verticillium albo-atrum VaMs.102   1 1
No Yes Verticillium dahliae VdLs.17   1 1
No Yes Glomerella graminicola 22   1 1
No Yes Fusarium graminearum   6 5
No Yes Nectria haematococca mpVI   6 5
No Yes Fusarium oxysporum f. sp. lycopersici 4286   5 5
No Yes Fusarium verticillioides 7600   7 6
No Yes Trichoderma asperellum CBS 433.97 v1.0   3 3
No Yes Trichoderma reesei 1.2   1 1
No Yes Trichoderma virens Gv29-8   5 2
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   1 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   4 2
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Didymella exigua CBS 183.55 v1.0   1 1
No Yes Setosphaeria turcica v1.0   1 1
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   3 2
No Yes Cochliobolus victoriae FI3 v1.0   1 1
No Yes Cochliobolus carbonum 26-R-13 v1.0   1 1
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 2 2
No Yes Alternaria brassicicola   1 1
No Yes Cochliobolus lunatus m118 v2.0   2 1
No Yes Pyrenophora tritici-repentis   1 1
No Yes Mycosphaerella graminicola IPO323   2 2
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Coccidioides posadasii RMSCC 3488   1 1
No Yes Coccidioides immitis RS   1 1
No Yes Microsporum canis CBS 113480   1 1
No Yes Trichophyton equinum CBS 127.97   1 1
No Yes Trichophyton verrucosum HKI 0517   1 1
No Yes Arthroderma benhamiae CBS 112371   1 1
No Yes Trichophyton tonsurans CBS 112818   1 1
No Yes Trichophyton rubrum CBS 118892   1 1
No Yes Aspergillus zonatus v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus glaucus   4 4
No Yes Neosartorya fischeri NRRL 181   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus wentii v1.0   3 3
No Yes Aspergillus oryzae RIB40   3 3
No Yes Aspergillus flavus NRRL3357   4 4
No Yes Penicillium marneffei ATCC 18224   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   2 2
No Yes Dictyostelium discoideum   1 1
No Yes Selaginella moellendorffii   8 8
No Yes Pinus taeda Loblolly pine 3 3
No Yes Picea abies Norway spruce 3 3
No Yes Eucalyptus grandis v201 Rose gum 10 10
No Yes Theobroma cacao B97-61/B2 v1 Cacao 1 1
No Yes Gossypium raimondii v221   1 1
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 3 3
No Yes Thellungiella halophila v173   2 2
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 1 1
No Yes Capsella rubella v183   1 1
No Yes Arabidopsis lyrata Lyrate rockcress 1 1
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes Carica papaya Papaya 2 2
No Yes Medicago truncatula Barrel medic 5 5
No Yes Phaseolus vulgaris v186 French bean 1 1
No Yes Glycine max v109 Soybean 4 4
No Yes Fragaria vesca Wild strawberry 2 2
No Yes Malus domestica v196 Apple 5 5
No Yes Prunus persica v139 Peach 3 3
No Yes Linum usitatissimum v200 Flax 5 5
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 4 4
No Yes Vitis vinifera Wine grape 7 7
No Yes Solanum lycopersicum v.2.3 Tomato 3 3
No Yes Solanum tuberosum Potato 5 5
No Yes Actinidia chinensis Hongyang   2 2
No Yes Aquilegia coerulea v195   5 5
No Yes Triticum urartu 22   10 10
No Yes Triticum aestivum 22 Bread wheat 18 18
No Yes Aegilops tauschii 22   9 9
No Yes Brachypodium distachyon Stiff brome 4 4
No Yes Oryza barthii 22 African wild rice 7 7
No Yes Oryza meridionalis 22   9 9
No Yes Oryza glumaepatula 22   10 10
No Yes Oryza glaberrima African rice 7 7
No Yes Oryza punctata 22   7 7
No Yes Oryza nivara 22   9 9
No Yes Oryza brachyantha 22 Malo sina 10 10
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 11 11
No Yes Oryza sativa v193 Rice 11 11
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 10 10
No Yes Panicum virgatum v202 Switchgrass 8 8
No Yes Setaria italica v164 Foxtail millet 3 3
No Yes Zea mays subsp. mays Maize 9 9
No Yes Zea mays v181 Maize 8 8
No Yes Sorghum bicolor Sorghum 10 10
No Yes Musa balbisiana Balbis banana 5 5
No Yes Musa acuminata 22 Wild Malaysian banana 5 5
No Yes Amborella trichopoda 22   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Ostreococcus tauri   1 1
No Yes Bathycoccus prasinos   1 1
No Yes Micromonas sp. RCC299   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   4 4
No Yes Aureococcus anophagefferens   1 1
No Yes Pythium iwayamai DAOM BR242034 22   10 10
No Yes Pythium arrhenomanes ATCC 12531 22   11 11
No Yes Pythium ultimum v1.7-2   10 9
No Yes Pythium aphanidermatum DAOM BR444 22   12 12
No Yes Pythium irregulare DAOM BR486 22   3 3
No Yes Pythium vexans DAOM BR484 22   6 5
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora sojae 1.1   2 2
No Yes Phytophthora infestans T30-4   4 4
No Yes Phytophthora capsici   1 1
No Yes Cryptosporidium hominis   3 3
No Yes Cryptosporidium muris   3 3
No Yes Cryptosporidium parvum Iowa II   3 3
No Yes Neospora caninum   84 18
No Yes Toxoplasma gondii VEG   81 13
No Yes Toxoplasma gondii ME49   77 16
No Yes Toxoplasma gondii GT1   58 14
No Yes Symbiodinium minutum clade B1 v1.2   55 48
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Emiliania huxleyi CCMP1516   4 4
No Yes Pseudanabaena sp. PCC 7367   1 1
No Yes Deferribacter desulfuricans SSM1   1 1
No Yes Thermovibrio ammonificans HB-1   1 1
No Yes Polymorphum gilvum SL003B-26A1   1 1
No Yes Ochrobactrum anthropi ATCC 49188   1 1
No Yes Sinorhizobium fredii NGR234   1 1
No Yes Sinorhizobium meliloti AK83   1 1
No Yes Genome sequence of Rhizobium sp. strain IRBG74   1 1
No Yes Rhizobium etli CIAT 652   3 2
No Yes Rhizobium leguminosarum bv. viciae 3841   2 2
No Yes Agrobacterium tumefaciens str. C58   1 1
No Yes Agrobacterium radiobacter K84   1 1
No Yes Agrobacterium sp. H13-3   1 1
No Yes Agrobacterium vitis S4   1 1
No Yes Mesorhizobium sp. BNC1   2 2
No Yes Mesorhizobium opportunistum WSM2075   2 2
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   1 1
No Yes Mesorhizobium loti MAFF303099   4 4
No Yes Methylocella silvestris BL2   1 1
No Yes Beijerinckia indica subsp. indica ATCC 9039   1 1
No Yes Oligotropha carboxidovorans OM4   1 1
No Yes Nitrobacter winogradskyi Nb-255   1 1
No Yes Nitrobacter hamburgensis X14   1 1
No Yes Allochromatium vinosum DSM 180   1 1
No Yes Thiocystis violascens DSM 198   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 3 3
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 38 14
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 10 4
No Yes Ascaris suum Victoria/Ghent Pig roundworm 43 23
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 56 25
No Yes Paracoccidioides brasiliensis Pb01   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Coccidioides posadasii str. Silveira   1 1
No Yes Coccidioides immitis RMSCC 3703   1 1
No Yes Coccidioides immitis RMSCC 2394   1 1
No Yes Coccidioides immitis H538.4   1 1
No Yes Batrachochytrium dendrobatidis JEL423   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 1 1
No Yes Hordeum vulgare 22 Domesticated barley 14 14
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 11 11
No Yes Neospora caninum Nc-Liverpool 6.2   84 18
No Yes Desulfocapsa sulfexigens DSM 10523   2 1
No Yes Variovorax paradoxus EPS   2 1
No Yes Rhodobacter sphaeroides ATCC 17025   1 1
No Yes Sinorhizobium fredii USDA 257   3 2
No Yes Sinorhizobium fredii HH103   1 1
No Yes Sinorhizobium meliloti 2011   1 1
No Yes Sinorhizobium meliloti GR4   1 1
No Yes Sinorhizobium meliloti Rm41   1 1
No Yes Sinorhizobium meliloti SM11   1 1
No Yes Sinorhizobium meliloti BL225C   1 1
No Yes Sinorhizobium meliloti 1021   1 1
No Yes Rhizobium etli CFN 42   1 1
No Yes Rhizobium etli bv. mimosae str. Mim1   1 1
No Yes Rhizobium tropici CIAT 899   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   1 1
No Yes Mesorhizobium australicum WSM2073   1 1
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Rhodopseudomonas palustris HaA2   1 1
No Yes Thioflavicoccus mobilis 8321   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 20 20
No Yes Homo sapiens (NCBI version) Human 10 10
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 4 4
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 30 15
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 28 17
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 25 11
No Yes Lotus japonicus (Early assembly)   2 2
No Yes Malus x domestica (Duplicate) Apple 5 5
No Yes Ricinus communis (Early assembly) Castor bean 3 3
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   8 8
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 2 2
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 3 3
No Yes Phoenix dactylifera (Early draft) Date palm 2 2
No Yes Homo sapiens 69_37 Human 6 6
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 4 4
No Yes Gorilla gorilla 69_3.1 Western gorilla 3 3
No Yes Pongo abelii 69_2 Sumatran orangutan 3 3
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 3 3
No Yes Macaca mulatta 69_1 Rhesus monkey 3 3
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 3 3
No Yes Otolemur garnettii 69_3 Small-eared galago 4 4
No Yes Microcebus murinus 69_1 Gray mouse lemur 2 2
No Yes Rattus norvegicus 69_3.4 Norway rat 4 4
No Yes Mus musculus 69_38 House mouse 4 4
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 2 2
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 4 4
No Yes Cavia porcellus 69_3 Domestic guinea pig 4 4
No Yes Oryctolagus cuniculus 69_2 Rabbit 4 4
No Yes Ochotona princeps 69 American pika 3 3
No Yes Tupaia belangeri 69 Northern tree shrew 1 1
No Yes Sus scrofa 69_10.2 Pig 4 4
No Yes Bos taurus 69_3.1 Cattle 3 3
No Yes Vicugna pacos 69_1 Alpaca 2 2
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 3 3
No Yes Mustela putorius furo 69_1.0 Domestic ferret 4 4
No Yes Ailuropoda melanoleuca 69_1 Giant panda 4 4
No Yes Canis familiaris 69_3.1 Dog 3 3
No Yes Felis catus 69 Domestic cat 1 1
No Yes Equus caballus 69_2 Horse 3 3
No Yes Myotis lucifugus 69_2.0 Little brown bat 3 3
No Yes Pteropus vampyrus 69_1 Large flying fox 2 2
No Yes Sorex araneus 69_1 European shrew 3 3
No Yes Erinaceus europaeus 69 Western European hedgehog 2 2
No Yes Procavia capensis 69_1 Cape rock hyrax 3 3
No Yes Loxodonta africana 69_3 African savanna elephant 4 4
No Yes Echinops telfairi 69 Small Madagascar hedgehog 4 4
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 2 2
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 2 2
No Yes Macropus eugenii 69_1.0 Tammar wallaby 1 1
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 3 3
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 3 3
No Yes Ornithorhynchus anatinus 69_5 Platypus 3 3
No Yes Petromyzon marinus 69_7.0 Sea lamprey 1 1
No Yes Meleagris gallopavo 69_2 Turkey 3 3
No Yes Gallus gallus 69_2 Chicken 3 3
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 5 5
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 3 3
No Yes Anolis carolinensis 69_2.0 Green anole 3 3
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 2 2
No Yes Latimeria chalumnae 69_1 Coelacanth 3 3
No Yes Gadus morhua 69_1 Atlantic cod 4 4
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 7 5
No Yes Takifugu rubripes 69_4 Torafugu 3 3
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 8 6
No Yes Oryzias latipes 69_1 Japanese medaka 6 5
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 10 8
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 8 7
No Yes Danio rerio 69_9 Zebrafish 4 4
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 69 Vase tunicate 3 3
No Yes Drosophila melanogaster 69_5 Fruit fly 16 7
No Yes Caenorhabditis elegans 69_215 Roundworm 50 23
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   4 4
No Yes Dump top (Dump top) (meta-genome)   3 3
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   2 2
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   7901 5703
No Yes Protozoadb 2010_08 (Protozoadb)   169 47
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   821 559
No Yes Uniprot 2018_03 genome   11175 6909
No Yes Global Ocean Sampling Expedition (GOS)   46 46
No Yes NCBI plasmid sequences (Plasmids)   17 17
No Yes NCBI viral sequences (Viral)   10 9
No Yes PDB chains (SCOP 1.75) (PDB)   8 8
No Yes Protein Data Bank (all PDB sequenc)   98 97
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   208 208
No Yes TargetDB (Targets)   65 28
No Yes UniProt viral sequences (Viral)   3 2

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