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Kringle-like superfamily domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 59 significant domains in 47 proteins.

     

Sequence ID   Evalue   Region   Family  
1a0hA   5.32e-30   3-91   Kringle modules  
1b2iA   1.6e-52   3-82   SCOPe  
1bhtA   1.06e-47   93-172   Kringle modules  
1ceaA   2.08e-49   3-82   Kringle modules  
1ck7A   2.4e-21   308-364   Fibronectin type II module  
  4.99e-21   248-305   Fibronectin type II module  
  3.99e-20   192-247   Fibronectin type II module  
1cxwA   2.8e-23   3-58   Fibronectin type II module  
1e88A   2.4e-22   104-159   Fibronectin type II module  
  3.59e-22   44-99   Fibronectin type II module  
1eakA   1.36e-21   306-362   Fibronectin type II module  
  2.8e-21   246-303   Fibronectin type II module  
  2.2e-20   190-245   Fibronectin type II module  
1gmnA   1.16e-47   100-179   Kringle modules  
1gp9A   1.08e-47   94-173   Kringle modules  
1h8pA   2.2e-17   54-109   Fibronectin type II module  
  0.0000000000000124   22-66   Fibronectin type II module  
1hpjA   6.59e-49   1-79   Kringle modules  
1i5kA   9.1e-54   3-82   SCOPe  
1i71A   2.89e-50   1-79   Kringle modules  
1j7mA   2.8e-23   11-67   Fibronectin type II module  
1jfnA   4.16e-50   22-102   Kringle modules  
1kduA   2.54e-34   2-83   Kringle modules  
1ki0A   8.06e-51   83-163   Kringle modules  
  5.32e-49   176-253   Kringle modules  
  2.27e-48   3-82   Kringle modules  
1kivA   4.05e-53   1-78   Kringle modules  
1krnA   2.2e-55   1-81   Kringle modules  
1ks0A   3.2e-22   4-57   Fibronectin type II module  
1l6jA   4.59e-21   255-312   Fibronectin type II module  
  1.98e-20   199-254   Fibronectin type II module  
1nk1A   1.16e-47   100-179   Kringle modules  
1nl1A   8.33e-44   65-144   Kringle modules  
1nl2A   8.1e-44   65-144   Kringle modules  
1pdcA   2e-16   1-45   Fibronectin type II module  
1pk2A   2.09e-44   6-88   Kringle modules  
1pk4A   3.59e-54   1-79   Kringle modules  
1pkrA   1.62e-49   2-81   Kringle modules  
1pmlA   1.76e-44   2-84   Kringle modules  
1qo6A   8.19e-23   43-99   Fibronectin type II module  
1tpkA   1.87e-44   4-86   Kringle modules  
1urkA   7.75e-34   44-126   Kringle modules  
2dohX   1.07e-50   83-163   Kringle modules  
  1.98e-48   3-82   Kringle modules  
  1.73e-35   175-234   Kringle modules  
2fd6A   6.48e-34   39-121   Kringle modules  
2fn2A   1.3e-23   3-58   Fibronectin type II module  
2hppP   1.5e-31   1-79   Kringle modules  
2hpqP   6.36e-29   1-79   Kringle modules  
2i9aA   1.06e-33   51-133   Kringle modules  
2pf2A   9.71e-44   65-144   Kringle modules  
2pk4A   9.25e-55   1-80   Kringle modules  
2qj2A   1.16e-47   102-181   Kringle modules  
2sptA   7.98e-44   65-144   Kringle modules  
3bt2A   8.67e-34   51-133   Kringle modules  
3kivA   4.16e-53   1-79   Kringle modules  
4kivA   2.89e-52   1-79   Kringle modules  
5hpgA   8.21e-46   1-81   Kringle modules  

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Select to display   Genome       Domains   Proteins
No Yes ALL   48527 48527
No Yes Homo sapiens 76_38 Human 167 86
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 62 26
No Yes Gorilla gorilla 76_3.1 Western gorilla 89 40
No Yes Pongo abelii 76_2 Sumatran orangutan 60 27
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 54 29
No Yes Papio anubis 76 Olive baboon 58 29
No Yes Macaca mulatta 76_1 Rhesus monkey 93 48
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 107 65
No Yes Otolemur garnettii 76_3 Small-eared galago 47 25
No Yes Microcebus murinus 76_1 Gray mouse lemur 34 20
No Yes Rattus norvegicus 76_5.0 Norway rat 46 27
No Yes Mus musculus 76_38 House mouse 75 44
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 33 20
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 47 24
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 47 26
No Yes Cavia porcellus 76_3 Domestic guinea pig 53 27
No Yes Oryctolagus cuniculus 76_2 Rabbit 54 29
No Yes Ochotona princeps 76 American pika 39 22
No Yes Tupaia belangeri 76 Northern tree shrew 28 16
No Yes Sus scrofa 76_10.2 Pig 60 29
No Yes Bos taurus 76_3.1 Cattle 64 33
No Yes Ovis aries 76_3.1 Sheep 61 33
No Yes Vicugna pacos 76_1 Alpaca 22 13
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 36 21
No Yes Mustela putorius furo 76_1.0 Domestic ferret 48 25
No Yes Ailuropoda melanoleuca 76_1 Giant panda 60 31
No Yes Canis familiaris 76_3.1 Dog 77 41
No Yes Felis catus 76_6.2 Domestic cat 52 28
No Yes Equus caballus 76_2 Horse 57 30
No Yes Myotis lucifugus 76_2.0 Little brown bat 48 26
No Yes Pteropus vampyrus 76_1 Large flying fox 39 23
No Yes Sorex araneus 76_1 European shrew 29 17
No Yes Erinaceus europaeus 76 Western European hedgehog 35 18
No Yes Procavia capensis 76_1 Cape rock hyrax 44 23
No Yes Loxodonta africana 76_3 African savanna elephant 65 35
No Yes Echinops telfairi 76 Small Madagascar hedgehog 39 21
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 47 25
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 28 15
No Yes Macropus eugenii 76_1.0 Tammar wallaby 31 18
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 65 33
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 39 21
No Yes Ornithorhynchus anatinus 76_5 Platypus 53 24
No Yes Saccoglossus kowalevskii v3.0   101 30
No Yes Petromyzon marinus 76_7.0 Sea lamprey 18 9
No Yes Meleagris gallopavo 76_2 Turkey 49 26
No Yes Gallus gallus 76_4 Chicken 49 27
No Yes Anas platyrhynchos 76_1.0 Mallard 42 25
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 42 23
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 47 26
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 48 29
No Yes Anolis carolinensis 76_2.0 Green anole 72 29
No Yes Xenopus laevis African clawed frog 95 41
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 52 27
No Yes Latimeria chalumnae 76_1 Coelacanth 61 26
No Yes Lepisosteus oculatus 76 Spotted gar 61 32
No Yes Gadus morhua 76_1 Atlantic cod 48 26
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 81 39
No Yes Takifugu rubripes 76_4 Torafugu 277 139
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 78 41
No Yes Oryzias latipes 76_1 Japanese medaka 50 28
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 49 27
No Yes Poecilia formosa 76 Amazon molly 59 31
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 82 44
No Yes Astyanax mexicanus 76 Mexican tetra 60 35
No Yes Danio rerio 76_9 Zebrafish 67 41
No Yes Oikopleura dioica   40 29
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 29 16
No Yes Ciona intestinalis 76 Vase tunicate 26 18
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 54 31
No Yes Adineta vaga   18 14
No Yes Octopus bimaculoides 280   20 11
No Yes Crassostrea gigas 22 Pacific oyster 95 50
No Yes Lottia gigantea Owl limpet 31 22
No Yes Helobdella robusta   12 10
No Yes Capitella sp. I   57 50
No Yes Danaus plexippus OGS1.0 Monarch butterfly 2 2
No Yes Heliconius melpomene Postman butterfly 2 2
No Yes Bombyx mori Domestic silkworm 1 1
No Yes Nasonia vitripennis Jewel wasp 3 3
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 20 11
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 7 4
No Yes Linepithema humile v1.1 Argentine ant 7 4
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 4 4
No Yes Solenopsis invicta v.2.2.3 Red fire ant 3 3
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 5 4
No Yes Atta cephalotes v1.1   5 4
No Yes Camponotus floridanus v3.3 Florida carpenter ant 5 3
No Yes Lucilia cuprina Australian sheep blowfly 2 2
No Yes Drosophila grimshawi 1.3   2 2
No Yes Drosophila willistoni 1.3   2 2
No Yes Drosophila pseudoobscura 2.13   2 2
No Yes Drosophila persimilis 1.3   2 2
No Yes Drosophila suzukii   2 2
No Yes Drosophila yakuba 1.3   2 2
No Yes Drosophila simulans 1.3   2 2
No Yes Drosophila sechellia 1.3   2 2
No Yes Drosophila melanogaster 76_5 Fruit fly 2 2
No Yes Drosophila erecta 1.3   2 2
No Yes Drosophila ananassae 1.3   2 2
No Yes Drosophila virilis 1.2   2 2
No Yes Drosophila mojavensis 1.3   2 2
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 2 2
No Yes Culex pipiens quinquefasciatus Southern house mosquito 2 2
No Yes Anopheles darlingi 22 American malaria mosquito 2 2
No Yes Anopheles gambiae 49_3j African malaria mosquito 2 2
No Yes Tribolium castaneum 3.0 Red flour beetle 6 3
No Yes Pediculus humanus corporis (Early assembly) Human body louse 7 4
No Yes Acyrthosiphon pisum Pea aphid 3 3
No Yes Rhodnius prolixus 22   3 3
No Yes Daphnia pulex Common water flea 4 4
No Yes Strigamia maritima 22   3 3
No Yes Sarcoptes scabiei   2 2
No Yes Tetranychus urticae Two-spotted spider mite 4 4
No Yes Ixodes scapularis (Preliminary) Black-legged tick 2 2
No Yes Pristionchus pacificus   1 1
No Yes Meloidogyne incognita Southern root-knot nematode 4 4
No Yes Meloidogyne hapla   1 1
No Yes Onchocerca volvulus 22   2 2
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 5 5
No Yes Caenorhabditis japonica   4 4
No Yes Caenorhabditis brenneri   6 5
No Yes Caenorhabditis remanei   5 5
No Yes Caenorhabditis elegans 76_235 Roundworm 6 6
No Yes Caenorhabditis briggsae 2   4 4
No Yes Trichinella spiralis 22   9 6
No Yes Hymenolepis microstoma   4 3
No Yes Echinococcus multilocularis   3 2
No Yes Echinococcus granulosus   3 2
No Yes Taenia solium Pork tapeworm 3 2
No Yes Schistosoma mansoni   6 3
No Yes Mnemiopsis leidyi Sea walnut 58 41
No Yes Thelohanellus kitauei   1 1
No Yes Acropora digitifera v1.0   32 20
No Yes Nematostella vectensis 1.0 Starlet sea anemone 23 19
No Yes Hydra vulgaris   15 11
No Yes Amphimedon queenslandica   4 3
No Yes Trichoplax adhaerens   29 25
No Yes Proterospongia sp. ATCC 50818   9 7
No Yes Monosiga brevicollis   5 4
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Conidiobolus coronatus NRRL28638 v1.0   1 1
No Yes Spizellomyces punctatus DAOM BR117   1 1
No Yes Chlorella vulgaris   1 1
No Yes Ostreococcus sp. RCC809   2 2
No Yes Ostreococcus lucimarinus CCE9901   3 3
No Yes Ostreococcus tauri   5 5
No Yes Bathycoccus prasinos   11 8
No Yes Micromonas sp. RCC299   2 1
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania mexicana 2.4   1 1
No Yes Leishmania major strain Friedlin   1 1
No Yes Leishmania infantum JPCM5 2.4   1 1
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma cruzi strain CL Brener   1 1
No Yes Aureococcus anophagefferens   6 5
No Yes Fragilariopsis cylindrus   2 2
No Yes Thalassiosira pseudonana CCMP1335   5 3
No Yes Cryptosporidium hominis   1 1
No Yes Cryptosporidium muris   1 1
No Yes Cryptosporidium parvum Iowa II   1 1
No Yes Neospora caninum   1 1
No Yes Toxoplasma gondii VEG   1 1
No Yes Toxoplasma gondii ME49   1 1
No Yes Toxoplasma gondii GT1   1 1
No Yes Theileria annulata   1 1
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium vivax SaI-1 7.0   1 1
No Yes Plasmodium knowlesi strain H   1 1
No Yes Plasmodium yoelii ssp. yoelii 1   1 1
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Symbiodinium minutum clade B1 v1.2   10 10
No Yes Guillardia theta CCMP2712 v1.0   8 7
No Yes Emiliania huxleyi CCMP1516   25 20
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 56 28
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 2 2
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 2 2
No Yes Ascaris suum Victoria/Ghent Pig roundworm 2 2
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 6 6
No Yes Neospora caninum Nc-Liverpool 6.2   1 1
No Yes Plasmodium falciparum HB3   1 1
No Yes Plasmodium falciparum Dd2   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 185 96
No Yes Homo sapiens (NCBI version) Human 98 47
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 46 25
No Yes Loa loa v3.3 (Request) Eye worm 2 2
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 2 2
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 1 1
No Yes Homo sapiens 69_37 Human 71 30
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 61 25
No Yes Gorilla gorilla 69_3.1 Western gorilla 68 28
No Yes Pongo abelii 69_2 Sumatran orangutan 50 23
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 46 25
No Yes Macaca mulatta 69_1 Rhesus monkey 57 27
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 45 25
No Yes Otolemur garnettii 69_3 Small-eared galago 47 25
No Yes Microcebus murinus 69_1 Gray mouse lemur 34 20
No Yes Rattus norvegicus 69_3.4 Norway rat 46 25
No Yes Mus musculus 69_38 House mouse 47 26
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 33 20
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 42 22
No Yes Cavia porcellus 69_3 Domestic guinea pig 47 25
No Yes Oryctolagus cuniculus 69_2 Rabbit 48 26
No Yes Ochotona princeps 69 American pika 39 22
No Yes Tupaia belangeri 69 Northern tree shrew 28 16
No Yes Sus scrofa 69_10.2 Pig 55 27
No Yes Bos taurus 69_3.1 Cattle 53 28
No Yes Vicugna pacos 69_1 Alpaca 22 13
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 36 21
No Yes Mustela putorius furo 69_1.0 Domestic ferret 48 25
No Yes Ailuropoda melanoleuca 69_1 Giant panda 50 26
No Yes Canis familiaris 69_3.1 Dog 51 27
No Yes Felis catus 69 Domestic cat 32 22
No Yes Equus caballus 69_2 Horse 53 28
No Yes Myotis lucifugus 69_2.0 Little brown bat 48 26
No Yes Pteropus vampyrus 69_1 Large flying fox 39 23
No Yes Sorex araneus 69_1 European shrew 29 17
No Yes Erinaceus europaeus 69 Western European hedgehog 35 18
No Yes Procavia capensis 69_1 Cape rock hyrax 44 23
No Yes Loxodonta africana 69_3 African savanna elephant 49 27
No Yes Echinops telfairi 69 Small Madagascar hedgehog 39 21
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 26 17
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 28 15
No Yes Macropus eugenii 69_1.0 Tammar wallaby 31 18
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 46 26
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 39 21
No Yes Ornithorhynchus anatinus 69_5 Platypus 44 21
No Yes Petromyzon marinus 69_7.0 Sea lamprey 18 9
No Yes Meleagris gallopavo 69_2 Turkey 37 20
No Yes Gallus gallus 69_2 Chicken 40 23
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 42 23
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 39 23
No Yes Anolis carolinensis 69_2.0 Green anole 45 25
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 43 22
No Yes Latimeria chalumnae 69_1 Coelacanth 40 20
No Yes Gadus morhua 69_1 Atlantic cod 48 26
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 48 24
No Yes Takifugu rubripes 69_4 Torafugu 57 30
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 49 28
No Yes Oryzias latipes 69_1 Japanese medaka 46 24
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 49 27
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 55 30
No Yes Danio rerio 69_9 Zebrafish 49 29
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 15 8
No Yes Ciona intestinalis 69 Vase tunicate 25 17
No Yes Drosophila melanogaster 69_5 Fruit fly 2 2
No Yes Caenorhabditis elegans 69_215 Roundworm 4 4
No Yes NCBI 2017_08 genome   20935 11223
No Yes Protozoadb 2010_08 (Protozoadb)   22 22
No Yes STRING v9.0.5 (STRING)   1922 1137
No Yes Uniprot 2018_03 genome   12453 7169
No Yes Global Ocean Sampling Expedition (GOS)   87 74
No Yes PDB chains (SCOP 1.75) (PDB)   59 47
No Yes Protein Data Bank (all PDB sequenc)   267 202
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   577 577
No Yes TargetDB (Targets)   34 23

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