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Retrovirus zinc finger-like domains superfamily domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 13 significant domains in 12 proteins.

     

Sequence ID   Evalue   Region   Family  
1a1tA   3.79e-22   13-51   Retrovirus zinc finger-like domains  
1a6bB   0.0000000000033   2-35   Retrovirus zinc finger-like domains  
1aafA   4.53e-22   13-51   Retrovirus zinc finger-like domains  
1cl4A   0.00000000000011   30-59   Retrovirus zinc finger-like domains  
  0.0000293   2-21   Retrovirus zinc finger-like domains  
1dsqA   0.000000000000156   1-21   Retrovirus zinc finger-like domains  
1dsvA   0.00000000000000688   1-31   Retrovirus zinc finger-like domains  
1eskA   3.99e-22   1-40   Retrovirus zinc finger-like domains  
1nc8A   0.0000000000000128   2-29   Retrovirus zinc finger-like domains  
1q3yA   7.32e-19   1-40   Retrovirus zinc finger-like domains  
1u6pA   0.00000000000000805   3-50   Retrovirus zinc finger-like domains  
2ec7A   3.2e-17   8-45   Retrovirus zinc finger-like domains  
2exfA   4.73e-22   1-40   Retrovirus zinc finger-like domains  

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Select to display   Genome       Domains   Proteins
No Yes ALL   226615 226615
No Yes Homo sapiens 76_38 Human 114 77
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 28 20
No Yes Gorilla gorilla 76_3.1 Western gorilla 34 24
No Yes Pongo abelii 76_2 Sumatran orangutan 28 19
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 27 19
No Yes Papio anubis 76 Olive baboon 30 21
No Yes Macaca mulatta 76_1 Rhesus monkey 41 30
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 43 34
No Yes Otolemur garnettii 76_3 Small-eared galago 39 26
No Yes Microcebus murinus 76_1 Gray mouse lemur 19 15
No Yes Rattus norvegicus 76_5.0 Norway rat 37 27
No Yes Mus musculus 76_38 House mouse 57 41
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 31 17
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 28 18
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 28 21
No Yes Cavia porcellus 76_3 Domestic guinea pig 32 22
No Yes Oryctolagus cuniculus 76_2 Rabbit 37 26
No Yes Ochotona princeps 76 American pika 20 15
No Yes Tupaia belangeri 76 Northern tree shrew 15 10
No Yes Sus scrofa 76_10.2 Pig 44 36
No Yes Bos taurus 76_3.1 Cattle 33 22
No Yes Ovis aries 76_3.1 Sheep 57 44
No Yes Vicugna pacos 76_1 Alpaca 21 15
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 26 18
No Yes Mustela putorius furo 76_1.0 Domestic ferret 25 18
No Yes Ailuropoda melanoleuca 76_1 Giant panda 29 22
No Yes Canis familiaris 76_3.1 Dog 40 26
No Yes Felis catus 76_6.2 Domestic cat 73 63
No Yes Equus caballus 76_2 Horse 30 22
No Yes Myotis lucifugus 76_2.0 Little brown bat 38 27
No Yes Pteropus vampyrus 76_1 Large flying fox 21 15
No Yes Sorex araneus 76_1 European shrew 20 13
No Yes Erinaceus europaeus 76 Western European hedgehog 17 13
No Yes Procavia capensis 76_1 Cape rock hyrax 17 13
No Yes Loxodonta africana 76_3 African savanna elephant 35 26
No Yes Echinops telfairi 76 Small Madagascar hedgehog 21 12
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 65 45
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 24 15
No Yes Macropus eugenii 76_1.0 Tammar wallaby 22 15
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 52 43
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 62 50
No Yes Ornithorhynchus anatinus 76_5 Platypus 19 15
No Yes Saccoglossus kowalevskii v3.0   143 118
No Yes Petromyzon marinus 76_7.0 Sea lamprey 11 8
No Yes Meleagris gallopavo 76_2 Turkey 22 16
No Yes Gallus gallus 76_4 Chicken 26 20
No Yes Anas platyrhynchos 76_1.0 Mallard 23 17
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 23 16
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 27 19
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 37 30
No Yes Anolis carolinensis 76_2.0 Green anole 129 127
No Yes Xenopus laevis African clawed frog 76 56
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 143 127
No Yes Latimeria chalumnae 76_1 Coelacanth 66 59
No Yes Lepisosteus oculatus 76 Spotted gar 89 68
No Yes Gadus morhua 76_1 Atlantic cod 36 27
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 27 22
No Yes Takifugu rubripes 76_4 Torafugu 45 38
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 44 36
No Yes Oryzias latipes 76_1 Japanese medaka 45 36
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 30 24
No Yes Poecilia formosa 76 Amazon molly 24 18
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 37 29
No Yes Astyanax mexicanus 76 Mexican tetra 39 31
No Yes Danio rerio 76_9 Zebrafish 101 79
No Yes Oikopleura dioica   14 12
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 33 21
No Yes Ciona intestinalis 76 Vase tunicate 25 19
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 113 104
No Yes Adineta vaga   59 44
No Yes Octopus bimaculoides 280   69 58
No Yes Crassostrea gigas 22 Pacific oyster 48 46
No Yes Lottia gigantea Owl limpet 88 77
No Yes Helobdella robusta   79 75
No Yes Capitella sp. I   84 76
No Yes Danaus plexippus OGS1.0 Monarch butterfly 40 35
No Yes Heliconius melpomene Postman butterfly 23 20
No Yes Bombyx mori Domestic silkworm 86 77
No Yes Nasonia vitripennis Jewel wasp 58 53
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 38 25
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 162 151
No Yes Linepithema humile v1.1 Argentine ant 45 44
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 24 23
No Yes Solenopsis invicta v.2.2.3 Red fire ant 39 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 30 27
No Yes Atta cephalotes v1.1   18 15
No Yes Camponotus floridanus v3.3 Florida carpenter ant 127 124
No Yes Lucilia cuprina Australian sheep blowfly 14 14
No Yes Drosophila grimshawi 1.3   2 2
No Yes Drosophila willistoni 1.3   8 8
No Yes Drosophila pseudoobscura 2.13   14 10
No Yes Drosophila persimilis 1.3   2 2
No Yes Drosophila suzukii   13 10
No Yes Drosophila yakuba 1.3   5 5
No Yes Drosophila simulans 1.3   2 2
No Yes Drosophila sechellia 1.3   3 3
No Yes Drosophila melanogaster 76_5 Fruit fly 22 15
No Yes Drosophila erecta 1.3   3 3
No Yes Drosophila ananassae 1.3   2 2
No Yes Drosophila virilis 1.2   1 1
No Yes Drosophila mojavensis 1.3   1 1
No Yes Megaselia scalaris 22   12 9
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 28 27
No Yes Culex pipiens quinquefasciatus Southern house mosquito 39 35
No Yes Anopheles darlingi 22 American malaria mosquito 12 12
No Yes Anopheles gambiae 49_3j African malaria mosquito 9 6
No Yes Tribolium castaneum 3.0 Red flour beetle 140 128
No Yes Pediculus humanus corporis (Early assembly) Human body louse 17 13
No Yes Acyrthosiphon pisum Pea aphid 36 31
No Yes Rhodnius prolixus 22   55 47
No Yes Daphnia pulex Common water flea 204 201
No Yes Strigamia maritima 22   148 134
No Yes Sarcoptes scabiei   10 9
No Yes Tetranychus urticae Two-spotted spider mite 29 20
No Yes Ixodes scapularis (Preliminary) Black-legged tick 42 34
No Yes Pristionchus pacificus   37 30
No Yes Meloidogyne incognita Southern root-knot nematode 101 90
No Yes Meloidogyne hapla   53 49
No Yes Onchocerca volvulus 22   9 8
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 15 12
No Yes Caenorhabditis japonica   155 148
No Yes Caenorhabditis brenneri   53 44
No Yes Caenorhabditis remanei   124 111
No Yes Caenorhabditis elegans 76_235 Roundworm 35 26
No Yes Caenorhabditis briggsae 2   43 39
No Yes Trichinella spiralis 22   63 61
No Yes Hymenolepis microstoma   15 10
No Yes Echinococcus multilocularis   12 10
No Yes Echinococcus granulosus   8 7
No Yes Taenia solium Pork tapeworm 9 6
No Yes Schistosoma mansoni   22 16
No Yes Mnemiopsis leidyi Sea walnut 68 58
No Yes Thelohanellus kitauei   123 123
No Yes Acropora digitifera v1.0   158 136
No Yes Nematostella vectensis 1.0 Starlet sea anemone 37 26
No Yes Hydra vulgaris   73 60
No Yes Amphimedon queenslandica   94 88
No Yes Trichoplax adhaerens   17 12
No Yes Proterospongia sp. ATCC 50818   14 13
No Yes Monosiga brevicollis   10 8
No Yes Sphaeroforma arctica JP610   32 27
No Yes Capsaspora owczarzaki ATCC 30864   19 10
No Yes Conidiobolus coronatus NRRL28638 v1.0   20 15
No Yes Mortierella verticillata NRRL 6337   36 22
No Yes Phycomyces blakesleeanus   49 48
No Yes Rhizopus oryzae RA 99-880   119 113
No Yes Mucor circinelloides   35 30
No Yes Rhizomucor miehei CAU432   26 22
No Yes Malassezia globosa CBS 7966   14 8
No Yes Sporisorium reilianum 22   19 12
No Yes Ustilago maydis   17 11
No Yes Mixia osmundae IAM 14324 v1.0   13 10
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   59 55
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   165 159
No Yes Melampsora laricis-populina   41 41
No Yes Rhodotorula graminis WP1 v1.0   12 9
No Yes Sporobolomyces roseus IAM 13481   9 7
No Yes Microbotryum violaceum 22   25 15
No Yes Wallemia sebi v1.0   8 8
No Yes Sphaerobolus stellatus v1.0   197 193
No Yes Piloderma croceum F 1598 v1.0   50 48
No Yes Serpula lacrymans var. lacrymans S7.9   171 169
No Yes Coniophora puteana   17 15
No Yes Hydnomerulius pinastri v2.0   22 19
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   26 22
No Yes Pisolithus microcarpus 441 v1.0   80 75
No Yes Pisolithus tinctorius Marx 270 v1.0   172 169
No Yes Scleroderma citrinum Foug A v1.0   109 105
No Yes Coprinopsis cinerea okayama7 130 v3   24 18
No Yes Pleurotus ostreatus Oyster mushroom 30 29
No Yes Amanita thiersii Skay4041 v1.0   232 230
No Yes Amanita muscaria Koide v1.0 Fly agaric 55 50
No Yes Galerina marginata v1.0   46 42
No Yes Hebeloma cylindrosporum h7 v2.0   20 19
No Yes Laccaria bicolor S238N-H82   34 33
No Yes Agaricus bisporus var. bisporus   91 88
No Yes Schizophyllum commune   33 32
No Yes Stereum hirsutum FP-91666 SS1 v1.0   34 27
No Yes Heterobasidion annosum   72 70
No Yes Gloeophyllum trabeumv1.0   23 21
No Yes Punctularia strigosozonata v1.0   29 27
No Yes Sebacina vermifera MAFF 305830 v1.0   17 13
No Yes Fomitiporia mediterranea v1.0   19 12
No Yes Tulasnella calospora AL13/4D v1.0   13 12
No Yes Postia placenta   155 146
No Yes Wolfiporia cocos MD-104 SS10 v1.0   48 47
No Yes Fomitopsis pinicolav1.0   30 25
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   23 18
No Yes Phanerochaete chrysosporium RP-78 2.1   48 44
No Yes Dichomitus squalens   35 27
No Yes Trametes versicolor v1.0   32 31
No Yes Tremella mesenterica Witches' butter 158 154
No Yes Daldinia eschscholzii EC12 v1.0   10 10
No Yes Apiospora montagnei NRRL 25634 v1.0   20 14
No Yes Magnaporthe poae ATCC 64411 22   21 11
No Yes Magnaporthe grisea 70-15   17 9
No Yes Podospora anserina   17 9
No Yes Sporotrichum thermophile ATCC 42464   6 6
No Yes Thielavia terrestris NRRL 8126   14 11
No Yes Chaetomium globosum CBS 148.51   60 50
No Yes Neurospora tetrasperma   5 5
No Yes Neurospora discreta FGSC 8579   3 3
No Yes Neurospora crassa OR74A   20 10
No Yes Cryphonectria parasitica Chestnut blight fungus 3 3
No Yes Verticillium albo-atrum VaMs.102   16 9
No Yes Verticillium dahliae VdLs.17   13 7
No Yes Acremonium alcalophilumv 1.0   4 4
No Yes Glomerella graminicola 22   23 12
No Yes Fusarium graminearum   16 8
No Yes Nectria haematococca mpVI   5 5
No Yes Fusarium oxysporum f. sp. lycopersici 4286   16 11
No Yes Fusarium verticillioides 7600   18 9
No Yes Trichoderma asperellum CBS 433.97 v1.0   7 5
No Yes Trichoderma atroviride   9 5
No Yes Trichoderma citrinoviride v1.0   4 4
No Yes Trichoderma reesei 1.2   2 2
No Yes Trichoderma virens Gv29-8   6 6
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   6 6
No Yes Trichoderma harzianum CBS 226.95 v1.0   19 11
No Yes Amorphotheca resinae v1.0 Creosote fungus 9 8
No Yes Botrytis cinerea B05.10   39 29
No Yes Sclerotinia sclerotiorum   68 58
No Yes Blumeria graminis 22   17 9
No Yes Didymella exigua CBS 183.55 v1.0   12 11
No Yes Leptosphaeria maculans 22   17 7
No Yes Setosphaeria turcica v1.0   12 12
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   2 2
No Yes Cochliobolus victoriae FI3 v1.0   3 3
No Yes Cochliobolus carbonum 26-R-13 v1.0   4 4
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 27 27
No Yes Alternaria brassicicola   17 7
No Yes Cochliobolus lunatus m118 v2.0   5 4
No Yes Pyrenophora teres f. teres 22   27 19
No Yes Pyrenophora tritici-repentis   19 11
No Yes Stagonospora nodorum   25 10
No Yes Mycosphaerella graminicola IPO323   4 4
No Yes Zasmidium cellare ATCC 36951 v1.0   5 5
No Yes Dothistroma septosporum   5 5
No Yes Septoria musiva v1.0   4 4
No Yes Mycosphaerella fijiensis CIRAD86   1 1
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   9 7
No Yes Paracoccidioides brasiliensis Pb18   32 26
No Yes Coccidioides posadasii RMSCC 3488   12 6
No Yes Coccidioides immitis RS   18 7
No Yes Ajellomyces dermatitidis SLH14081   19 9
No Yes Histoplasma capsulatum class NAmI strain WU24   16 9
No Yes Microsporum canis CBS 113480   15 6
No Yes Trichophyton equinum CBS 127.97   13 7
No Yes Trichophyton verrucosum HKI 0517   5 5
No Yes Arthroderma benhamiae CBS 112371   6 6
No Yes Trichophyton tonsurans CBS 112818   17 7
No Yes Trichophyton rubrum CBS 118892   16 7
No Yes Uncinocarpus reesii 1704   10 6
No Yes Aspergillus zonatus v1.0   10 5
No Yes Penicillium chrysogenum Wisconsin 54-1255   21 10
No Yes Penicillium chrysogenum v1.0   9 8
No Yes Aspergillus acidus v1.0   10 10
No Yes Aspergillus fumigatus Af293   14 6
No Yes Aspergillus brasiliensis v1.0   8 7
No Yes Aspergillus nidulans FGSC A4   16 9
No Yes Aspergillus sydowii v1.0   9 9
No Yes Aspergillus versicolor v1.0   6 4
No Yes Aspergillus glaucus   15 10
No Yes Neosartorya fischeri NRRL 181   17 8
No Yes Aspergillus terreus NIH2624   14 6
No Yes Aspergillus tubingensis v1.0   4 3
No Yes Aspergillus wentii v1.0   8 7
No Yes Aspergillus oryzae RIB40   13 10
No Yes Aspergillus niger 22   14 5
No Yes Aspergillus niger ATCC 1015   2 2
No Yes Aspergillus flavus NRRL3357   12 7
No Yes Aspergillus clavatus NRRL 1   16 6
No Yes Penicillium marneffei ATCC 18224   30 20
No Yes Tuber melanosporum Mel28 22   10 6
No Yes Tuber melanosporum Vittad Perigord truffle 29 23
No Yes Hansenula polymorpha v2.0   3 2
No Yes Dekkera bruxellensis CBS 2499 v2.0   9 9
No Yes Pichia membranifaciensv1.0   5 4
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   4 4
No Yes Candida dubliniensis CD36   13 10
No Yes Candida tropicalis MYA-3404   4 4
No Yes Candida parapsilosis   8 5
No Yes Candida albicans SC5314   10 7
No Yes Lodderomyces elongisporus NRRL YB-4239   18 15
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   3 3
No Yes Pichia stipitis CBS 6054   5 4
No Yes Candida guilliermondii ATCC 6260   6 3
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   4 4
No Yes Debaromyces hansenii   7 4
No Yes Wickerhamomyces anomalus   5 5
No Yes Pichia pastoris GS115   8 5
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   3 3
No Yes Yarrowia lipolytica CLIB122   13 8
No Yes Candida lusitaniae ATCC 42720   6 4
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   4 4
No Yes Vanderwaltozyma polyspora DSM 70294   15 11
No Yes Candida glabrata CBS138   13 7
No Yes Kluyveromyces thermotolerans CBS 6340   10 5
No Yes Lachancea kluyveri   10 6
No Yes Kluyveromyces waltii   20 14
No Yes Ashbya gossypii ATCC 10895   10 6
No Yes Zygosaccharomyces rouxii   9 6
No Yes Saccharomyces mikatae MIT   13 8
No Yes Saccharomyces paradoxus MIT   13 7
No Yes Saccharomyces cerevisiae 76 Baker's yeast 17 11
No Yes Saccharomyces bayanus MIT   11 6
No Yes Kluyveromyces lactis   6 4
No Yes Schizosaccharomyces cryophilus OY26 22   10 5
No Yes Schizosaccharomyces octosporus yFS286   10 5
No Yes Schizosaccharomyces japonicus yFS275   16 10
No Yes Schizosaccharomyces pombe Fission yeast 10 5
No Yes Catenaria anguillulae PL171 v1.0   46 42
No Yes Allomyces macrogynus ATCC 38327   45 39
No Yes Spizellomyces punctatus DAOM BR117   33 31
No Yes Dictyostelium discoideum   15 12
No Yes Dictyostelium purpureum   25 25
No Yes Entamoeba dispar 1.2   12 9
No Yes Entamoeba invadens 1.2   48 42
No Yes Entamoeba histolytica 1   13 10
No Yes Selaginella moellendorffii   45 43
No Yes Pinus taeda Loblolly pine 75 68
No Yes Picea abies Norway spruce 43 32
No Yes Eucalyptus grandis v201 Rose gum 91 81
No Yes Theobroma cacao B97-61/B2 v1 Cacao 1047 980
No Yes Gossypium raimondii v221   235 183
No Yes Citrus clementina v165   96 71
No Yes Citrus sinensis v154 Sweet orange 131 100
No Yes Thellungiella halophila v173   111 90
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 86 61
No Yes Capsella rubella v183   72 46
No Yes Arabidopsis lyrata Lyrate rockcress 62 45
No Yes Arabidopsis thaliana 10 Thale cress 78 54
No Yes Carica papaya Papaya 42 33
No Yes Medicago truncatula Barrel medic 26 25
No Yes Phaseolus vulgaris v186 French bean 58 47
No Yes Glycine max v109 Soybean 163 144
No Yes Cucumis sativus v122 Cucumber 85 68
No Yes Fragaria vesca Wild strawberry 161 137
No Yes Malus domestica v196 Apple 166 127
No Yes Prunus persica v139 Peach 119 105
No Yes Linum usitatissimum v200 Flax 80 66
No Yes Manihot esculenta v147 Cassava 134 107
No Yes Populus trichocarpa v156 Black cottonwood 138 110
No Yes Vitis vinifera Wine grape 55 38
No Yes Mimulus guttatus v140 Spotted monkey flower 48 37
No Yes Solanum lycopersicum v.2.3 Tomato 85 73
No Yes Solanum tuberosum Potato 194 160
No Yes Actinidia chinensis Hongyang   136 108
No Yes Aquilegia coerulea v195   116 89
No Yes Triticum urartu 22   90 73
No Yes Triticum aestivum 22 Bread wheat 193 151
No Yes Aegilops tauschii 22   54 44
No Yes Brachypodium distachyon Stiff brome 116 89
No Yes Oryza barthii 22 African wild rice 63 45
No Yes Oryza meridionalis 22   68 43
No Yes Oryza glumaepatula 22   75 61
No Yes Oryza glaberrima African rice 71 54
No Yes Oryza punctata 22   104 75
No Yes Oryza nivara 22   86 64
No Yes Oryza brachyantha 22 Malo sina 73 61
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 2245 2066
No Yes Oryza sativa v193 Rice 2216 2042
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 81 57
No Yes Panicum virgatum v202 Switchgrass 180 153
No Yes Setaria italica v164 Foxtail millet 124 100
No Yes Zea mays subsp. mays Maize 185 141
No Yes Zea mays v181 Maize 180 137
No Yes Sorghum bicolor Sorghum 251 218
No Yes Musa balbisiana Balbis banana 937 908
No Yes Musa acuminata 22 Wild Malaysian banana 32 32
No Yes Amborella trichopoda 22   71 53
No Yes Physcomitrella patens   177 169
No Yes Coccomyxa subellipsoidea sp. C-169 v2   15 13
No Yes Asterochloris sp. Cgr/DA1pho v1.0   7 7
No Yes Chlorella variabilis sp. NC64A   15 13
No Yes Chlorella vulgaris   13 12
No Yes Volvox carteri f. nagariensis   35 32
No Yes Volvox carteri v199   30 30
No Yes Chlamydomonas reinhardtii 4.0   10 10
No Yes Ostreococcus sp. RCC809   8 5
No Yes Ostreococcus lucimarinus CCE9901   16 7
No Yes Ostreococcus tauri   16 9
No Yes Bathycoccus prasinos   20 13
No Yes Micromonas sp. RCC299   10 8
No Yes Micromonas pusilla CCMP1545 v3.0   27 16
No Yes Cyanidioschyzon merolae strain 10D 22   4 3
No Yes Cyanidioschyzon merolae   4 3
No Yes Porphyridium purpureum 02_2012   36 34
No Yes Thecamonas trahens ATCC 50062   26 15
No Yes Bigelowiella natans CCMP2755 22   9 9
No Yes Giardia lamblia 2.3   1 1
No Yes Cyanophora paradoxa   28 25
No Yes Leishmania mexicana 2.4   21 10
No Yes Leishmania major strain Friedlin   21 9
No Yes Leishmania infantum JPCM5 2.4   23 10
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   23 9
No Yes Trypanosoma vivax   39 17
No Yes Trypanosoma cruzi strain CL Brener   25 12
No Yes Trypanosoma congolense 2.4   21 14
No Yes Trypanosoma brucei gambiense v4.1   21 11
No Yes Trypanosoma brucei TREU927 v4.1   20 10
No Yes Ectocarpus siliculosus   11 10
No Yes Aureococcus anophagefferens   10 8
No Yes Albugo laibachii 22   56 53
No Yes Pythium iwayamai DAOM BR242034 22   17 15
No Yes Pythium arrhenomanes ATCC 12531 22   10 10
No Yes Pythium ultimum v1.7-2   63 59
No Yes Pythium aphanidermatum DAOM BR444 22   19 14
No Yes Pythium irregulare DAOM BR486 22   18 14
No Yes Pythium vexans DAOM BR484 22   20 15
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 166 157
No Yes Phytophthora sojae 1.1   262 252
No Yes Phytophthora infestans T30-4   118 107
No Yes Phytophthora capsici   36 35
No Yes Hyaloperonospora arabidopsidis 22   13 13
No Yes Phaeodactylum tricornutumCCAP 1055/1   10 8
No Yes Fragilariopsis cylindrus   33 29
No Yes Thalassiosira pseudonana CCMP1335   12 10
No Yes Perkinsus marinus ATCC 50983   184 154
No Yes Paramecium tetraurelia   42 38
No Yes Tetrahymena thermophila SB210 1   43 37
No Yes Ichthyophthirius multifiliis strain G5   13 9
No Yes Cryptosporidium hominis   3 3
No Yes Cryptosporidium muris   4 4
No Yes Cryptosporidium parvum Iowa II   3 3
No Yes Neospora caninum   5 4
No Yes Toxoplasma gondii VEG   2 2
No Yes Toxoplasma gondii ME49   4 4
No Yes Toxoplasma gondii GT1   3 3
No Yes Babesia bovis T2Bo   8 6
No Yes Theileria parva   3 3
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium vivax SaI-1 7.0   1 1
No Yes Plasmodium knowlesi strain H   2 2
No Yes Plasmodium yoelii ssp. yoelii 1   1 1
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Symbiodinium minutum clade B1 v1.2   405 400
No Yes Naegleria gruberi   5 5
No Yes Trichomonas vaginalis   4 3
No Yes Guillardia theta CCMP2712 v1.0   18 16
No Yes Emiliania huxleyi CCMP1516   40 36
No Yes Stigmatella aurantiaca DW4/3-1   1 1
No Yes Corallococcus coralloides DSM 2259   1 1
No Yes Thioalkalivibrio sp. K90mix   2 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 177 158
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 20 13
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 21 11
No Yes Ascaris suum Victoria/Ghent Pig roundworm 11 9
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 31 23
No Yes Cryptococcus neoformans var. grubii H99   18 12
No Yes Cryptococcus neoformans B-3501A   22 14
No Yes Cryptococcus neoformans JEC21   19 11
No Yes Paracoccidioides brasiliensis Pb01   27 22
No Yes Paracoccidioides brasiliensis Pb03   16 11
No Yes Coccidioides posadasii str. Silveira   19 10
No Yes Coccidioides immitis RMSCC 3703   10 6
No Yes Coccidioides immitis RMSCC 2394   19 10
No Yes Coccidioides immitis H538.4   13 8
No Yes Ajellomyces dermatitidis ER-3   23 13
No Yes Histoplasma capsulatum H143   10 5
No Yes Histoplasma capsulatum H88   14 7
No Yes Histoplasma capsulatum G186AR   15 7
No Yes Aspergillus fumigatus A1163   14 6
No Yes Candida albicans WO-1   9 6
No Yes Saccharomyces cerevisiae UC5   16 10
No Yes Saccharomyces cerevisiae PW5   16 10
No Yes Saccharomyces cerevisiae FL100   6 4
No Yes Saccharomyces cerevisiae CLIB382   4 2
No Yes Saccharomyces cerevisiae CLIB324   10 5
No Yes Saccharomyces cerevisiae CBS7960   13 7
No Yes Saccharomyces cerevisiae YJM269   14 8
No Yes Saccharomyces cerevisiae T7   15 9
No Yes Saccharomyces cerevisiae FostersB   10 6
No Yes Saccharomyces cerevisiae FostersO   9 6
No Yes Saccharomyces cerevisiae VL3   13 6
No Yes Saccharomyces cerevisiae Vin13   11 5
No Yes Saccharomyces cerevisiae LalvinQA23   12 6
No Yes Saccharomyces cerevisiae AWRI796   11 6
No Yes Saccharomyces cerevisiae Sigma1278b   16 10
No Yes Saccharomyces cerevisiae W303   17 11
No Yes Saccharomyces cerevisiae JAY291   15 9
No Yes Saccharomyces cerevisiae AWRI1631   13 7
No Yes Saccharomyces cerevisiae YPS163   6 4
No Yes Saccharomyces cerevisiae M22   6 4
No Yes Saccharomyces cerevisiae T73   8 4
No Yes Saccharomyces cerevisiae CLIB215   11 6
No Yes Saccharomyces cerevisiae Y10   6 3
No Yes Saccharomyces cerevisiae YJM789   12 6
No Yes Saccharomyces cerevisiae YJM789   13 7
No Yes Saccharomyces cerevisiae RM11-1a   13 7
No Yes Saccharomyces cerevisiae RM11-1a   13 7
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 18 12
No Yes Schizosaccharomyces pombe 972h-   10 5
No Yes Batrachochytrium dendrobatidis JEL423   25 22
No Yes Batrachochytrium dendrobatidis JAM81   9 8
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 799 771
No Yes Hordeum vulgare 22 Domesticated barley 171 124
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 312 276
No Yes Trypanosoma brucei Lister 427 v4.1   20 10
No Yes Neospora caninum Nc-Liverpool 6.2   5 4
No Yes Plasmodium falciparum HB3   1 1
No Yes Plasmodium falciparum Dd2   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 114 75
No Yes Homo sapiens (NCBI version) Human 71 41
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 31 21
No Yes Heliconius numata (Incomplete)   7 6
No Yes Loa loa v3.3 (Request) Eye worm 12 9
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 16 13
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 11 8
No Yes Moniliophthora perniciosa FA553 (Genome survey)   30 30
No Yes Encephalitozoon intestinalis (endoparasite)   2 2
No Yes Encephalitozoon cuniculi (endoparasite)   3 2
No Yes Picea sitchensis (Incomplete) Sitka spruce 11 6
No Yes Lotus japonicus (Early assembly)   163 115
No Yes Malus x domestica (Duplicate) Apple 166 127
No Yes Ricinus communis (Early assembly) Castor bean 46 34
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   126 103
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 84 73
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 85 73
No Yes Phoenix dactylifera (Early draft) Date palm 38 36
No Yes Homo sapiens 69_37 Human 31 22
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 27 19
No Yes Gorilla gorilla 69_3.1 Western gorilla 26 19
No Yes Pongo abelii 69_2 Sumatran orangutan 25 18
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 24 17
No Yes Macaca mulatta 69_1 Rhesus monkey 28 21
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 27 21
No Yes Otolemur garnettii 69_3 Small-eared galago 39 26
No Yes Microcebus murinus 69_1 Gray mouse lemur 19 15
No Yes Rattus norvegicus 69_3.4 Norway rat 31 24
No Yes Mus musculus 69_38 House mouse 31 21
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 31 17
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 28 18
No Yes Cavia porcellus 69_3 Domestic guinea pig 31 21
No Yes Oryctolagus cuniculus 69_2 Rabbit 31 22
No Yes Ochotona princeps 69 American pika 20 15
No Yes Tupaia belangeri 69 Northern tree shrew 15 10
No Yes Sus scrofa 69_10.2 Pig 38 31
No Yes Bos taurus 69_3.1 Cattle 33 22
No Yes Vicugna pacos 69_1 Alpaca 21 15
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 26 18
No Yes Mustela putorius furo 69_1.0 Domestic ferret 25 18
No Yes Ailuropoda melanoleuca 69_1 Giant panda 29 22
No Yes Canis familiaris 69_3.1 Dog 32 21
No Yes Felis catus 69 Domestic cat 16 11
No Yes Equus caballus 69_2 Horse 27 20
No Yes Myotis lucifugus 69_2.0 Little brown bat 38 27
No Yes Pteropus vampyrus 69_1 Large flying fox 21 15
No Yes Sorex araneus 69_1 European shrew 20 13
No Yes Erinaceus europaeus 69 Western European hedgehog 17 13
No Yes Procavia capensis 69_1 Cape rock hyrax 17 13
No Yes Loxodonta africana 69_3 African savanna elephant 27 19
No Yes Echinops telfairi 69 Small Madagascar hedgehog 21 12
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 14 12
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 24 15
No Yes Macropus eugenii 69_1.0 Tammar wallaby 22 15
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 49 40
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 58 49
No Yes Ornithorhynchus anatinus 69_5 Platypus 19 15
No Yes Petromyzon marinus 69_7.0 Sea lamprey 10 7
No Yes Meleagris gallopavo 69_2 Turkey 22 16
No Yes Gallus gallus 69_2 Chicken 23 17
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 23 16
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 34 28
No Yes Anolis carolinensis 69_2.0 Green anole 84 79
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 117 105
No Yes Latimeria chalumnae 69_1 Coelacanth 61 54
No Yes Gadus morhua 69_1 Atlantic cod 29 22
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 25 20
No Yes Takifugu rubripes 69_4 Torafugu 29 23
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 39 33
No Yes Oryzias latipes 69_1 Japanese medaka 33 28
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 30 24
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 32 25
No Yes Danio rerio 69_9 Zebrafish 56 48
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 20 12
No Yes Ciona intestinalis 69 Vase tunicate 24 18
No Yes Drosophila melanogaster 69_5 Fruit fly 15 11
No Yes Caenorhabditis elegans 69_215 Roundworm 27 19
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 17 11
No Yes Arabidopsis thaliana 10 Thale cress 58 38
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   48 48
No Yes Combined (meta-genome)   3 3
No Yes Core Eukaryotic Genes 458 (CEGMA)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   4 4
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   4 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   2 2
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Endophytic microbiome from Rice (meta-genome)   169 164
No Yes Fungus garden combined (combined) (meta-genome)   4 4
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   9 8
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   3 2
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   3 3
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   48276 36954
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   4 4
No Yes Protozoadb 2010_08 (Protozoadb)   262 161
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   18 18
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   8 8
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   9 8
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   3 3
No Yes STRING v9.0.5 (STRING)   6544 5607
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   1 1
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   2 2
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   3 3
No Yes Uniprot 2018_03 genome   102777 91155
No Yes Global Ocean Sampling Expedition (GOS)   361 330
No Yes NCBI viral sequences (Viral)   137 128
No Yes PDB chains (SCOP 1.75) (PDB)   13 12
No Yes Protein Data Bank (all PDB sequenc)   111 105
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   119 119
No Yes TargetDB (Targets)   127 78
No Yes UniProt viral sequences (Viral)   18929 18889

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