SUPERFAMILY 1.75 HMM library and genome assignments server

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B-box zinc-binding domain superfamily domain assignments
in
Brachybacterium faecium DSM 4810


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Select to display   Genome       Domains   Proteins
No Yes ALL   87491 87491
No Yes Homo sapiens 76_38 Human 399 398
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 76 76
No Yes Gorilla gorilla 76_3.1 Western gorilla 121 121
No Yes Pongo abelii 76_2 Sumatran orangutan 76 75
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 71 70
No Yes Papio anubis 76 Olive baboon 72 72
No Yes Macaca mulatta 76_1 Rhesus monkey 161 160
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 158 157
No Yes Otolemur garnettii 76_3 Small-eared galago 64 64
No Yes Microcebus murinus 76_1 Gray mouse lemur 49 48
No Yes Rattus norvegicus 76_5.0 Norway rat 59 59
No Yes Mus musculus 76_38 House mouse 170 170
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 53 53
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 62 62
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 51 51
No Yes Cavia porcellus 76_3 Domestic guinea pig 59 59
No Yes Oryctolagus cuniculus 76_2 Rabbit 69 68
No Yes Ochotona princeps 76 American pika 49 49
No Yes Tupaia belangeri 76 Northern tree shrew 42 42
No Yes Sus scrofa 76_10.2 Pig 115 114
No Yes Bos taurus 76_3.1 Cattle 77 76
No Yes Ovis aries 76_3.1 Sheep 80 80
No Yes Vicugna pacos 76_1 Alpaca 27 27
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 43 43
No Yes Mustela putorius furo 76_1.0 Domestic ferret 58 58
No Yes Ailuropoda melanoleuca 76_1 Giant panda 65 65
No Yes Canis familiaris 76_3.1 Dog 72 71
No Yes Felis catus 76_6.2 Domestic cat 66 66
No Yes Equus caballus 76_2 Horse 62 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 75 73
No Yes Pteropus vampyrus 76_1 Large flying fox 53 53
No Yes Sorex araneus 76_1 European shrew 46 46
No Yes Erinaceus europaeus 76 Western European hedgehog 50 50
No Yes Procavia capensis 76_1 Cape rock hyrax 47 46
No Yes Loxodonta africana 76_3 African savanna elephant 117 117
No Yes Echinops telfairi 76 Small Madagascar hedgehog 45 44
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 89 87
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 35 35
No Yes Macropus eugenii 76_1.0 Tammar wallaby 42 42
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 103 101
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 108 108
No Yes Ornithorhynchus anatinus 76_5 Platypus 68 68
No Yes Saccoglossus kowalevskii v3.0   174 173
No Yes Petromyzon marinus 76_7.0 Sea lamprey 18 18
No Yes Meleagris gallopavo 76_2 Turkey 38 37
No Yes Gallus gallus 76_4 Chicken 41 41
No Yes Anas platyrhynchos 76_1.0 Mallard 37 37
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 33 33
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 39 39
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 130 130
No Yes Anolis carolinensis 76_2.0 Green anole 86 84
No Yes Xenopus laevis African clawed frog 99 99
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 168 164
No Yes Latimeria chalumnae 76_1 Coelacanth 139 137
No Yes Lepisosteus oculatus 76 Spotted gar 129 127
No Yes Gadus morhua 76_1 Atlantic cod 139 137
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 78 78
No Yes Takifugu rubripes 76_4 Torafugu 309 309
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 196 195
No Yes Oryzias latipes 76_1 Japanese medaka 118 118
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 93 92
No Yes Poecilia formosa 76 Amazon molly 170 167
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 227 224
No Yes Astyanax mexicanus 76 Mexican tetra 137 135
No Yes Danio rerio 76_9 Zebrafish 289 288
No Yes Oikopleura dioica   8 8
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 16 16
No Yes Ciona intestinalis 76 Vase tunicate 10 10
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 351 343
No Yes Adineta vaga   27 27
No Yes Octopus bimaculoides 280   31 31
No Yes Crassostrea gigas 22 Pacific oyster 570 564
No Yes Lottia gigantea Owl limpet 52 52
No Yes Helobdella robusta   35 35
No Yes Capitella sp. I   28 28
No Yes Danaus plexippus OGS1.0 Monarch butterfly 9 9
No Yes Heliconius melpomene Postman butterfly 8 8
No Yes Bombyx mori Domestic silkworm 6 6
No Yes Nasonia vitripennis Jewel wasp 9 9
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 19 19
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 12 12
No Yes Linepithema humile v1.1 Argentine ant 10 10
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 9 9
No Yes Solenopsis invicta v.2.2.3 Red fire ant 10 10
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 9 9
No Yes Atta cephalotes v1.1   10 10
No Yes Camponotus floridanus v3.3 Florida carpenter ant 11 11
No Yes Lucilia cuprina Australian sheep blowfly 9 9
No Yes Drosophila grimshawi 1.3   9 9
No Yes Drosophila willistoni 1.3   8 8
No Yes Drosophila pseudoobscura 2.13   7 7
No Yes Drosophila persimilis 1.3   8 8
No Yes Drosophila suzukii   6 6
No Yes Drosophila yakuba 1.3   8 8
No Yes Drosophila simulans 1.3   8 8
No Yes Drosophila sechellia 1.3   9 9
No Yes Drosophila melanogaster 76_5 Fruit fly 26 26
No Yes Drosophila erecta 1.3   9 9
No Yes Drosophila ananassae 1.3   8 8
No Yes Drosophila virilis 1.2   9 9
No Yes Drosophila mojavensis 1.3   7 7
No Yes Megaselia scalaris 22   2 2
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 18 18
No Yes Culex pipiens quinquefasciatus Southern house mosquito 24 24
No Yes Anopheles darlingi 22 American malaria mosquito 8 8
No Yes Anopheles gambiae 49_3j African malaria mosquito 10 10
No Yes Tribolium castaneum 3.0 Red flour beetle 10 10
No Yes Pediculus humanus corporis (Early assembly) Human body louse 9 9
No Yes Acyrthosiphon pisum Pea aphid 7 7
No Yes Rhodnius prolixus 22   6 6
No Yes Daphnia pulex Common water flea 7 7
No Yes Strigamia maritima 22   14 14
No Yes Sarcoptes scabiei   2 2
No Yes Tetranychus urticae Two-spotted spider mite 3 3
No Yes Ixodes scapularis (Preliminary) Black-legged tick 7 7
No Yes Pristionchus pacificus   4 4
No Yes Meloidogyne incognita Southern root-knot nematode 6 6
No Yes Meloidogyne hapla   4 4
No Yes Onchocerca volvulus 22   7 7
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 12 12
No Yes Caenorhabditis japonica   7 7
No Yes Caenorhabditis brenneri   35 31
No Yes Caenorhabditis remanei   17 16
No Yes Caenorhabditis elegans 76_235 Roundworm 23 23
No Yes Caenorhabditis briggsae 2   8 8
No Yes Trichinella spiralis 22   3 3
No Yes Hymenolepis microstoma   7 7
No Yes Echinococcus multilocularis   7 7
No Yes Echinococcus granulosus   7 7
No Yes Taenia solium Pork tapeworm 7 7
No Yes Schistosoma mansoni   10 10
No Yes Mnemiopsis leidyi Sea walnut 12 12
No Yes Thelohanellus kitauei   1 1
No Yes Acropora digitifera v1.0   85 78
No Yes Nematostella vectensis 1.0 Starlet sea anemone 85 85
No Yes Hydra vulgaris   10 10
No Yes Amphimedon queenslandica   254 252
No Yes Trichoplax adhaerens   6 6
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 1
No Yes Conidiobolus coronatus NRRL28638 v1.0   1 1
No Yes Mortierella verticillata NRRL 6337   1 1
No Yes Phycomyces blakesleeanus   1 1
No Yes Mucor circinelloides   1 1
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   20 20
No Yes Pisolithus tinctorius Marx 270 v1.0   2 2
No Yes Scleroderma citrinum Foug A v1.0   1 1
No Yes Coprinopsis cinerea okayama7 130 v3   1 1
No Yes Amanita thiersii Skay4041 v1.0   1 1
No Yes Amanita muscaria Koide v1.0 Fly agaric 1 1
No Yes Hebeloma cylindrosporum h7 v2.0   1 1
No Yes Schizophyllum commune   1 1
No Yes Sebacina vermifera MAFF 305830 v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   2 2
No Yes Postia placenta   1 1
No Yes Fomitopsis pinicolav1.0   1 1
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   1 1
No Yes Dichomitus squalens   1 1
No Yes Tremella mesenterica Witches' butter 1 1
No Yes Daldinia eschscholzii EC12 v1.0   1 1
No Yes Apiospora montagnei NRRL 25634 v1.0   1 1
No Yes Magnaporthe poae ATCC 64411 22   1 1
No Yes Magnaporthe grisea 70-15   1 1
No Yes Podospora anserina   1 1
No Yes Thielavia terrestris NRRL 8126   1 1
No Yes Neurospora tetrasperma   1 1
No Yes Neurospora discreta FGSC 8579   1 1
No Yes Cryphonectria parasitica Chestnut blight fungus 1 1
No Yes Verticillium albo-atrum VaMs.102   1 1
No Yes Verticillium dahliae VdLs.17   1 1
No Yes Acremonium alcalophilumv 1.0   1 1
No Yes Glomerella graminicola 22   1 1
No Yes Fusarium graminearum   1 1
No Yes Nectria haematococca mpVI   1 1
No Yes Fusarium oxysporum f. sp. lycopersici 4286   1 1
No Yes Fusarium verticillioides 7600   1 1
No Yes Trichoderma asperellum CBS 433.97 v1.0   1 1
No Yes Trichoderma atroviride   1 1
No Yes Trichoderma citrinoviride v1.0   1 1
No Yes Trichoderma reesei 1.2   1 1
No Yes Trichoderma virens Gv29-8   1 1
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   1 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   1 1
No Yes Amorphotheca resinae v1.0 Creosote fungus 1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Didymella exigua CBS 183.55 v1.0   1 1
No Yes Leptosphaeria maculans 22   1 1
No Yes Setosphaeria turcica v1.0   1 1
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   1 1
No Yes Cochliobolus victoriae FI3 v1.0   1 1
No Yes Cochliobolus carbonum 26-R-13 v1.0   1 1
No Yes Alternaria brassicicola   1 1
No Yes Cochliobolus lunatus m118 v2.0   1 1
No Yes Pyrenophora teres f. teres 22   1 1
No Yes Pyrenophora tritici-repentis   1 1
No Yes Stagonospora nodorum   1 1
No Yes Mycosphaerella graminicola IPO323   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Dothistroma septosporum   1 1
No Yes Septoria musiva v1.0   1 1
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Coccidioides posadasii RMSCC 3488   1 1
No Yes Coccidioides immitis RS   1 1
No Yes Ajellomyces dermatitidis SLH14081   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium marneffei ATCC 18224   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Dekkera bruxellensis CBS 2499 v2.0   1 1
No Yes Candida glabrata CBS138   1 1
No Yes Catenaria anguillulae PL171 v1.0   4 4
No Yes Allomyces macrogynus ATCC 38327   6 6
No Yes Spizellomyces punctatus DAOM BR117   4 4
No Yes Dictyostelium discoideum   79 77
No Yes Dictyostelium purpureum   50 49
No Yes Entamoeba dispar 1.2   1 1
No Yes Entamoeba invadens 1.2   2 2
No Yes Entamoeba histolytica 1   2 2
No Yes Selaginella moellendorffii   9 9
No Yes Pinus taeda Loblolly pine 3 3
No Yes Picea abies Norway spruce 3 3
No Yes Eucalyptus grandis v201 Rose gum 10 10
No Yes Theobroma cacao B97-61/B2 v1 Cacao 6 6
No Yes Gossypium raimondii v221   13 13
No Yes Citrus clementina v165   11 11
No Yes Citrus sinensis v154 Sweet orange 6 6
No Yes Thellungiella halophila v173   6 6
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 8 8
No Yes Capsella rubella v183   2 2
No Yes Arabidopsis lyrata Lyrate rockcress 2 2
No Yes Arabidopsis thaliana 10 Thale cress 2 2
No Yes Carica papaya Papaya 7 7
No Yes Medicago truncatula Barrel medic 9 9
No Yes Phaseolus vulgaris v186 French bean 7 7
No Yes Glycine max v109 Soybean 15 15
No Yes Cucumis sativus v122 Cucumber 4 4
No Yes Fragaria vesca Wild strawberry 5 5
No Yes Malus domestica v196 Apple 1 1
No Yes Prunus persica v139 Peach 3 3
No Yes Linum usitatissimum v200 Flax 6 6
No Yes Manihot esculenta v147 Cassava 5 5
No Yes Populus trichocarpa v156 Black cottonwood 9 9
No Yes Vitis vinifera Wine grape 4 4
No Yes Mimulus guttatus v140 Spotted monkey flower 3 3
No Yes Solanum lycopersicum v.2.3 Tomato 14 14
No Yes Solanum tuberosum Potato 6 6
No Yes Actinidia chinensis Hongyang   5 5
No Yes Aquilegia coerulea v195   6 6
No Yes Triticum urartu 22   1 1
No Yes Triticum aestivum 22 Bread wheat 1 1
No Yes Oryza barthii 22 African wild rice 1 1
No Yes Oryza meridionalis 22   1 1
No Yes Oryza glumaepatula 22   3 3
No Yes Oryza punctata 22   1 1
No Yes Oryza nivara 22   1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 1 1
No Yes Oryza sativa v193 Rice 1 1
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 2 2
No Yes Panicum virgatum v202 Switchgrass 2 2
No Yes Setaria italica v164 Foxtail millet 3 3
No Yes Musa balbisiana Balbis banana 3 3
No Yes Musa acuminata 22 Wild Malaysian banana 3 3
No Yes Physcomitrella patens   8 8
No Yes Asterochloris sp. Cgr/DA1pho v1.0   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Cyanidioschyzon merolae strain 10D 22   1 1
No Yes Cyanidioschyzon merolae   1 1
No Yes Thecamonas trahens ATCC 50062   8 8
No Yes Giardia lamblia 2.3   2 2
No Yes Cyanophora paradoxa   6 6
No Yes Leishmania mexicana 2.4   4 4
No Yes Leishmania major strain Friedlin   5 5
No Yes Leishmania infantum JPCM5 2.4   5 5
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   5 5
No Yes Trypanosoma vivax   4 4
No Yes Trypanosoma cruzi strain CL Brener   5 5
No Yes Trypanosoma congolense 2.4   4 4
No Yes Trypanosoma brucei gambiense v4.1   4 3
No Yes Trypanosoma brucei TREU927 v4.1   4 3
No Yes Ectocarpus siliculosus   4 4
No Yes Albugo laibachii 22   1 1
No Yes Pythium iwayamai DAOM BR242034 22   5 5
No Yes Pythium arrhenomanes ATCC 12531 22   2 2
No Yes Pythium ultimum v1.7-2   3 3
No Yes Pythium aphanidermatum DAOM BR444 22   2 2
No Yes Pythium irregulare DAOM BR486 22   4 4
No Yes Pythium vexans DAOM BR484 22   3 3
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 2 2
No Yes Phytophthora sojae 1.1   4 4
No Yes Phytophthora infestans T30-4   4 4
No Yes Phytophthora capsici   3 3
No Yes Hyaloperonospora arabidopsidis 22   2 2
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Paramecium tetraurelia   66 66
No Yes Tetrahymena thermophila SB210 1   52 52
No Yes Ichthyophthirius multifiliis strain G5   10 10
No Yes Cryptosporidium hominis   3 3
No Yes Cryptosporidium muris   4 4
No Yes Cryptosporidium parvum Iowa II   4 4
No Yes Neospora caninum   5 5
No Yes Toxoplasma gondii VEG   4 4
No Yes Toxoplasma gondii ME49   4 4
No Yes Toxoplasma gondii GT1   3 3
No Yes Babesia bovis T2Bo   8 8
No Yes Theileria parva   3 3
No Yes Theileria annulata   3 3
No Yes Plasmodium falciparum 3D7   3 3
No Yes Plasmodium vivax SaI-1 7.0   4 4
No Yes Plasmodium knowlesi strain H   4 4
No Yes Plasmodium yoelii ssp. yoelii 1   3 3
No Yes Plasmodium chabaudi   3 3
No Yes Plasmodium berghei ANKA   3 3
No Yes Symbiodinium minutum clade B1 v1.2   6 6
No Yes Naegleria gruberi   11 11
No Yes Trichomonas vaginalis   18 18
No Yes Guillardia theta CCMP2712 v1.0   2 2
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Thermobaculum terrenum ATCC BAA-798   1 1
No Yes Rubrobacter xylanophilus DSM 9941   1 1
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   1 1
No Yes Thermomonospora curvata DSM 43183   1 1
No Yes Streptomyces flavogriseus ATCC 33331   1 1
No Yes Streptomyces sp. SirexAA-E   1 1
No Yes Streptomyces griseus subsp. griseus NBRC 13350   1 1
No Yes Streptomyces avermitilis MA-4680   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   1 1
No Yes Saccharomonospora viridis DSM 43017   1 1
No Yes Nocardioides sp. JS614   1 1
No Yes Gordonia bronchialis DSM 43247   1 1
No Yes Rhodococcus equi 103S   1 1
No Yes Nocardia farcinica IFM 10152   1 1
No Yes Mycobacterium sp. JLS   1 1
No Yes Mycobacterium tuberculosis KZN 1435   1 1
No Yes Mycobacterium rhodesiae NBB3   1 1
No Yes Mycobacterium gilvum PYR-GCK   1 1
No Yes Mycobacterium chubuense NBB4   1 1
No Yes Mycobacterium marinum M   1 1
No Yes Beutenbergia cavernae DSM 12333   1 1
No Yes Intrasporangium calvum DSM 43043   1 1
No Yes Xylanimonas cellulosilytica DSM 15894   1 1
No Yes Arthrobacter phenanthrenivorans Sphe3   1 1
No Yes Arthrobacter sp. FB24   1 1
No Yes Thermomicrobium roseum DSM 5159   1 1
No Yes Sphaerobacter thermophilus DSM 20745   1 1
No Yes Roseiflexus sp. RS-1   1 1
No Yes Chloroflexus sp. Y-400-fl   1 1
No Yes Chloroflexus aggregans DSM 9485   1 1
No Yes Chloroflexus aurantiacus J-10-fl   1 1
No Yes Sulfobacillus acidophilus DSM 10332   2 2
No Yes Syntrophothermus lipocalidus DSM 12680   1 1
No Yes Coraliomargarita akajimensis DSM 45221   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   1 1
No Yes Candidatus Koribacter versatilis Ellin345   1 1
No Yes Acidobacterium capsulatum ATCC 51196   1 1
No Yes Desulfomonile tiedjei DSM 6799   1 1
No Yes Myxococcus xanthus DK 1622   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 212 190
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 20 20
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 11 11
No Yes Ascaris suum Victoria/Ghent Pig roundworm 5 5
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 20 20
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Paracoccidioides brasiliensis Pb01   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Coccidioides posadasii str. Silveira   1 1
No Yes Coccidioides immitis RMSCC 3703   1 1
No Yes Coccidioides immitis RMSCC 2394   1 1
No Yes Coccidioides immitis H538.4   1 1
No Yes Ajellomyces dermatitidis ER-3   1 1
No Yes Histoplasma capsulatum H143   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JEL423   2 2
No Yes Batrachochytrium dendrobatidis JAM81   2 2
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 4 4
No Yes Hordeum vulgare 22 Domesticated barley 1 1
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Trypanosoma brucei Lister 427 v4.1   4 3
No Yes Neospora caninum Nc-Liverpool 6.2   5 5
No Yes Plasmodium falciparum HB3   3 3
No Yes Plasmodium falciparum Dd2   3 3
No Yes Streptomyces davawensis JCM 4913   1 1
No Yes Streptomyces fulvissimus DSM 40593   1 1
No Yes Streptomyces venezuelae ATCC 10712   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   1 1
No Yes Saccharothrix espanaensis DSM 44229   1 1
No Yes Rhodococcus pyridinivorans SB3094   1 1
No Yes Mycobacterium sp. KMS   1 1
No Yes Mycobacterium sp. MCS   1 1
No Yes Mycobacterium tuberculosis KZN 605   1 1
No Yes Mycobacterium tuberculosis KZN 4207   1 1
No Yes Mycobacterium tuberculosis str. Haarlem   1 1
No Yes Mycobacterium tuberculosis F11   1 1
No Yes Mycobacterium tuberculosis CDC1551   1 1
No Yes Mycobacterium gilvum Spyr1   1 1
No Yes Mycobacterium kansasii ATCC 12478   1 1
No Yes Actinomyces viscosus C505   1 1
No Yes Sulfobacillus acidophilus TPY   2 2
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 435 434
No Yes Homo sapiens (NCBI version) Human 125 124
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 72 72
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 5 5
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 6 6
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 5 5
No Yes Encephalitozoon intestinalis (endoparasite)   1 1
No Yes Encephalitozoon cuniculi (endoparasite)   1 1
No Yes Lotus japonicus (Early assembly)   3 3
No Yes Malus x domestica (Duplicate) Apple 1 1
No Yes Ricinus communis (Early assembly) Castor bean 5 5
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   4 4
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 14 14
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 14 14
No Yes Phoenix dactylifera (Early draft) Date palm 2 2
No Yes Homo sapiens 69_37 Human 152 150
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 70 70
No Yes Gorilla gorilla 69_3.1 Western gorilla 80 80
No Yes Pongo abelii 69_2 Sumatran orangutan 74 73
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 68 67
No Yes Macaca mulatta 69_1 Rhesus monkey 74 73
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 80 79
No Yes Otolemur garnettii 69_3 Small-eared galago 64 64
No Yes Microcebus murinus 69_1 Gray mouse lemur 49 48
No Yes Rattus norvegicus 69_3.4 Norway rat 61 61
No Yes Mus musculus 69_38 House mouse 74 74
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 53 53
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 58 58
No Yes Cavia porcellus 69_3 Domestic guinea pig 57 57
No Yes Oryctolagus cuniculus 69_2 Rabbit 65 64
No Yes Ochotona princeps 69 American pika 49 49
No Yes Tupaia belangeri 69 Northern tree shrew 42 42
No Yes Sus scrofa 69_10.2 Pig 75 74
No Yes Bos taurus 69_3.1 Cattle 71 70
No Yes Vicugna pacos 69_1 Alpaca 27 27
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 43 43
No Yes Mustela putorius furo 69_1.0 Domestic ferret 58 58
No Yes Ailuropoda melanoleuca 69_1 Giant panda 63 63
No Yes Canis familiaris 69_3.1 Dog 64 63
No Yes Felis catus 69 Domestic cat 46 45
No Yes Equus caballus 69_2 Horse 61 59
No Yes Myotis lucifugus 69_2.0 Little brown bat 74 72
No Yes Pteropus vampyrus 69_1 Large flying fox 53 53
No Yes Sorex araneus 69_1 European shrew 46 46
No Yes Erinaceus europaeus 69 Western European hedgehog 50 50
No Yes Procavia capensis 69_1 Cape rock hyrax 47 46
No Yes Loxodonta africana 69_3 African savanna elephant 99 99
No Yes Echinops telfairi 69 Small Madagascar hedgehog 45 44
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 34 34
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 35 35
No Yes Macropus eugenii 69_1.0 Tammar wallaby 42 42
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 88 86
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 106 106
No Yes Ornithorhynchus anatinus 69_5 Platypus 60 60
No Yes Petromyzon marinus 69_7.0 Sea lamprey 18 18
No Yes Meleagris gallopavo 69_2 Turkey 30 29
No Yes Gallus gallus 69_2 Chicken 37 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 33 33
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 115 115
No Yes Anolis carolinensis 69_2.0 Green anole 81 80
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 157 153
No Yes Latimeria chalumnae 69_1 Coelacanth 124 122
No Yes Gadus morhua 69_1 Atlantic cod 130 128
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 68 68
No Yes Takifugu rubripes 69_4 Torafugu 72 72
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 147 146
No Yes Oryzias latipes 69_1 Japanese medaka 98 98
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 89 88
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 201 198
No Yes Danio rerio 69_9 Zebrafish 201 200
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 7 7
No Yes Ciona intestinalis 69 Vase tunicate 10 10
No Yes Drosophila melanogaster 69_5 Fruit fly 9 9
No Yes Caenorhabditis elegans 69_215 Roundworm 19 19
No Yes Arabidopsis thaliana 10 Thale cress 2 2
No Yes 4_050719Q (meta-genome)   2 2
No Yes 5_050719P (meta-genome)   2 2
No Yes Dump bottom (Dump bottom) (meta-genome)   2 2
No Yes Dump top (Dump top) (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   2 2
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   7 7
No Yes NCBI 2017_08 genome   40155 39852
No Yes Protozoadb 2010_08 (Protozoadb)   149 148
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   18 18
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   9 9
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   3040 3006
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   21902 21699
No Yes Global Ocean Sampling Expedition (GOS)   8 8
No Yes PDB chains (SCOP 1.75) (PDB)   7 7
No Yes Protein Data Bank (all PDB sequenc)   43 43
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   47 47
No Yes TargetDB (Targets)   86 86

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