SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Cysteine-rich domain superfamily domain assignments
in
Clostridium perfringens ATCC 13124


No domain assignments for these genomes.


Add assignments from groups of genomes

View all assignments containing a Cysteine-rich domain domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   146909 146909
No Yes Homo sapiens 76_38 Human 312 255
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 65 50
No Yes Gorilla gorilla 76_3.1 Western gorilla 90 73
No Yes Pongo abelii 76_2 Sumatran orangutan 77 60
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 77 61
No Yes Papio anubis 76 Olive baboon 89 68
No Yes Macaca mulatta 76_1 Rhesus monkey 126 101
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 182 141
No Yes Otolemur garnettii 76_3 Small-eared galago 79 60
No Yes Microcebus murinus 76_1 Gray mouse lemur 56 45
No Yes Rattus norvegicus 76_5.0 Norway rat 90 70
No Yes Mus musculus 76_38 House mouse 216 176
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 60 47
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 74 58
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 92 77
No Yes Cavia porcellus 76_3 Domestic guinea pig 103 83
No Yes Oryctolagus cuniculus 76_2 Rabbit 70 53
No Yes Ochotona princeps 76 American pika 60 48
No Yes Tupaia belangeri 76 Northern tree shrew 50 42
No Yes Sus scrofa 76_10.2 Pig 73 60
No Yes Bos taurus 76_3.1 Cattle 79 60
No Yes Ovis aries 76_3.1 Sheep 87 67
No Yes Vicugna pacos 76_1 Alpaca 39 30
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 67 52
No Yes Mustela putorius furo 76_1.0 Domestic ferret 74 58
No Yes Ailuropoda melanoleuca 76_1 Giant panda 84 65
No Yes Canis familiaris 76_3.1 Dog 105 81
No Yes Felis catus 76_6.2 Domestic cat 73 56
No Yes Equus caballus 76_2 Horse 91 72
No Yes Myotis lucifugus 76_2.0 Little brown bat 62 50
No Yes Pteropus vampyrus 76_1 Large flying fox 63 52
No Yes Sorex araneus 76_1 European shrew 48 41
No Yes Erinaceus europaeus 76 Western European hedgehog 48 38
No Yes Procavia capensis 76_1 Cape rock hyrax 62 51
No Yes Loxodonta africana 76_3 African savanna elephant 115 92
No Yes Echinops telfairi 76 Small Madagascar hedgehog 53 45
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 100 74
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 38 29
No Yes Macropus eugenii 76_1.0 Tammar wallaby 60 49
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 77 65
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 70 58
No Yes Ornithorhynchus anatinus 76_5 Platypus 63 53
No Yes Saccoglossus kowalevskii v3.0   97 82
No Yes Petromyzon marinus 76_7.0 Sea lamprey 34 28
No Yes Meleagris gallopavo 76_2 Turkey 63 46
No Yes Gallus gallus 76_4 Chicken 67 51
No Yes Anas platyrhynchos 76_1.0 Mallard 58 46
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 65 49
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 63 49
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 79 62
No Yes Anolis carolinensis 76_2.0 Green anole 72 55
No Yes Xenopus laevis African clawed frog 103 86
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 83 67
No Yes Latimeria chalumnae 76_1 Coelacanth 82 66
No Yes Lepisosteus oculatus 76 Spotted gar 96 78
No Yes Gadus morhua 76_1 Atlantic cod 96 75
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 116 94
No Yes Takifugu rubripes 76_4 Torafugu 340 265
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 115 86
No Yes Oryzias latipes 76_1 Japanese medaka 107 84
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 98 76
No Yes Poecilia formosa 76 Amazon molly 106 84
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 142 111
No Yes Astyanax mexicanus 76 Mexican tetra 100 79
No Yes Danio rerio 76_9 Zebrafish 157 126
No Yes Oikopleura dioica   28 21
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 96 66
No Yes Ciona intestinalis 76 Vase tunicate 21 17
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 38 30
No Yes Adineta vaga   105 73
No Yes Octopus bimaculoides 280   74 64
No Yes Crassostrea gigas 22 Pacific oyster 33 26
No Yes Lottia gigantea Owl limpet 31 23
No Yes Helobdella robusta   39 29
No Yes Capitella sp. I   34 26
No Yes Danaus plexippus OGS1.0 Monarch butterfly 34 26
No Yes Heliconius melpomene Postman butterfly 20 17
No Yes Bombyx mori Domestic silkworm 24 20
No Yes Nasonia vitripennis Jewel wasp 28 20
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 46 33
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 34 26
No Yes Linepithema humile v1.1 Argentine ant 35 29
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 34 29
No Yes Solenopsis invicta v.2.2.3 Red fire ant 23 20
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 33 25
No Yes Atta cephalotes v1.1   31 25
No Yes Camponotus floridanus v3.3 Florida carpenter ant 36 29
No Yes Lucilia cuprina Australian sheep blowfly 30 22
No Yes Drosophila grimshawi 1.3   34 25
No Yes Drosophila willistoni 1.3   31 22
No Yes Drosophila pseudoobscura 2.13   34 25
No Yes Drosophila persimilis 1.3   29 21
No Yes Drosophila suzukii   29 23
No Yes Drosophila yakuba 1.3   35 26
No Yes Drosophila simulans 1.3   29 22
No Yes Drosophila sechellia 1.3   28 22
No Yes Drosophila melanogaster 76_5 Fruit fly 134 95
No Yes Drosophila erecta 1.3   32 24
No Yes Drosophila ananassae 1.3   33 25
No Yes Drosophila virilis 1.2   32 24
No Yes Drosophila mojavensis 1.3   32 24
No Yes Megaselia scalaris 22   10 9
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 33 27
No Yes Culex pipiens quinquefasciatus Southern house mosquito 38 32
No Yes Anopheles darlingi 22 American malaria mosquito 21 19
No Yes Anopheles gambiae 49_3j African malaria mosquito 30 23
No Yes Tribolium castaneum 3.0 Red flour beetle 43 34
No Yes Pediculus humanus corporis (Early assembly) Human body louse 36 29
No Yes Acyrthosiphon pisum Pea aphid 28 21
No Yes Rhodnius prolixus 22   29 22
No Yes Daphnia pulex Common water flea 48 40
No Yes Strigamia maritima 22   35 29
No Yes Sarcoptes scabiei   27 21
No Yes Tetranychus urticae Two-spotted spider mite 36 25
No Yes Ixodes scapularis (Preliminary) Black-legged tick 28 21
No Yes Pristionchus pacificus   26 21
No Yes Meloidogyne incognita Southern root-knot nematode 30 21
No Yes Meloidogyne hapla   20 15
No Yes Onchocerca volvulus 22   35 28
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 46 37
No Yes Caenorhabditis japonica   38 30
No Yes Caenorhabditis brenneri   51 38
No Yes Caenorhabditis remanei   53 38
No Yes Caenorhabditis elegans 76_235 Roundworm 113 80
No Yes Caenorhabditis briggsae 2   42 30
No Yes Trichinella spiralis 22   32 27
No Yes Hymenolepis microstoma   25 18
No Yes Echinococcus multilocularis   23 19
No Yes Echinococcus granulosus   23 19
No Yes Taenia solium Pork tapeworm 26 18
No Yes Schistosoma mansoni   29 22
No Yes Mnemiopsis leidyi Sea walnut 24 21
No Yes Thelohanellus kitauei   8 8
No Yes Acropora digitifera v1.0   26 22
No Yes Nematostella vectensis 1.0 Starlet sea anemone 38 30
No Yes Hydra vulgaris   36 27
No Yes Amphimedon queenslandica   50 34
No Yes Trichoplax adhaerens   25 19
No Yes Proterospongia sp. ATCC 50818   21 17
No Yes Monosiga brevicollis   15 11
No Yes Sphaeroforma arctica JP610   26 20
No Yes Capsaspora owczarzaki ATCC 30864   46 37
No Yes Conidiobolus coronatus NRRL28638 v1.0   11 8
No Yes Mortierella verticillata NRRL 6337   17 13
No Yes Phycomyces blakesleeanus   15 12
No Yes Rhizopus oryzae RA 99-880   18 14
No Yes Mucor circinelloides   11 8
No Yes Rhizomucor miehei CAU432   15 12
No Yes Malassezia globosa CBS 7966   6 4
No Yes Sporisorium reilianum 22   7 6
No Yes Ustilago maydis   5 5
No Yes Mixia osmundae IAM 14324 v1.0   6 5
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   6 5
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   6 5
No Yes Melampsora laricis-populina   5 4
No Yes Rhodotorula graminis WP1 v1.0   4 3
No Yes Sporobolomyces roseus IAM 13481   3 2
No Yes Microbotryum violaceum 22   8 7
No Yes Wallemia sebi v1.0   3 2
No Yes Sphaerobolus stellatus v1.0   7 6
No Yes Piloderma croceum F 1598 v1.0   7 6
No Yes Serpula lacrymans var. lacrymans S7.9   5 4
No Yes Coniophora puteana   7 6
No Yes Hydnomerulius pinastri v2.0   8 7
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   7 5
No Yes Pisolithus microcarpus 441 v1.0   6 5
No Yes Pisolithus tinctorius Marx 270 v1.0   6 5
No Yes Scleroderma citrinum Foug A v1.0   8 7
No Yes Coprinopsis cinerea okayama7 130 v3   7 6
No Yes Pleurotus ostreatus Oyster mushroom 6 5
No Yes Amanita thiersii Skay4041 v1.0   7 6
No Yes Amanita muscaria Koide v1.0 Fly agaric 7 6
No Yes Galerina marginata v1.0   8 7
No Yes Hebeloma cylindrosporum h7 v2.0   6 5
No Yes Laccaria bicolor S238N-H82   5 4
No Yes Agaricus bisporus var. bisporus   8 6
No Yes Schizophyllum commune   5 4
No Yes Stereum hirsutum FP-91666 SS1 v1.0   7 6
No Yes Heterobasidion annosum   7 6
No Yes Gloeophyllum trabeumv1.0   8 7
No Yes Punctularia strigosozonata v1.0   6 5
No Yes Sebacina vermifera MAFF 305830 v1.0   7 6
No Yes Fomitiporia mediterranea v1.0   7 6
No Yes Tulasnella calospora AL13/4D v1.0   6 5
No Yes Postia placenta   6 5
No Yes Wolfiporia cocos MD-104 SS10 v1.0   8 7
No Yes Fomitopsis pinicolav1.0   7 6
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   8 7
No Yes Phanerochaete chrysosporium RP-78 2.1   7 6
No Yes Dichomitus squalens   8 7
No Yes Trametes versicolor v1.0   8 7
No Yes Tremella mesenterica Witches' butter 5 4
No Yes Daldinia eschscholzii EC12 v1.0   5 4
No Yes Apiospora montagnei NRRL 25634 v1.0   5 4
No Yes Magnaporthe poae ATCC 64411 22   4 3
No Yes Magnaporthe grisea 70-15   5 4
No Yes Podospora anserina   5 4
No Yes Sporotrichum thermophile ATCC 42464   3 3
No Yes Thielavia terrestris NRRL 8126   3 3
No Yes Chaetomium globosum CBS 148.51   5 4
No Yes Neurospora tetrasperma   2 2
No Yes Neurospora discreta FGSC 8579   2 2
No Yes Neurospora crassa OR74A   5 4
No Yes Cryphonectria parasitica Chestnut blight fungus 3 3
No Yes Verticillium albo-atrum VaMs.102   5 4
No Yes Verticillium dahliae VdLs.17   5 4
No Yes Acremonium alcalophilumv 1.0   5 4
No Yes Glomerella graminicola 22   5 4
No Yes Fusarium graminearum   5 4
No Yes Nectria haematococca mpVI   5 4
No Yes Fusarium oxysporum f. sp. lycopersici 4286   5 4
No Yes Fusarium verticillioides 7600   4 3
No Yes Trichoderma asperellum CBS 433.97 v1.0   3 3
No Yes Trichoderma atroviride   3 3
No Yes Trichoderma citrinoviride v1.0   3 3
No Yes Trichoderma reesei 1.2   3 3
No Yes Trichoderma virens Gv29-8   3 3
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   5 4
No Yes Trichoderma harzianum CBS 226.95 v1.0   3 3
No Yes Amorphotheca resinae v1.0 Creosote fungus 4 3
No Yes Botrytis cinerea B05.10   3 2
No Yes Sclerotinia sclerotiorum   4 3
No Yes Blumeria graminis 22   5 4
No Yes Didymella exigua CBS 183.55 v1.0   5 4
No Yes Leptosphaeria maculans 22   5 4
No Yes Setosphaeria turcica v1.0   4 4
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   4 4
No Yes Cochliobolus victoriae FI3 v1.0   4 4
No Yes Cochliobolus carbonum 26-R-13 v1.0   4 4
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 4 4
No Yes Alternaria brassicicola   4 3
No Yes Cochliobolus lunatus m118 v2.0   6 5
No Yes Pyrenophora teres f. teres 22   4 3
No Yes Pyrenophora tritici-repentis   4 3
No Yes Stagonospora nodorum   4 3
No Yes Mycosphaerella graminicola IPO323   6 5
No Yes Zasmidium cellare ATCC 36951 v1.0   5 4
No Yes Dothistroma septosporum   5 4
No Yes Septoria musiva v1.0   5 4
No Yes Mycosphaerella fijiensis CIRAD86   5 4
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   4 3
No Yes Paracoccidioides brasiliensis Pb18   3 3
No Yes Coccidioides posadasii RMSCC 3488   5 4
No Yes Coccidioides immitis RS   9 6
No Yes Ajellomyces dermatitidis SLH14081   4 3
No Yes Histoplasma capsulatum class NAmI strain WU24   5 4
No Yes Microsporum canis CBS 113480   5 4
No Yes Trichophyton equinum CBS 127.97   4 3
No Yes Trichophyton verrucosum HKI 0517   5 4
No Yes Arthroderma benhamiae CBS 112371   5 4
No Yes Trichophyton tonsurans CBS 112818   5 4
No Yes Trichophyton rubrum CBS 118892   5 4
No Yes Uncinocarpus reesii 1704   4 3
No Yes Aspergillus zonatus v1.0   5 4
No Yes Penicillium chrysogenum Wisconsin 54-1255   5 4
No Yes Penicillium chrysogenum v1.0   5 4
No Yes Aspergillus acidus v1.0   5 4
No Yes Aspergillus fumigatus Af293   4 3
No Yes Aspergillus brasiliensis v1.0   5 4
No Yes Aspergillus nidulans FGSC A4   5 4
No Yes Aspergillus sydowii v1.0   5 4
No Yes Aspergillus versicolor v1.0   5 4
No Yes Aspergillus glaucus   5 4
No Yes Aspergillus carbonarius ITEM 5010   5 4
No Yes Neosartorya fischeri NRRL 181   4 3
No Yes Aspergillus terreus NIH2624   4 3
No Yes Aspergillus tubingensis v1.0   5 4
No Yes Aspergillus wentii v1.0   5 4
No Yes Aspergillus oryzae RIB40   5 4
No Yes Aspergillus niger 22   5 4
No Yes Aspergillus niger ATCC 1015   2 2
No Yes Aspergillus flavus NRRL3357   4 3
No Yes Aspergillus clavatus NRRL 1   5 4
No Yes Penicillium marneffei ATCC 18224   4 3
No Yes Tuber melanosporum Mel28 22   5 4
No Yes Tuber melanosporum Vittad Perigord truffle 5 4
No Yes Hansenula polymorpha v2.0   3 2
No Yes Dekkera bruxellensis CBS 2499 v2.0   3 2
No Yes Pichia membranifaciensv1.0   3 2
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   3 2
No Yes Candida dubliniensis CD36   3 2
No Yes Candida tropicalis MYA-3404   3 2
No Yes Candida parapsilosis   3 2
No Yes Candida albicans SC5314   3 2
No Yes Lodderomyces elongisporus NRRL YB-4239   3 2
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   4 3
No Yes Pichia stipitis CBS 6054   3 2
No Yes Candida guilliermondii ATCC 6260   3 2
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   3 2
No Yes Debaromyces hansenii   3 2
No Yes Wickerhamomyces anomalus   3 2
No Yes Pichia pastoris GS115   3 2
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   3 2
No Yes Yarrowia lipolytica CLIB122   3 2
No Yes Candida lusitaniae ATCC 42720   3 2
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   3 2
No Yes Vanderwaltozyma polyspora DSM 70294   3 2
No Yes Candida glabrata CBS138   3 2
No Yes Kluyveromyces thermotolerans CBS 6340   3 2
No Yes Lachancea kluyveri   3 2
No Yes Kluyveromyces waltii   3 2
No Yes Ashbya gossypii ATCC 10895   3 2
No Yes Zygosaccharomyces rouxii   4 3
No Yes Saccharomyces mikatae MIT   3 2
No Yes Saccharomyces paradoxus MIT   3 2
No Yes Saccharomyces cerevisiae 76 Baker's yeast 3 2
No Yes Saccharomyces bayanus MIT   3 2
No Yes Kluyveromyces lactis   3 2
No Yes Schizosaccharomyces cryophilus OY26 22   7 5
No Yes Schizosaccharomyces octosporus yFS286   7 5
No Yes Schizosaccharomyces japonicus yFS275   7 5
No Yes Schizosaccharomyces pombe Fission yeast 7 5
No Yes Catenaria anguillulae PL171 v1.0   6 5
No Yes Allomyces macrogynus ATCC 38327   20 18
No Yes Spizellomyces punctatus DAOM BR117   11 8
No Yes Dictyostelium discoideum   11 9
No Yes Dictyostelium purpureum   9 6
No Yes Entamoeba dispar 1.2   23 15
No Yes Entamoeba invadens 1.2   24 13
No Yes Entamoeba histolytica 1   23 14
No Yes Selaginella moellendorffii   9 9
No Yes Pinus taeda Loblolly pine 20 16
No Yes Picea abies Norway spruce 30 22
No Yes Eucalyptus grandis v201 Rose gum 80 39
No Yes Theobroma cacao B97-61/B2 v1 Cacao 427 103
No Yes Gossypium raimondii v221   553 146
No Yes Citrus clementina v165   138 54
No Yes Citrus sinensis v154 Sweet orange 147 70
No Yes Thellungiella halophila v173   385 102
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 183 65
No Yes Capsella rubella v183   425 106
No Yes Arabidopsis lyrata Lyrate rockcress 66 41
No Yes Arabidopsis thaliana 10 Thale cress 621 161
No Yes Carica papaya Papaya 89 32
No Yes Medicago truncatula Barrel medic 27 25
No Yes Phaseolus vulgaris v186 French bean 22 15
No Yes Glycine max v109 Soybean 33 24
No Yes Cucumis sativus v122 Cucumber 47 26
No Yes Fragaria vesca Wild strawberry 58 18
No Yes Malus domestica v196 Apple 48 34
No Yes Prunus persica v139 Peach 56 25
No Yes Linum usitatissimum v200 Flax 19 14
No Yes Manihot esculenta v147 Cassava 28 25
No Yes Populus trichocarpa v156 Black cottonwood 132 54
No Yes Vitis vinifera Wine grape 12 10
No Yes Mimulus guttatus v140 Spotted monkey flower 93 58
No Yes Solanum lycopersicum v.2.3 Tomato 47 27
No Yes Solanum tuberosum Potato 62 40
No Yes Actinidia chinensis Hongyang   128 58
No Yes Aquilegia coerulea v195   31 27
No Yes Triticum urartu 22   20 14
No Yes Triticum aestivum 22 Bread wheat 29 23
No Yes Aegilops tauschii 22   17 12
No Yes Brachypodium distachyon Stiff brome 17 13
No Yes Oryza barthii 22 African wild rice 36 26
No Yes Oryza meridionalis 22   35 27
No Yes Oryza glumaepatula 22   37 26
No Yes Oryza glaberrima African rice 25 17
No Yes Oryza punctata 22   35 24
No Yes Oryza nivara 22   45 28
No Yes Oryza brachyantha 22 Malo sina 19 16
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 46 35
No Yes Oryza sativa v193 Rice 45 35
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 18 15
No Yes Panicum virgatum v202 Switchgrass 60 43
No Yes Setaria italica v164 Foxtail millet 30 19
No Yes Zea mays subsp. mays Maize 23 15
No Yes Zea mays v181 Maize 24 16
No Yes Sorghum bicolor Sorghum 22 16
No Yes Musa balbisiana Balbis banana 17 14
No Yes Musa acuminata 22 Wild Malaysian banana 12 9
No Yes Amborella trichopoda 22   20 17
No Yes Physcomitrella patens   12 5
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Asterochloris sp. Cgr/DA1pho v1.0   1 1
No Yes Chlorella vulgaris   1 1
No Yes Volvox carteri f. nagariensis   2 2
No Yes Volvox carteri v199   2 2
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Ostreococcus sp. RCC809   1 1
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   1 1
No Yes Bathycoccus prasinos   1 1
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Cyanidioschyzon merolae strain 10D 22   1 1
No Yes Cyanidioschyzon merolae   1 1
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Thecamonas trahens ATCC 50062   8 5
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Cyanophora paradoxa   1 1
No Yes Leishmania mexicana 2.4   1 1
No Yes Leishmania major strain Friedlin   1 1
No Yes Leishmania infantum JPCM5 2.4   1 1
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Ectocarpus siliculosus   8 7
No Yes Aureococcus anophagefferens   2 2
No Yes Albugo laibachii 22   9 9
No Yes Pythium iwayamai DAOM BR242034 22   3 2
No Yes Pythium arrhenomanes ATCC 12531 22   5 4
No Yes Pythium ultimum v1.7-2   4 3
No Yes Pythium aphanidermatum DAOM BR444 22   4 3
No Yes Pythium irregulare DAOM BR486 22   5 4
No Yes Pythium vexans DAOM BR484 22   5 4
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 5 4
No Yes Phytophthora sojae 1.1   5 4
No Yes Phytophthora infestans T30-4   5 4
No Yes Phytophthora capsici   3 2
No Yes Hyaloperonospora arabidopsidis 22   5 5
No Yes Phaeodactylum tricornutumCCAP 1055/1   3 3
No Yes Fragilariopsis cylindrus   3 3
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Perkinsus marinus ATCC 50983   7 7
No Yes Paramecium tetraurelia   11 10
No Yes Tetrahymena thermophila SB210 1   11 9
No Yes Cryptosporidium hominis   1 1
No Yes Cryptosporidium muris   1 1
No Yes Cryptosporidium parvum Iowa II   2 2
No Yes Neospora caninum   3 2
No Yes Toxoplasma gondii VEG   3 2
No Yes Toxoplasma gondii ME49   3 2
No Yes Toxoplasma gondii GT1   3 2
No Yes Theileria parva   3 3
No Yes Theileria annulata   1 1
No Yes Plasmodium falciparum 3D7   3 2
No Yes Plasmodium vivax SaI-1 7.0   3 2
No Yes Plasmodium knowlesi strain H   2 2
No Yes Plasmodium yoelii ssp. yoelii 1   1 1
No Yes Plasmodium chabaudi   3 2
No Yes Plasmodium berghei ANKA   3 2
No Yes Symbiodinium minutum clade B1 v1.2   7 7
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   3 3
No Yes Guillardia theta CCMP2712 v1.0   2 2
No Yes Emiliania huxleyi CCMP1516   4 4
No Yes Clostridium thermocellum ATCC 27405   1 1
No Yes Providencia stuartii MRSN 2154   1 1
No Yes Thermoproteus neutrophilus V24Sta   1 1
No Yes Halopiger xanaduensis SH-6   1 1
No Yes Halogeometricum borinquense DSM 11551   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 117 92
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 95 69
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 36 27
No Yes Ascaris suum Victoria/Ghent Pig roundworm 34 25
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 85 59
No Yes Cryptococcus neoformans var. grubii H99   5 3
No Yes Cryptococcus neoformans B-3501A   5 4
No Yes Cryptococcus neoformans JEC21   7 5
No Yes Paracoccidioides brasiliensis Pb01   2 2
No Yes Paracoccidioides brasiliensis Pb03   4 3
No Yes Coccidioides posadasii str. Silveira   5 4
No Yes Coccidioides immitis RMSCC 3703   5 4
No Yes Coccidioides immitis RMSCC 2394   5 4
No Yes Coccidioides immitis H538.4   3 3
No Yes Ajellomyces dermatitidis ER-3   5 4
No Yes Histoplasma capsulatum H143   4 3
No Yes Histoplasma capsulatum H88   5 4
No Yes Histoplasma capsulatum G186AR   5 4
No Yes Aspergillus fumigatus A1163   5 4
No Yes Candida albicans WO-1   3 2
No Yes Saccharomyces cerevisiae UC5   2 1
No Yes Saccharomyces cerevisiae PW5   3 2
No Yes Saccharomyces cerevisiae CLIB324   3 2
No Yes Saccharomyces cerevisiae CBS7960   1 1
No Yes Saccharomyces cerevisiae YJM269   3 2
No Yes Saccharomyces cerevisiae T7   3 2
No Yes Saccharomyces cerevisiae FostersB   3 2
No Yes Saccharomyces cerevisiae FostersO   1 1
No Yes Saccharomyces cerevisiae VL3   2 1
No Yes Saccharomyces cerevisiae Vin13   3 2
No Yes Saccharomyces cerevisiae LalvinQA23   2 1
No Yes Saccharomyces cerevisiae AWRI796   3 2
No Yes Saccharomyces cerevisiae Sigma1278b   3 2
No Yes Saccharomyces cerevisiae W303   3 2
No Yes Saccharomyces cerevisiae JAY291   3 2
No Yes Saccharomyces cerevisiae AWRI1631   3 2
No Yes Saccharomyces cerevisiae M22   1 1
No Yes Saccharomyces cerevisiae T73   1 1
No Yes Saccharomyces cerevisiae CLIB215   1 1
No Yes Saccharomyces cerevisiae Y10   3 2
No Yes Saccharomyces cerevisiae YJM789   3 2
No Yes Saccharomyces cerevisiae YJM789   3 2
No Yes Saccharomyces cerevisiae RM11-1a   3 2
No Yes Saccharomyces cerevisiae RM11-1a   3 2
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 3 2
No Yes Schizosaccharomyces pombe 972h-   7 5
No Yes Batrachochytrium dendrobatidis JEL423   11 9
No Yes Batrachochytrium dendrobatidis JAM81   8 6
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 340 80
No Yes Hordeum vulgare 22 Domesticated barley 24 19
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 34 25
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Neospora caninum Nc-Liverpool 6.2   3 2
No Yes Plasmodium falciparum HB3   3 2
No Yes Plasmodium falciparum Dd2   2 1
No Yes Methanolobus psychrophilus R15   1 1
No Yes Natrinema pellirubrum DSM 15624   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 328 270
No Yes Homo sapiens (NCBI version) Human 147 112
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 78 60
No Yes Heliconius numata (Incomplete)   2 2
No Yes Loa loa v3.3 (Request) Eye worm 36 30
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 31 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 31 23
No Yes Moniliophthora perniciosa FA553 (Genome survey)   3 2
No Yes Encephalitozoon intestinalis (endoparasite)   2 2
No Yes Encephalitozoon cuniculi (endoparasite)   2 2
No Yes Picea sitchensis (Incomplete) Sitka spruce 8 5
No Yes Lotus japonicus (Early assembly)   16 12
No Yes Malus x domestica (Duplicate) Apple 48 34
No Yes Ricinus communis (Early assembly) Castor bean 22 17
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   53 35
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 47 27
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 47 27
No Yes Phoenix dactylifera (Early draft) Date palm 12 10
No Yes Homo sapiens 69_37 Human 83 64
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 63 49
No Yes Gorilla gorilla 69_3.1 Western gorilla 70 54
No Yes Pongo abelii 69_2 Sumatran orangutan 74 57
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 72 56
No Yes Macaca mulatta 69_1 Rhesus monkey 73 57
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 75 57
No Yes Otolemur garnettii 69_3 Small-eared galago 75 57
No Yes Microcebus murinus 69_1 Gray mouse lemur 56 45
No Yes Rattus norvegicus 69_3.4 Norway rat 75 59
No Yes Mus musculus 69_38 House mouse 77 59
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 60 47
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 68 54
No Yes Cavia porcellus 69_3 Domestic guinea pig 99 80
No Yes Oryctolagus cuniculus 69_2 Rabbit 70 52
No Yes Ochotona princeps 69 American pika 60 48
No Yes Tupaia belangeri 69 Northern tree shrew 50 42
No Yes Sus scrofa 69_10.2 Pig 66 53
No Yes Bos taurus 69_3.1 Cattle 76 58
No Yes Vicugna pacos 69_1 Alpaca 39 30
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 67 52
No Yes Mustela putorius furo 69_1.0 Domestic ferret 74 58
No Yes Ailuropoda melanoleuca 69_1 Giant panda 74 57
No Yes Canis familiaris 69_3.1 Dog 77 58
No Yes Felis catus 69 Domestic cat 40 35
No Yes Equus caballus 69_2 Horse 73 57
No Yes Myotis lucifugus 69_2.0 Little brown bat 62 50
No Yes Pteropus vampyrus 69_1 Large flying fox 63 52
No Yes Sorex araneus 69_1 European shrew 48 41
No Yes Erinaceus europaeus 69 Western European hedgehog 48 38
No Yes Procavia capensis 69_1 Cape rock hyrax 62 51
No Yes Loxodonta africana 69_3 African savanna elephant 73 58
No Yes Echinops telfairi 69 Small Madagascar hedgehog 53 45
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 37 29
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 38 29
No Yes Macropus eugenii 69_1.0 Tammar wallaby 60 49
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 62 52
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 69 57
No Yes Ornithorhynchus anatinus 69_5 Platypus 60 50
No Yes Petromyzon marinus 69_7.0 Sea lamprey 32 27
No Yes Meleagris gallopavo 69_2 Turkey 53 40
No Yes Gallus gallus 69_2 Chicken 59 45
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 61 45
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 63 50
No Yes Anolis carolinensis 69_2.0 Green anole 64 50
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 66 51
No Yes Latimeria chalumnae 69_1 Coelacanth 71 56
No Yes Gadus morhua 69_1 Atlantic cod 88 67
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 91 72
No Yes Takifugu rubripes 69_4 Torafugu 94 74
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 90 69
No Yes Oryzias latipes 69_1 Japanese medaka 83 66
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 98 76
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 102 80
No Yes Danio rerio 69_9 Zebrafish 103 82
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 26 19
No Yes Ciona intestinalis 69 Vase tunicate 21 17
No Yes Drosophila melanogaster 69_5 Fruit fly 32 24
No Yes Caenorhabditis elegans 69_215 Roundworm 45 33
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 3 2
No Yes Arabidopsis thaliana 10 Thale cress 599 152
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   1 1
No Yes Bath Hot Springs, planktonic community (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Core Eukaryotic Genes 458 (CEGMA)   5 5
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   2 2
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   66383 48438
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   142 102
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   3819 2595
No Yes Uniprot 2018_03 genome   44568 31039
No Yes Global Ocean Sampling Expedition (GOS)   15 15
No Yes NCBI plasmid sequences (Plasmids)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   8 8
No Yes Protein Data Bank (all PDB sequenc)   60 59
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   135 135
No Yes TargetDB (Targets)   169 130

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]