SUPERFAMILY 1.75 HMM library and genome assignments server

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FYVE/PHD zinc finger superfamily domain assignments
in
Methanohalophilus mahii DSM 5219


No domain assignments for these genomes.


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Select to display   Genome       Domains   Proteins
No Yes ALL   371480 371480
No Yes Homo sapiens 76_38 Human 669 557
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 164 128
No Yes Gorilla gorilla 76_3.1 Western gorilla 242 180
No Yes Pongo abelii 76_2 Sumatran orangutan 164 126
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 176 139
No Yes Papio anubis 76 Olive baboon 185 145
No Yes Macaca mulatta 76_1 Rhesus monkey 267 213
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 371 296
No Yes Otolemur garnettii 76_3 Small-eared galago 163 130
No Yes Microcebus murinus 76_1 Gray mouse lemur 128 105
No Yes Rattus norvegicus 76_5.0 Norway rat 170 141
No Yes Mus musculus 76_38 House mouse 456 369
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 121 101
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 154 120
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 152 129
No Yes Cavia porcellus 76_3 Domestic guinea pig 159 127
No Yes Oryctolagus cuniculus 76_2 Rabbit 169 132
No Yes Ochotona princeps 76 American pika 121 99
No Yes Tupaia belangeri 76 Northern tree shrew 110 91
No Yes Sus scrofa 76_10.2 Pig 181 149
No Yes Bos taurus 76_3.1 Cattle 175 132
No Yes Ovis aries 76_3.1 Sheep 195 153
No Yes Vicugna pacos 76_1 Alpaca 87 72
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 147 118
No Yes Mustela putorius furo 76_1.0 Domestic ferret 166 129
No Yes Ailuropoda melanoleuca 76_1 Giant panda 174 135
No Yes Canis familiaris 76_3.1 Dog 235 179
No Yes Felis catus 76_6.2 Domestic cat 167 133
No Yes Equus caballus 76_2 Horse 194 147
No Yes Myotis lucifugus 76_2.0 Little brown bat 173 134
No Yes Pteropus vampyrus 76_1 Large flying fox 154 124
No Yes Sorex araneus 76_1 European shrew 100 81
No Yes Erinaceus europaeus 76 Western European hedgehog 99 85
No Yes Procavia capensis 76_1 Cape rock hyrax 143 113
No Yes Loxodonta africana 76_3 African savanna elephant 244 193
No Yes Echinops telfairi 76 Small Madagascar hedgehog 107 90
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 191 160
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 91 75
No Yes Macropus eugenii 76_1.0 Tammar wallaby 120 99
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 199 156
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 167 131
No Yes Ornithorhynchus anatinus 76_5 Platypus 128 100
No Yes Saccoglossus kowalevskii v3.0   291 229
No Yes Petromyzon marinus 76_7.0 Sea lamprey 81 62
No Yes Meleagris gallopavo 76_2 Turkey 167 133
No Yes Gallus gallus 76_4 Chicken 189 147
No Yes Anas platyrhynchos 76_1.0 Mallard 139 112
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 170 128
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 145 117
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 156 126
No Yes Anolis carolinensis 76_2.0 Green anole 150 116
No Yes Xenopus laevis African clawed frog 202 178
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 175 140
No Yes Latimeria chalumnae 76_1 Coelacanth 185 142
No Yes Lepisosteus oculatus 76 Spotted gar 215 167
No Yes Gadus morhua 76_1 Atlantic cod 180 140
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 240 185
No Yes Takifugu rubripes 76_4 Torafugu 607 471
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 228 177
No Yes Oryzias latipes 76_1 Japanese medaka 206 159
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 201 149
No Yes Poecilia formosa 76 Amazon molly 210 154
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 278 219
No Yes Astyanax mexicanus 76 Mexican tetra 200 158
No Yes Danio rerio 76_9 Zebrafish 363 276
No Yes Oikopleura dioica   56 51
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 115 84
No Yes Ciona intestinalis 76 Vase tunicate 68 59
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 185 161
No Yes Adineta vaga   245 190
No Yes Octopus bimaculoides 280   172 147
No Yes Crassostrea gigas 22 Pacific oyster 137 111
No Yes Lottia gigantea Owl limpet 103 82
No Yes Helobdella robusta   209 195
No Yes Capitella sp. I   118 99
No Yes Danaus plexippus OGS1.0 Monarch butterfly 91 73
No Yes Heliconius melpomene Postman butterfly 65 53
No Yes Bombyx mori Domestic silkworm 72 61
No Yes Nasonia vitripennis Jewel wasp 70 50
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 132 100
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 81 65
No Yes Linepithema humile v1.1 Argentine ant 92 72
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 80 67
No Yes Solenopsis invicta v.2.2.3 Red fire ant 72 60
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 86 66
No Yes Atta cephalotes v1.1   86 65
No Yes Camponotus floridanus v3.3 Florida carpenter ant 92 71
No Yes Lucilia cuprina Australian sheep blowfly 106 90
No Yes Drosophila grimshawi 1.3   89 69
No Yes Drosophila willistoni 1.3   99 78
No Yes Drosophila pseudoobscura 2.13   83 64
No Yes Drosophila persimilis 1.3   78 63
No Yes Drosophila suzukii   83 65
No Yes Drosophila yakuba 1.3   79 62
No Yes Drosophila simulans 1.3   64 58
No Yes Drosophila sechellia 1.3   82 65
No Yes Drosophila melanogaster 76_5 Fruit fly 204 157
No Yes Drosophila erecta 1.3   84 65
No Yes Drosophila ananassae 1.3   85 67
No Yes Drosophila virilis 1.2   83 66
No Yes Drosophila mojavensis 1.3   84 65
No Yes Megaselia scalaris 22   31 23
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 107 91
No Yes Culex pipiens quinquefasciatus Southern house mosquito 118 101
No Yes Anopheles darlingi 22 American malaria mosquito 59 46
No Yes Anopheles gambiae 49_3j African malaria mosquito 74 64
No Yes Tribolium castaneum 3.0 Red flour beetle 97 78
No Yes Pediculus humanus corporis (Early assembly) Human body louse 82 62
No Yes Acyrthosiphon pisum Pea aphid 88 73
No Yes Rhodnius prolixus 22   82 73
No Yes Daphnia pulex Common water flea 118 98
No Yes Strigamia maritima 22   94 74
No Yes Sarcoptes scabiei   54 42
No Yes Tetranychus urticae Two-spotted spider mite 88 66
No Yes Ixodes scapularis (Preliminary) Black-legged tick 74 59
No Yes Pristionchus pacificus   53 47
No Yes Meloidogyne incognita Southern root-knot nematode 68 52
No Yes Meloidogyne hapla   32 24
No Yes Onchocerca volvulus 22   62 49
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 113 84
No Yes Caenorhabditis japonica   61 53
No Yes Caenorhabditis brenneri   103 85
No Yes Caenorhabditis remanei   83 74
No Yes Caenorhabditis elegans 76_235 Roundworm 122 104
No Yes Caenorhabditis briggsae 2   67 57
No Yes Trichinella spiralis 22   52 47
No Yes Hymenolepis microstoma   83 63
No Yes Echinococcus multilocularis   82 64
No Yes Echinococcus granulosus   78 60
No Yes Taenia solium Pork tapeworm 71 57
No Yes Schistosoma mansoni   101 74
No Yes Mnemiopsis leidyi Sea walnut 154 134
No Yes Thelohanellus kitauei   22 20
No Yes Acropora digitifera v1.0   92 81
No Yes Nematostella vectensis 1.0 Starlet sea anemone 115 97
No Yes Hydra vulgaris   98 73
No Yes Amphimedon queenslandica   162 153
No Yes Trichoplax adhaerens   67 55
No Yes Proterospongia sp. ATCC 50818   67 57
No Yes Monosiga brevicollis   51 47
No Yes Sphaeroforma arctica JP610   69 58
No Yes Capsaspora owczarzaki ATCC 30864   76 67
No Yes Conidiobolus coronatus NRRL28638 v1.0   36 31
No Yes Mortierella verticillata NRRL 6337   49 42
No Yes Phycomyces blakesleeanus   58 52
No Yes Rhizopus oryzae RA 99-880   48 41
No Yes Mucor circinelloides   50 47
No Yes Rhizomucor miehei CAU432   44 37
No Yes Malassezia globosa CBS 7966   46 40
No Yes Sporisorium reilianum 22   29 24
No Yes Ustilago maydis   27 22
No Yes Mixia osmundae IAM 14324 v1.0   23 21
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   25 23
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   21 21
No Yes Melampsora laricis-populina   21 21
No Yes Rhodotorula graminis WP1 v1.0   23 22
No Yes Sporobolomyces roseus IAM 13481   15 14
No Yes Microbotryum violaceum 22   27 24
No Yes Wallemia sebi v1.0   18 15
No Yes Sphaerobolus stellatus v1.0   34 30
No Yes Piloderma croceum F 1598 v1.0   34 30
No Yes Serpula lacrymans var. lacrymans S7.9   21 19
No Yes Coniophora puteana   33 30
No Yes Hydnomerulius pinastri v2.0   32 29
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   32 29
No Yes Pisolithus microcarpus 441 v1.0   41 38
No Yes Pisolithus tinctorius Marx 270 v1.0   31 26
No Yes Scleroderma citrinum Foug A v1.0   33 29
No Yes Coprinopsis cinerea okayama7 130 v3   32 29
No Yes Pleurotus ostreatus Oyster mushroom 28 27
No Yes Amanita thiersii Skay4041 v1.0   30 26
No Yes Amanita muscaria Koide v1.0 Fly agaric 29 25
No Yes Galerina marginata v1.0   55 52
No Yes Hebeloma cylindrosporum h7 v2.0   48 45
No Yes Laccaria bicolor S238N-H82   50 48
No Yes Agaricus bisporus var. bisporus   29 24
No Yes Schizophyllum commune   31 28
No Yes Stereum hirsutum FP-91666 SS1 v1.0   35 32
No Yes Heterobasidion annosum   24 22
No Yes Gloeophyllum trabeumv1.0   30 27
No Yes Punctularia strigosozonata v1.0   25 24
No Yes Sebacina vermifera MAFF 305830 v1.0   32 30
No Yes Fomitiporia mediterranea v1.0   24 21
No Yes Tulasnella calospora AL13/4D v1.0   31 28
No Yes Postia placenta   31 29
No Yes Wolfiporia cocos MD-104 SS10 v1.0   29 25
No Yes Fomitopsis pinicolav1.0   36 32
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   37 33
No Yes Phanerochaete chrysosporium RP-78 2.1   21 19
No Yes Dichomitus squalens   28 25
No Yes Trametes versicolor v1.0   31 27
No Yes Tremella mesenterica Witches' butter 26 22
No Yes Daldinia eschscholzii EC12 v1.0   31 27
No Yes Apiospora montagnei NRRL 25634 v1.0   30 26
No Yes Magnaporthe poae ATCC 64411 22   25 21
No Yes Magnaporthe grisea 70-15   27 23
No Yes Podospora anserina   29 25
No Yes Sporotrichum thermophile ATCC 42464   28 24
No Yes Thielavia terrestris NRRL 8126   29 26
No Yes Chaetomium globosum CBS 148.51   24 21
No Yes Neurospora tetrasperma   27 22
No Yes Neurospora discreta FGSC 8579   26 21
No Yes Neurospora crassa OR74A   30 26
No Yes Cryphonectria parasitica Chestnut blight fungus 28 25
No Yes Verticillium albo-atrum VaMs.102   26 22
No Yes Verticillium dahliae VdLs.17   24 21
No Yes Acremonium alcalophilumv 1.0   26 22
No Yes Glomerella graminicola 22   30 26
No Yes Fusarium graminearum   25 23
No Yes Nectria haematococca mpVI   27 24
No Yes Fusarium oxysporum f. sp. lycopersici 4286   27 25
No Yes Fusarium verticillioides 7600   26 23
No Yes Trichoderma asperellum CBS 433.97 v1.0   32 28
No Yes Trichoderma atroviride   30 27
No Yes Trichoderma citrinoviride v1.0   29 25
No Yes Trichoderma reesei 1.2   26 22
No Yes Trichoderma virens Gv29-8   28 26
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   28 25
No Yes Trichoderma harzianum CBS 226.95 v1.0   34 30
No Yes Amorphotheca resinae v1.0 Creosote fungus 31 27
No Yes Botrytis cinerea B05.10   27 23
No Yes Sclerotinia sclerotiorum   27 23
No Yes Blumeria graminis 22   25 21
No Yes Didymella exigua CBS 183.55 v1.0   28 24
No Yes Leptosphaeria maculans 22   33 29
No Yes Setosphaeria turcica v1.0   35 29
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   35 31
No Yes Cochliobolus victoriae FI3 v1.0   34 29
No Yes Cochliobolus carbonum 26-R-13 v1.0   33 29
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 26 22
No Yes Alternaria brassicicola   29 25
No Yes Cochliobolus lunatus m118 v2.0   31 27
No Yes Pyrenophora teres f. teres 22   37 31
No Yes Pyrenophora tritici-repentis   33 28
No Yes Stagonospora nodorum   29 27
No Yes Mycosphaerella graminicola IPO323   32 28
No Yes Zasmidium cellare ATCC 36951 v1.0   40 36
No Yes Dothistroma septosporum   44 40
No Yes Septoria musiva v1.0   40 36
No Yes Mycosphaerella fijiensis CIRAD86   29 26
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   36 32
No Yes Paracoccidioides brasiliensis Pb18   25 21
No Yes Coccidioides posadasii RMSCC 3488   28 24
No Yes Coccidioides immitis RS   28 24
No Yes Ajellomyces dermatitidis SLH14081   28 25
No Yes Histoplasma capsulatum class NAmI strain WU24   23 19
No Yes Microsporum canis CBS 113480   25 22
No Yes Trichophyton equinum CBS 127.97   23 20
No Yes Trichophyton verrucosum HKI 0517   23 20
No Yes Arthroderma benhamiae CBS 112371   22 19
No Yes Trichophyton tonsurans CBS 112818   26 23
No Yes Trichophyton rubrum CBS 118892   28 24
No Yes Uncinocarpus reesii 1704   23 20
No Yes Aspergillus zonatus v1.0   28 24
No Yes Penicillium chrysogenum Wisconsin 54-1255   31 27
No Yes Penicillium chrysogenum v1.0   31 27
No Yes Aspergillus acidus v1.0   30 26
No Yes Aspergillus fumigatus Af293   29 25
No Yes Aspergillus brasiliensis v1.0   27 24
No Yes Aspergillus nidulans FGSC A4   29 26
No Yes Aspergillus sydowii v1.0   28 24
No Yes Aspergillus versicolor v1.0   29 25
No Yes Aspergillus glaucus   32 28
No Yes Aspergillus carbonarius ITEM 5010   31 27
No Yes Neosartorya fischeri NRRL 181   29 25
No Yes Aspergillus terreus NIH2624   29 25
No Yes Aspergillus tubingensis v1.0   26 23
No Yes Aspergillus wentii v1.0   31 27
No Yes Aspergillus oryzae RIB40   23 20
No Yes Aspergillus niger 22   28 25
No Yes Aspergillus niger ATCC 1015   22 18
No Yes Aspergillus flavus NRRL3357   29 25
No Yes Aspergillus clavatus NRRL 1   29 25
No Yes Penicillium marneffei ATCC 18224   34 30
No Yes Tuber melanosporum Mel28 22   24 20
No Yes Tuber melanosporum Vittad Perigord truffle 24 20
No Yes Hansenula polymorpha v2.0   21 18
No Yes Dekkera bruxellensis CBS 2499 v2.0   21 19
No Yes Pichia membranifaciensv1.0   24 21
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   24 21
No Yes Candida dubliniensis CD36   23 20
No Yes Candida tropicalis MYA-3404   23 20
No Yes Candida parapsilosis   23 20
No Yes Candida albicans SC5314   23 20
No Yes Lodderomyces elongisporus NRRL YB-4239   23 20
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   22 20
No Yes Pichia stipitis CBS 6054   24 21
No Yes Candida guilliermondii ATCC 6260   23 20
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   22 19
No Yes Debaromyces hansenii   23 20
No Yes Wickerhamomyces anomalus   24 22
No Yes Pichia pastoris GS115   22 19
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   11 11
No Yes Yarrowia lipolytica CLIB122   24 21
No Yes Candida lusitaniae ATCC 42720   23 21
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   21 19
No Yes Vanderwaltozyma polyspora DSM 70294   22 20
No Yes Candida glabrata CBS138   18 16
No Yes Kluyveromyces thermotolerans CBS 6340   21 19
No Yes Lachancea kluyveri   21 18
No Yes Kluyveromyces waltii   21 18
No Yes Ashbya gossypii ATCC 10895   24 20
No Yes Zygosaccharomyces rouxii   23 20
No Yes Saccharomyces mikatae MIT   22 20
No Yes Saccharomyces paradoxus MIT   25 22
No Yes Saccharomyces cerevisiae 76 Baker's yeast 24 21
No Yes Saccharomyces bayanus MIT   21 18
No Yes Kluyveromyces lactis   22 19
No Yes Schizosaccharomyces cryophilus OY26 22   29 23
No Yes Schizosaccharomyces octosporus yFS286   30 24
No Yes Schizosaccharomyces japonicus yFS275   30 24
No Yes Schizosaccharomyces pombe Fission yeast 31 25
No Yes Catenaria anguillulae PL171 v1.0   31 28
No Yes Allomyces macrogynus ATCC 38327   59 45
No Yes Spizellomyces punctatus DAOM BR117   34 28
No Yes Dictyostelium discoideum   44 36
No Yes Dictyostelium purpureum   40 33
No Yes Entamoeba dispar 1.2   19 18
No Yes Entamoeba invadens 1.2   31 30
No Yes Entamoeba histolytica 1   19 18
No Yes Selaginella moellendorffii   156 145
No Yes Pinus taeda Loblolly pine 92 80
No Yes Picea abies Norway spruce 68 61
No Yes Eucalyptus grandis v201 Rose gum 160 138
No Yes Theobroma cacao B97-61/B2 v1 Cacao 110 95
No Yes Gossypium raimondii v221   481 390
No Yes Citrus clementina v165   168 139
No Yes Citrus sinensis v154 Sweet orange 266 217
No Yes Thellungiella halophila v173   131 111
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 171 141
No Yes Capsella rubella v183   139 118
No Yes Arabidopsis lyrata Lyrate rockcress 121 103
No Yes Arabidopsis thaliana 10 Thale cress 159 137
No Yes Carica papaya Papaya 88 78
No Yes Medicago truncatula Barrel medic 237 195
No Yes Phaseolus vulgaris v186 French bean 160 139
No Yes Glycine max v109 Soybean 258 224
No Yes Cucumis sativus v122 Cucumber 135 121
No Yes Fragaria vesca Wild strawberry 116 100
No Yes Malus domestica v196 Apple 195 168
No Yes Prunus persica v139 Peach 106 91
No Yes Linum usitatissimum v200 Flax 190 161
No Yes Manihot esculenta v147 Cassava 160 137
No Yes Populus trichocarpa v156 Black cottonwood 176 148
No Yes Vitis vinifera Wine grape 96 82
No Yes Mimulus guttatus v140 Spotted monkey flower 120 108
No Yes Solanum lycopersicum v.2.3 Tomato 135 116
No Yes Solanum tuberosum Potato 136 126
No Yes Actinidia chinensis Hongyang   135 120
No Yes Aquilegia coerulea v195   214 183
No Yes Triticum urartu 22   99 86
No Yes Triticum aestivum 22 Bread wheat 327 290
No Yes Aegilops tauschii 22   104 92
No Yes Brachypodium distachyon Stiff brome 161 140
No Yes Oryza barthii 22 African wild rice 164 144
No Yes Oryza meridionalis 22   181 152
No Yes Oryza glumaepatula 22   204 178
No Yes Oryza glaberrima African rice 112 100
No Yes Oryza punctata 22   198 174
No Yes Oryza nivara 22   183 160
No Yes Oryza brachyantha 22 Malo sina 123 104
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 152 136
No Yes Oryza sativa v193 Rice 152 136
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 173 149
No Yes Panicum virgatum v202 Switchgrass 243 214
No Yes Setaria italica v164 Foxtail millet 165 141
No Yes Zea mays subsp. mays Maize 236 210
No Yes Zea mays v181 Maize 253 226
No Yes Sorghum bicolor Sorghum 123 111
No Yes Musa balbisiana Balbis banana 128 116
No Yes Musa acuminata 22 Wild Malaysian banana 167 147
No Yes Amborella trichopoda 22   101 88
No Yes Physcomitrella patens   105 90
No Yes Coccomyxa subellipsoidea sp. C-169 v2   37 31
No Yes Asterochloris sp. Cgr/DA1pho v1.0   25 20
No Yes Chlorella variabilis sp. NC64A   34 32
No Yes Chlorella vulgaris   39 33
No Yes Volvox carteri f. nagariensis   30 30
No Yes Volvox carteri v199   22 20
No Yes Chlamydomonas reinhardtii 4.0   52 49
No Yes Ostreococcus sp. RCC809   21 20
No Yes Ostreococcus lucimarinus CCE9901   22 20
No Yes Ostreococcus tauri   18 15
No Yes Bathycoccus prasinos   31 27
No Yes Micromonas sp. RCC299   32 28
No Yes Micromonas pusilla CCMP1545 v3.0   39 32
No Yes Cyanidioschyzon merolae strain 10D 22   16 15
No Yes Cyanidioschyzon merolae   16 15
No Yes Porphyridium purpureum 02_2012   26 20
No Yes Thecamonas trahens ATCC 50062   58 49
No Yes Bigelowiella natans CCMP2755 22   69 65
No Yes Giardia lamblia 2.3   5 5
No Yes Cyanophora paradoxa   30 26
No Yes Leishmania mexicana 2.4   28 26
No Yes Leishmania major strain Friedlin   26 24
No Yes Leishmania infantum JPCM5 2.4   25 23
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   28 26
No Yes Trypanosoma vivax   22 21
No Yes Trypanosoma cruzi strain CL Brener   29 28
No Yes Trypanosoma congolense 2.4   26 25
No Yes Trypanosoma brucei gambiense v4.1   31 30
No Yes Trypanosoma brucei TREU927 v4.1   31 30
No Yes Ectocarpus siliculosus   98 80
No Yes Aureococcus anophagefferens   49 44
No Yes Albugo laibachii 22   214 194
No Yes Pythium iwayamai DAOM BR242034 22   194 179
No Yes Pythium arrhenomanes ATCC 12531 22   196 177
No Yes Pythium ultimum v1.7-2   232 219
No Yes Pythium aphanidermatum DAOM BR444 22   212 193
No Yes Pythium irregulare DAOM BR486 22   241 221
No Yes Pythium vexans DAOM BR484 22   230 204
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 239 228
No Yes Phytophthora sojae 1.1   247 234
No Yes Phytophthora infestans T30-4   254 237
No Yes Phytophthora capsici   176 169
No Yes Hyaloperonospora arabidopsidis 22   184 171
No Yes Phaeodactylum tricornutumCCAP 1055/1   33 31
No Yes Fragilariopsis cylindrus   63 59
No Yes Thalassiosira pseudonana CCMP1335   43 36
No Yes Perkinsus marinus ATCC 50983   49 43
No Yes Paramecium tetraurelia   178 157
No Yes Tetrahymena thermophila SB210 1   48 41
No Yes Ichthyophthirius multifiliis strain G5   14 14
No Yes Cryptosporidium hominis   16 13
No Yes Cryptosporidium muris   20 15
No Yes Cryptosporidium parvum Iowa II   22 14
No Yes Neospora caninum   27 21
No Yes Toxoplasma gondii VEG   25 18
No Yes Toxoplasma gondii ME49   26 18
No Yes Toxoplasma gondii GT1   25 18
No Yes Babesia bovis T2Bo   22 16
No Yes Theileria parva   15 11
No Yes Theileria annulata   14 10
No Yes Plasmodium falciparum 3D7   15 10
No Yes Plasmodium vivax SaI-1 7.0   14 9
No Yes Plasmodium knowlesi strain H   16 11
No Yes Plasmodium yoelii ssp. yoelii 1   11 8
No Yes Plasmodium chabaudi   14 9
No Yes Plasmodium berghei ANKA   13 8
No Yes Symbiodinium minutum clade B1 v1.2   42 38
No Yes Naegleria gruberi   16 12
No Yes Trichomonas vaginalis   38 29
No Yes Guillardia theta CCMP2712 v1.0   48 41
No Yes Emiliania huxleyi CCMP1516   110 99
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Selenomonas ruminantium subsp. lactilytica TAM6421   1 1
No Yes Thermaerobacter marianensis DSM 12885   1 1
No Yes butyrate-producing bacterium SM4/1   1 1
No Yes Thermodesulfatator indicus DSM 15286   1 1
No Yes Thermodesulfobacterium sp. OPB45   1 1
No Yes Candidatus Nitrospira defluvii   1 1
No Yes Myxococcus xanthus DK 1622   1 1
No Yes Myxococcus fulvus HW-1   1 1
No Yes Thermogladius cellulolyticus 1633   1 1
No Yes Ignisphaera aggregans DSM 17230   1 1
No Yes Ignicoccus hospitalis KIN4/I   1 1
No Yes Desulfurococcus fermentans DSM 16532   1 1
No Yes Sulfolobus acidocaldarius DSM 639   1 1
No Yes Thermofilum pendens Hrk 5   1 1
No Yes Pyrobaculum sp. 1860   1 1
No Yes Pyrobaculum calidifontis JCM 11548   1 1
No Yes Pyrobaculum arsenaticum DSM 13514   1 1
No Yes Thermoproteus uzoniensis 768-20   1 1
No Yes Thermoproteus tenax Kra 1   2 2
No Yes Methanocella arvoryzae MRE50   2 2
No Yes Methanocella paludicola SANAE   2 2
No Yes Methanosarcina acetivorans C2A   1 1
No Yes Methanosarcina barkeri str. Fusaro   1 1
No Yes Methanospirillum hungatei JF-1   1 1
No Yes Archaeoglobus fulgidus DSM 4304   1 1
No Yes Thermococcus sp. 4557   1 1
No Yes Thermococcus kodakarensis KOD1   1 1
No Yes Thermococcus gammatolerans EJ3   1 1
No Yes Haloterrigena turkmenica DSM 5511   1 1
No Yes Halomicrobium mukohataei DSM 12286   1 1
No Yes Methanotorris igneus Kol 5   1 1
No Yes Methanosphaera stadtmanae DSM 3091   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 268 216
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 143 111
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 92 79
No Yes Ascaris suum Victoria/Ghent Pig roundworm 56 46
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 94 78
No Yes Cryptococcus neoformans var. grubii H99   29 25
No Yes Cryptococcus neoformans B-3501A   32 28
No Yes Cryptococcus neoformans JEC21   34 30
No Yes Paracoccidioides brasiliensis Pb01   25 22
No Yes Paracoccidioides brasiliensis Pb03   27 23
No Yes Coccidioides posadasii str. Silveira   26 23
No Yes Coccidioides immitis RMSCC 3703   24 22
No Yes Coccidioides immitis RMSCC 2394   26 23
No Yes Coccidioides immitis H538.4   20 17
No Yes Ajellomyces dermatitidis ER-3   28 24
No Yes Histoplasma capsulatum H143   22 20
No Yes Histoplasma capsulatum H88   26 24
No Yes Histoplasma capsulatum G186AR   25 23
No Yes Aspergillus fumigatus A1163   30 26
No Yes Candida albicans WO-1   23 20
No Yes Saccharomyces cerevisiae UC5   21 17
No Yes Saccharomyces cerevisiae PW5   19 17
No Yes Saccharomyces cerevisiae FL100   14 13
No Yes Saccharomyces cerevisiae CLIB382   1 1
No Yes Saccharomyces cerevisiae CLIB324   5 5
No Yes Saccharomyces cerevisiae CBS7960   20 18
No Yes Saccharomyces cerevisiae YJM269   23 19
No Yes Saccharomyces cerevisiae T7   25 21
No Yes Saccharomyces cerevisiae FostersB   15 13
No Yes Saccharomyces cerevisiae FostersO   16 15
No Yes Saccharomyces cerevisiae VL3   19 16
No Yes Saccharomyces cerevisiae Vin13   19 17
No Yes Saccharomyces cerevisiae LalvinQA23   20 18
No Yes Saccharomyces cerevisiae AWRI796   16 14
No Yes Saccharomyces cerevisiae Sigma1278b   24 21
No Yes Saccharomyces cerevisiae W303   23 20
No Yes Saccharomyces cerevisiae JAY291   25 21
No Yes Saccharomyces cerevisiae AWRI1631   13 11
No Yes Saccharomyces cerevisiae YPS163   7 7
No Yes Saccharomyces cerevisiae M22   9 8
No Yes Saccharomyces cerevisiae T73   12 10
No Yes Saccharomyces cerevisiae CLIB215   17 16
No Yes Saccharomyces cerevisiae Y10   10 9
No Yes Saccharomyces cerevisiae YJM789   25 21
No Yes Saccharomyces cerevisiae YJM789   25 21
No Yes Saccharomyces cerevisiae RM11-1a   24 21
No Yes Saccharomyces cerevisiae RM11-1a   24 21
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 24 21
No Yes Schizosaccharomyces pombe 972h-   31 25
No Yes Batrachochytrium dendrobatidis JEL423   30 25
No Yes Batrachochytrium dendrobatidis JAM81   32 26
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 111 97
No Yes Hordeum vulgare 22 Domesticated barley 342 303
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 112 100
No Yes Trypanosoma brucei Lister 427 v4.1   31 30
No Yes Neospora caninum Nc-Liverpool 6.2   27 21
No Yes Plasmodium falciparum HB3   15 10
No Yes Plasmodium falciparum Dd2   11 6
No Yes Arthrospira platensis NIES-39   1 1
No Yes Ruminococcus champanellensis 18P13   1 1
No Yes Clostridium saccharolyticum Clostridium cf. saccharolyticum K10   1 1
No Yes Carnobacterium maltaromaticum LMA28   1 1
No Yes Melissococcus plutonius ATCC 35311   1 1
No Yes Desulfocapsa sulfexigens DSM 10523   3 3
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Bradyrhizobium japonicum USDA 6   1 1
No Yes Pseudomonas fluorescens F113   1 1
No Yes Caldisphaera lagunensis DSM 15908   1 1
No Yes Sulfolobus islandicus Y.G.57.14   1 1
No Yes Sulfolobus acidocaldarius SUSAZ   1 1
No Yes Sulfolobus acidocaldarius Ron12/I   1 1
No Yes Methanomethylovorans hollandica DSM 15978   1 1
No Yes Methanolobus psychrophilus R15   2 2
No Yes Methanosarcina mazei Tuc01   1 1
No Yes Methanoregula formicica Methanoregula formicicum SMSP   1 1
No Yes Thermococcus sp. AM4   1 1
No Yes Thermococcus sp. CL1   1 1
No Yes Natronococcus occultus SP4   1 1
No Yes Methanococcus maripaludis X1   1 1
No Yes Methanococcus maripaludis C6   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 764 633
No Yes Homo sapiens (NCBI version) Human 307 244
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 174 135
No Yes Heliconius numata (Incomplete)   11 11
No Yes Loa loa v3.3 (Request) Eye worm 70 54
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 61 50
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 60 48
No Yes Moniliophthora perniciosa FA553 (Genome survey)   7 7
No Yes Encephalitozoon intestinalis (endoparasite)   2 2
No Yes Encephalitozoon cuniculi (endoparasite)   3 3
No Yes Picea sitchensis (Incomplete) Sitka spruce 8 8
No Yes Lotus japonicus (Early assembly)   84 76
No Yes Malus x domestica (Duplicate) Apple 195 168
No Yes Ricinus communis (Early assembly) Castor bean 99 84
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   217 189
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 133 115
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 135 116
No Yes Phoenix dactylifera (Early draft) Date palm 78 69
No Yes Homo sapiens 69_37 Human 187 146
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 156 121
No Yes Gorilla gorilla 69_3.1 Western gorilla 162 126
No Yes Pongo abelii 69_2 Sumatran orangutan 155 120
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 159 125
No Yes Macaca mulatta 69_1 Rhesus monkey 148 117
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 165 130
No Yes Otolemur garnettii 69_3 Small-eared galago 159 127
No Yes Microcebus murinus 69_1 Gray mouse lemur 128 105
No Yes Rattus norvegicus 69_3.4 Norway rat 154 123
No Yes Mus musculus 69_38 House mouse 176 133
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 121 101
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 143 112
No Yes Cavia porcellus 69_3 Domestic guinea pig 157 125
No Yes Oryctolagus cuniculus 69_2 Rabbit 149 115
No Yes Ochotona princeps 69 American pika 121 99
No Yes Tupaia belangeri 69 Northern tree shrew 110 91
No Yes Sus scrofa 69_10.2 Pig 143 118
No Yes Bos taurus 69_3.1 Cattle 157 120
No Yes Vicugna pacos 69_1 Alpaca 87 72
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 147 118
No Yes Mustela putorius furo 69_1.0 Domestic ferret 166 129
No Yes Ailuropoda melanoleuca 69_1 Giant panda 161 125
No Yes Canis familiaris 69_3.1 Dog 163 129
No Yes Felis catus 69 Domestic cat 106 91
No Yes Equus caballus 69_2 Horse 158 122
No Yes Myotis lucifugus 69_2.0 Little brown bat 168 130
No Yes Pteropus vampyrus 69_1 Large flying fox 154 124
No Yes Sorex araneus 69_1 European shrew 100 81
No Yes Erinaceus europaeus 69 Western European hedgehog 99 85
No Yes Procavia capensis 69_1 Cape rock hyrax 143 113
No Yes Loxodonta africana 69_3 African savanna elephant 158 127
No Yes Echinops telfairi 69 Small Madagascar hedgehog 107 90
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 96 82
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 91 75
No Yes Macropus eugenii 69_1.0 Tammar wallaby 120 99
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 159 124
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 160 125
No Yes Ornithorhynchus anatinus 69_5 Platypus 120 92
No Yes Petromyzon marinus 69_7.0 Sea lamprey 71 54
No Yes Meleagris gallopavo 69_2 Turkey 150 118
No Yes Gallus gallus 69_2 Chicken 160 126
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 169 127
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 133 109
No Yes Anolis carolinensis 69_2.0 Green anole 143 110
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 142 112
No Yes Latimeria chalumnae 69_1 Coelacanth 142 109
No Yes Gadus morhua 69_1 Atlantic cod 177 137
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 194 149
No Yes Takifugu rubripes 69_4 Torafugu 203 151
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 195 147
No Yes Oryzias latipes 69_1 Japanese medaka 181 137
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 201 149
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 199 155
No Yes Danio rerio 69_9 Zebrafish 207 159
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 50 39
No Yes Ciona intestinalis 69 Vase tunicate 66 57
No Yes Drosophila melanogaster 69_5 Fruit fly 83 64
No Yes Caenorhabditis elegans 69_215 Roundworm 68 56
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 24 21
No Yes Arabidopsis thaliana 10 Thale cress 121 102
No Yes 2_050719S (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   2 2
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   2 2
No Yes Bath Hot Springs, filamentous community (meta-genome)   1 1
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   3 3
No Yes Dump bottom (Dump bottom) (meta-genome)   3 3
No Yes Dump top (Dump top) (meta-genome)   4 4
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   1 1
No Yes Human Gut Community Subject 8 (meta-genome)   1 1
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   1 1
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   2 2
No Yes NCBI 2017_08 genome   162508 126514
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 2
No Yes Protozoadb 2010_08 (Protozoadb)   670 545
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   8 8
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   3 3
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   9312 7677
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   2 2
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   117615 97856
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   224 219
No Yes NCBI plasmid sequences (Plasmids)   1 1
No Yes NCBI viral sequences (Viral)   10 10
No Yes PDB chains (SCOP 1.75) (PDB)   26 26
No Yes Protein Data Bank (all PDB sequenc)   734 700
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   908 908
No Yes TargetDB (Targets)   268 237
No Yes UniProt viral sequences (Viral)   3 3

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