SUPERFAMILY 1.75 HMM library and genome assignments server

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Fibritin superfamily domain assignments
in
Mannheimia haemolytica USDA-ARS-USMARC-183

Network of domain occurrence in all genomes



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Select to display   Genome       Domains   Proteins
No Yes ALL   1191 1191
No Yes Geobacter bemidjiensis Bem   1 1
No Yes Sinorhizobium meliloti SM11   1 1
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   2 2
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes NCBI 2017_08 genome   463 388
No Yes STRING v9.0.5 (STRING)   1 1
No Yes Uniprot 2018_03 genome   357 232
No Yes Global Ocean Sampling Expedition (GOS)   5 5
No Yes NCBI viral sequences (Viral)   84 57
No Yes PDB chains (SCOP 1.75) (PDB)   7 7
No Yes Protein Data Bank (all PDB sequenc)   152 143
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   65 65
No Yes UniProt viral sequences (Viral)   47 28

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]