SUPERFAMILY 1.75 HMM library and genome assignments server

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Apolipoprotein A-I superfamily domain assignments
in
Deinococcus geothermalis DSM 11300


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Select to display   Genome       Domains   Proteins
No Yes ALL   81021 81021
No Yes Homo sapiens 76_38 Human 10 9
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 6 5
No Yes Gorilla gorilla 76_3.1 Western gorilla 7 6
No Yes Pongo abelii 76_2 Sumatran orangutan 5 3
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 5 4
No Yes Papio anubis 76 Olive baboon 4 4
No Yes Macaca mulatta 76_1 Rhesus monkey 8 6
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 7 6
No Yes Otolemur garnettii 76_3 Small-eared galago 5 4
No Yes Microcebus murinus 76_1 Gray mouse lemur 5 4
No Yes Rattus norvegicus 76_5.0 Norway rat 5 5
No Yes Mus musculus 76_38 House mouse 11 11
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 4 4
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 3 3
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 5 4
No Yes Cavia porcellus 76_3 Domestic guinea pig 5 5
No Yes Oryctolagus cuniculus 76_2 Rabbit 5 4
No Yes Ochotona princeps 76 American pika 3 3
No Yes Sus scrofa 76_10.2 Pig 5 4
No Yes Bos taurus 76_3.1 Cattle 5 4
No Yes Ovis aries 76_3.1 Sheep 5 4
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 5 4
No Yes Mustela putorius furo 76_1.0 Domestic ferret 5 5
No Yes Ailuropoda melanoleuca 76_1 Giant panda 4 4
No Yes Canis familiaris 76_3.1 Dog 5 5
No Yes Felis catus 76_6.2 Domestic cat 3 3
No Yes Equus caballus 76_2 Horse 3 3
No Yes Myotis lucifugus 76_2.0 Little brown bat 2 2
No Yes Pteropus vampyrus 76_1 Large flying fox 4 3
No Yes Sorex araneus 76_1 European shrew 3 2
No Yes Erinaceus europaeus 76 Western European hedgehog 2 1
No Yes Procavia capensis 76_1 Cape rock hyrax 2 2
No Yes Loxodonta africana 76_3 African savanna elephant 7 6
No Yes Echinops telfairi 76 Small Madagascar hedgehog 4 3
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 6 5
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 1 1
No Yes Macropus eugenii 76_1.0 Tammar wallaby 3 3
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 9 8
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 4 3
No Yes Ornithorhynchus anatinus 76_5 Platypus 6 3
No Yes Saccoglossus kowalevskii v3.0   23 19
No Yes Petromyzon marinus 76_7.0 Sea lamprey 1 1
No Yes Meleagris gallopavo 76_2 Turkey 5 4
No Yes Gallus gallus 76_4 Chicken 4 3
No Yes Anas platyrhynchos 76_1.0 Mallard 2 2
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 2 2
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 6 5
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 9 6
No Yes Anolis carolinensis 76_2.0 Green anole 5 4
No Yes Xenopus laevis African clawed frog 25 16
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 9 7
No Yes Latimeria chalumnae 76_1 Coelacanth 5 4
No Yes Lepisosteus oculatus 76 Spotted gar 4 4
No Yes Gadus morhua 76_1 Atlantic cod 8 8
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 7 7
No Yes Takifugu rubripes 76_4 Torafugu 23 22
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 16 16
No Yes Oryzias latipes 76_1 Japanese medaka 11 11
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 10 10
No Yes Poecilia formosa 76 Amazon molly 9 9
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 13 13
No Yes Astyanax mexicanus 76 Mexican tetra 15 13
No Yes Danio rerio 76_9 Zebrafish 23 23
No Yes Oikopleura dioica   2 2
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 5 5
No Yes Ciona intestinalis 76 Vase tunicate 1 1
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 3 3
No Yes Adineta vaga   18 15
No Yes Octopus bimaculoides 280   2 1
No Yes Crassostrea gigas 22 Pacific oyster 20 20
No Yes Lottia gigantea Owl limpet 14 13
No Yes Helobdella robusta   3 3
No Yes Capitella sp. I   6 6
No Yes Danaus plexippus OGS1.0 Monarch butterfly 2 1
No Yes Heliconius melpomene Postman butterfly 1 1
No Yes Bombyx mori Domestic silkworm 4 2
No Yes Nasonia vitripennis Jewel wasp 2 2
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 6 5
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 5 1
No Yes Linepithema humile v1.1 Argentine ant 3 1
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 10 3
No Yes Solenopsis invicta v.2.2.3 Red fire ant 8 1
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 6 1
No Yes Atta cephalotes v1.1   1 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 4 3
No Yes Lucilia cuprina Australian sheep blowfly 4 4
No Yes Drosophila grimshawi 1.3   1 1
No Yes Drosophila willistoni 1.3   3 3
No Yes Drosophila pseudoobscura 2.13   2 2
No Yes Drosophila persimilis 1.3   2 2
No Yes Drosophila suzukii   1 1
No Yes Drosophila yakuba 1.3   1 1
No Yes Drosophila simulans 1.3   2 2
No Yes Drosophila sechellia 1.3   3 3
No Yes Drosophila erecta 1.3   3 2
No Yes Drosophila ananassae 1.3   1 1
No Yes Megaselia scalaris 22   1 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 5 5
No Yes Culex pipiens quinquefasciatus Southern house mosquito 1 1
No Yes Anopheles gambiae 49_3j African malaria mosquito 1 1
No Yes Tribolium castaneum 3.0 Red flour beetle 5 5
No Yes Pediculus humanus corporis (Early assembly) Human body louse 1 1
No Yes Acyrthosiphon pisum Pea aphid 2 2
No Yes Rhodnius prolixus 22   5 5
No Yes Strigamia maritima 22   14 3
No Yes Ixodes scapularis (Preliminary) Black-legged tick 3 3
No Yes Pristionchus pacificus   3 3
No Yes Meloidogyne incognita Southern root-knot nematode 2 2
No Yes Meloidogyne hapla   2 2
No Yes Caenorhabditis japonica   3 3
No Yes Caenorhabditis brenneri   13 9
No Yes Caenorhabditis remanei   15 8
No Yes Caenorhabditis elegans 76_235 Roundworm 44 19
No Yes Caenorhabditis briggsae 2   9 6
No Yes Echinococcus multilocularis   2 2
No Yes Echinococcus granulosus   1 1
No Yes Mnemiopsis leidyi Sea walnut 4 4
No Yes Thelohanellus kitauei   1 1
No Yes Acropora digitifera v1.0   3 3
No Yes Nematostella vectensis 1.0 Starlet sea anemone 9 9
No Yes Hydra vulgaris   3 2
No Yes Amphimedon queenslandica   9 9
No Yes Monosiga brevicollis   1 1
No Yes Sphaeroforma arctica JP610   6 5
No Yes Capsaspora owczarzaki ATCC 30864   3 3
No Yes Conidiobolus coronatus NRRL28638 v1.0   3 2
No Yes Mortierella verticillata NRRL 6337   1 1
No Yes Phycomyces blakesleeanus   1 1
No Yes Rhizopus oryzae RA 99-880   2 2
No Yes Mucor circinelloides   4 4
No Yes Rhizomucor miehei CAU432   2 2
No Yes Malassezia globosa CBS 7966   4 4
No Yes Sporisorium reilianum 22   2 2
No Yes Ustilago maydis   2 2
No Yes Mixia osmundae IAM 14324 v1.0   2 1
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   1 1
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   4 3
No Yes Melampsora laricis-populina   2 2
No Yes Microbotryum violaceum 22   3 3
No Yes Wallemia sebi v1.0   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Serpula lacrymans var. lacrymans S7.9   1 1
No Yes Coniophora puteana   1 1
No Yes Scleroderma citrinum Foug A v1.0   1 1
No Yes Coprinopsis cinerea okayama7 130 v3   3 3
No Yes Pleurotus ostreatus Oyster mushroom 2 2
No Yes Hebeloma cylindrosporum h7 v2.0   2 2
No Yes Laccaria bicolor S238N-H82   5 5
No Yes Agaricus bisporus var. bisporus   1 1
No Yes Heterobasidion annosum   3 3
No Yes Gloeophyllum trabeumv1.0   1 1
No Yes Punctularia strigosozonata v1.0   1 1
No Yes Sebacina vermifera MAFF 305830 v1.0   3 3
No Yes Fomitiporia mediterranea v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Phanerochaete chrysosporium RP-78 2.1   1 1
No Yes Trametes versicolor v1.0   1 1
No Yes Tremella mesenterica Witches' butter 1 1
No Yes Daldinia eschscholzii EC12 v1.0   3 2
No Yes Apiospora montagnei NRRL 25634 v1.0   4 4
No Yes Magnaporthe poae ATCC 64411 22   2 2
No Yes Neurospora tetrasperma   1 1
No Yes Neurospora discreta FGSC 8579   1 1
No Yes Neurospora crassa OR74A   2 2
No Yes Cryphonectria parasitica Chestnut blight fungus 1 1
No Yes Verticillium albo-atrum VaMs.102   1 1
No Yes Glomerella graminicola 22   2 2
No Yes Fusarium graminearum   2 2
No Yes Nectria haematococca mpVI   1 1
No Yes Trichoderma asperellum CBS 433.97 v1.0   1 1
No Yes Trichoderma atroviride   2 2
No Yes Trichoderma citrinoviride v1.0   2 2
No Yes Trichoderma reesei 1.2   1 1
No Yes Trichoderma virens Gv29-8   1 1
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   1 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   1 1
No Yes Botrytis cinerea B05.10   2 2
No Yes Sclerotinia sclerotiorum   1 1
No Yes Leptosphaeria maculans 22   2 2
No Yes Pyrenophora teres f. teres 22   1 1
No Yes Pyrenophora tritici-repentis   1 1
No Yes Mycosphaerella graminicola IPO323   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Dothistroma septosporum   1 1
No Yes Septoria musiva v1.0   1 1
No Yes Mycosphaerella fijiensis CIRAD86   2 2
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   2 2
No Yes Penicillium chrysogenum v1.0   2 2
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus fumigatus Af293   2 2
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus nidulans FGSC A4   1 1
No Yes Aspergillus versicolor v1.0   1 1
No Yes Neosartorya fischeri NRRL 181   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus oryzae RIB40   2 2
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus clavatus NRRL 1   1 1
No Yes Penicillium marneffei ATCC 18224   1 1
No Yes Hansenula polymorpha v2.0   3 3
No Yes Candida dubliniensis CD36   2 2
No Yes Candida tropicalis MYA-3404   4 4
No Yes Candida parapsilosis   1 1
No Yes Candida albicans SC5314   1 1
No Yes Lodderomyces elongisporus NRRL YB-4239   3 2
No Yes Candida guilliermondii ATCC 6260   1 1
No Yes Wickerhamomyces anomalus   2 2
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   1 1
No Yes Yarrowia lipolytica CLIB122   3 3
No Yes Candida lusitaniae ATCC 42720   1 1
No Yes Candida glabrata CBS138   1 1
No Yes Lachancea kluyveri   1 1
No Yes Ashbya gossypii ATCC 10895   1 1
No Yes Saccharomyces mikatae MIT   1 1
No Yes Saccharomyces paradoxus MIT   2 2
No Yes Saccharomyces cerevisiae 76 Baker's yeast 1 1
No Yes Saccharomyces bayanus MIT   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Spizellomyces punctatus DAOM BR117   4 3
No Yes Dictyostelium discoideum   15 14
No Yes Dictyostelium purpureum   6 5
No Yes Entamoeba dispar 1.2   1 1
No Yes Entamoeba invadens 1.2   2 2
No Yes Selaginella moellendorffii   6 6
No Yes Pinus taeda Loblolly pine 2 2
No Yes Picea abies Norway spruce 6 6
No Yes Eucalyptus grandis v201 Rose gum 6 6
No Yes Theobroma cacao B97-61/B2 v1 Cacao 3 3
No Yes Gossypium raimondii v221   9 9
No Yes Citrus clementina v165   5 5
No Yes Citrus sinensis v154 Sweet orange 6 6
No Yes Thellungiella halophila v173   10 10
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 10 10
No Yes Capsella rubella v183   10 10
No Yes Arabidopsis lyrata Lyrate rockcress 7 7
No Yes Arabidopsis thaliana 10 Thale cress 12 12
No Yes Carica papaya Papaya 6 5
No Yes Medicago truncatula Barrel medic 4 4
No Yes Phaseolus vulgaris v186 French bean 3 3
No Yes Glycine max v109 Soybean 5 5
No Yes Cucumis sativus v122 Cucumber 7 7
No Yes Fragaria vesca Wild strawberry 4 4
No Yes Malus domestica v196 Apple 5 5
No Yes Prunus persica v139 Peach 5 5
No Yes Linum usitatissimum v200 Flax 9 8
No Yes Manihot esculenta v147 Cassava 7 7
No Yes Populus trichocarpa v156 Black cottonwood 6 6
No Yes Vitis vinifera Wine grape 2 2
No Yes Mimulus guttatus v140 Spotted monkey flower 6 6
No Yes Solanum lycopersicum v.2.3 Tomato 6 6
No Yes Solanum tuberosum Potato 7 7
No Yes Actinidia chinensis Hongyang   7 7
No Yes Aquilegia coerulea v195   13 13
No Yes Triticum urartu 22   1 1
No Yes Triticum aestivum 22 Bread wheat 14 14
No Yes Aegilops tauschii 22   3 3
No Yes Brachypodium distachyon Stiff brome 11 11
No Yes Oryza barthii 22 African wild rice 5 5
No Yes Oryza meridionalis 22   5 5
No Yes Oryza glumaepatula 22   3 3
No Yes Oryza glaberrima African rice 2 2
No Yes Oryza punctata 22   9 9
No Yes Oryza nivara 22   4 4
No Yes Oryza brachyantha 22 Malo sina 3 3
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 7 7
No Yes Oryza sativa v193 Rice 7 7
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 4 4
No Yes Panicum virgatum v202 Switchgrass 6 6
No Yes Setaria italica v164 Foxtail millet 5 5
No Yes Zea mays subsp. mays Maize 8 8
No Yes Zea mays v181 Maize 8 8
No Yes Sorghum bicolor Sorghum 1 1
No Yes Musa balbisiana Balbis banana 4 4
No Yes Musa acuminata 22 Wild Malaysian banana 3 3
No Yes Amborella trichopoda 22   2 2
No Yes Physcomitrella patens   11 11
No Yes Coccomyxa subellipsoidea sp. C-169 v2   2 1
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 2
No Yes Chlorella variabilis sp. NC64A   3 3
No Yes Chlorella vulgaris   2 1
No Yes Volvox carteri f. nagariensis   3 3
No Yes Volvox carteri v199   2 2
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Ostreococcus sp. RCC809   1 1
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Cyanidioschyzon merolae strain 10D 22   1 1
No Yes Cyanidioschyzon merolae   1 1
No Yes Bigelowiella natans CCMP2755 22   1 1
No Yes Cyanophora paradoxa   6 4
No Yes Leishmania mexicana 2.4   1 1
No Yes Leishmania major strain Friedlin   4 4
No Yes Leishmania infantum JPCM5 2.4   1 1
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   3 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Ectocarpus siliculosus   2 2
No Yes Albugo laibachii 22   4 3
No Yes Pythium iwayamai DAOM BR242034 22   4 4
No Yes Pythium arrhenomanes ATCC 12531 22   3 3
No Yes Pythium ultimum v1.7-2   5 4
No Yes Pythium aphanidermatum DAOM BR444 22   5 4
No Yes Pythium irregulare DAOM BR486 22   7 7
No Yes Pythium vexans DAOM BR484 22   4 4
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 6 6
No Yes Phytophthora sojae 1.1   3 3
No Yes Phytophthora infestans T30-4   6 6
No Yes Phytophthora capsici   5 5
No Yes Hyaloperonospora arabidopsidis 22   3 3
No Yes Phaeodactylum tricornutumCCAP 1055/1   1 1
No Yes Fragilariopsis cylindrus   1 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Perkinsus marinus ATCC 50983   6 6
No Yes Ichthyophthirius multifiliis strain G5   1 1
No Yes Neospora caninum   2 2
No Yes Toxoplasma gondii VEG   2 2
No Yes Toxoplasma gondii ME49   2 2
No Yes Toxoplasma gondii GT1   2 2
No Yes Theileria annulata   1 1
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium vivax SaI-1 7.0   2 1
No Yes Plasmodium knowlesi strain H   2 2
No Yes Plasmodium yoelii ssp. yoelii 1   5 4
No Yes Plasmodium chabaudi   6 4
No Yes Plasmodium berghei ANKA   4 3
No Yes Symbiodinium minutum clade B1 v1.2   11 10
No Yes Naegleria gruberi   4 4
No Yes Trichomonas vaginalis   5 5
No Yes Guillardia theta CCMP2712 v1.0   2 2
No Yes Emiliania huxleyi CCMP1516   4 4
No Yes Thermobaculum terrenum ATCC BAA-798   1 1
No Yes Leptolyngbya sp. PCC 7376   2 2
No Yes Pseudanabaena sp. PCC 7367   1 1
No Yes Acaryochloris marina MBIC11017   4 4
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Thermosynechococcus sp. NK55   1 1
No Yes Thermosynechococcus elongatus BP-1   1 1
No Yes Synechococcus sp. PCC 7502   1 1
No Yes Synechococcus elongatus PCC 7942   1 1
No Yes Microcoleus sp. PCC 7113   5 4
No Yes Trichodesmium erythraeum IMS101   2 2
No Yes Geitlerinema sp. PCC 7407   2 2
No Yes Cyanothece sp. PCC 8802   4 4
No Yes Gloeocapsa sp. PCC 7428   5 5
No Yes Halothece sp. PCC 7418   5 5
No Yes Microcystis aeruginosa NIES-843   11 11
No Yes Gloeobacter violaceus PCC 7421   1 1
No Yes Rivularia sp. PCC 7116   6 5
No Yes Calothrix sp. PCC 7507   2 2
No Yes Anabaena variabilis ATCC 29413   4 4
No Yes 'Nostoc azollae' 0708   1 1
No Yes Nostoc sp. PCC 7107   2 2
No Yes Nostoc punctiforme PCC 73102   3 3
No Yes Nostoc sp. PCC 7120   2 2
No Yes Nostoc sp. PCC 7524   3 3
No Yes Anabaena sp. 90   4 4
No Yes Mycoplasma suis KI3806   2 2
No Yes Mycoplasma arthritidis 158L3-1   1 1
No Yes Mycoplasma synoviae 53   1 1
No Yes Eggerthella sp. YY7918   1 1
No Yes Eggerthella lenta DSM 2243   1 1
No Yes Atopobium parvulum DSM 20469   1 1
No Yes Nakamurella multipartita DSM 44233   2 2
No Yes Modestobacter marinus   1 1
No Yes Blastococcus saxobsidens DD2   2 2
No Yes Geodermatophilus obscurus DSM 43160   2 2
No Yes Catenulispora acidiphila DSM 44928   2 1
No Yes Stackebrandtia nassauensis DSM 44728   1 1
No Yes Frankia alni ACN14a   1 1
No Yes Thermobifida fusca YX   4 3
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   3 2
No Yes Thermomonospora curvata DSM 43183   2 2
No Yes Kitasatospora setae KM-6054   2 1
No Yes Streptomyces coelicolor A3(2)   1 1
No Yes Streptomyces sp. PAMC26508   2 1
No Yes Streptomyces flavogriseus ATCC 33331   1 1
No Yes Streptomyces sp. SirexAA-E   2 2
No Yes Streptomyces griseus subsp. griseus NBRC 13350   1 1
No Yes Streptomyces avermitilis MA-4680   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Streptomyces scabiei 87.22   1 1
No Yes Actinosynnema mirum DSM 43827   2 2
No Yes Saccharomonospora viridis DSM 43017   1 1
No Yes Pseudonocardia dioxanivorans CB1190   3 3
No Yes Saccharopolyspora erythraea NRRL 2338   2 2
No Yes Amycolatopsis mediterranei U32   1 1
No Yes Kribbella flavida DSM 17836   4 4
No Yes Nocardioides sp. JS614   2 2
No Yes Microlunatus phosphovorus NM-1   1 1
No Yes Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1   1 1
No Yes Salinispora tropica CNB-440   1 1
No Yes Actinoplanes sp. N902-109   2 2
No Yes Actinoplanes sp. SE50/110   2 2
No Yes Segniliparus rotundus DSM 44985   1 1
No Yes Tsukamurella paurometabola DSM 20162   1 1
No Yes Gordonia sp. KTR9   1 1
No Yes Gordonia polyisoprenivorans VH2   1 1
No Yes Gordonia bronchialis DSM 43247   2 2
No Yes Nocardia cyriacigeorgica GUH-2   1 1
No Yes Mycobacterium massiliense str. GO 06   1 1
No Yes Mycobacterium abscessus ATCC 19977   2 2
No Yes Mycobacterium sp. JLS   1 1
No Yes Mycobacterium intracellulare ATCC 13950   2 2
No Yes Mycobacterium avium 104   1 1
No Yes Mycobacterium vanbaalenii PYR-1   1 1
No Yes Mycobacterium canettii CIPT 140010059   2 2
No Yes Mycobacterium africanum GM041182   2 2
No Yes Mycobacterium tuberculosis KZN 1435   2 2
No Yes Mycobacterium tuberculosis   2 2
No Yes Mycobacterium bovis BCG str. Pasteur 1173P2   2 2
No Yes Mycobacterium rhodesiae NBB3   1 1
No Yes Mycobacterium ulcerans Agy99   1 1
No Yes Mycobacterium gilvum PYR-GCK   1 1
No Yes Mycobacterium chubuense NBB4   1 1
No Yes Mycobacterium marinum M   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Mycobacterium leprae Br4923   1 1
No Yes Corynebacterium kroppenstedtii DSM 44385   1 1
No Yes Corynebacterium variabile DSM 44702   1 1
No Yes Tropheryma whipplei TW08/27   1 1
No Yes Sanguibacter keddieii DSM 10542   2 1
No Yes Beutenbergia cavernae DSM 12333   1 1
No Yes Leifsonia xyli subsp. xyli str. CTCB07   1 1
No Yes Jonesia denitrificans DSM 20603   1 1
No Yes Intrasporangium calvum DSM 43043   2 2
No Yes Isoptericola variabilis 225   2 2
No Yes Xylanimonas cellulosilytica DSM 15894   1 1
No Yes Cellulomonas flavigena DSM 20109   2 1
No Yes Cellulomonas fimi ATCC 484   3 2
No Yes [Cellvibrio] gilvus ATCC 13127   1 1
No Yes Arthrobacter chlorophenolicus A6   2 2
No Yes Renibacterium salmoninarum ATCC 33209   1 1
No Yes Gardnerella vaginalis 409-05   1 1
No Yes Bifidobacterium dentium Bd1   1 1
No Yes Bifidobacterium adolescentis ATCC 15703   2 2
No Yes Arcanobacterium haemolyticum DSM 20595   1 1
No Yes Anaerolinea thermophila UNI-1   1 1
No Yes Sphaerobacter thermophilus DSM 20745   1 1
No Yes Herpetosiphon aurantiacus DSM 785   1 1
No Yes Roseiflexus sp. RS-1   1 1
No Yes Roseiflexus castenholzii DSM 13941   1 1
No Yes Truepera radiovictrix DSM 17093   1 1
No Yes Deinococcus gobiensis I-0   1 1
No Yes Deinococcus proteolyticus MRP   1 1
No Yes Deinococcus radiodurans R1   2 2
No Yes Meiothermus silvanus DSM 9946   1 1
No Yes Thermus scotoductus SA-01   4 3
No Yes Thermus thermophilus HB27   2 2
No Yes Finegoldia magna ATCC 29328   1 1
No Yes Selenomonas sputigena ATCC 35185   1 1
No Yes Erysipelothrix rhusiopathiae str. Fujisawa   1 1
No Yes Clostridiales genomosp. BVAB3 str. UPII9-5   1 1
No Yes Clostridium clariflavum DSM 19732   1 1
No Yes Eubacterium siraeum   1 1
No Yes Ethanoligenens harbinense YUAN-3   1 1
No Yes Oscillibacter valericigenes Sjm18-20   1 1
No Yes butyrate-producing bacterium SS3/4   1 1
No Yes Syntrophobotulus glycolicus DSM 8271   1 1
No Yes Desulfitobacterium hafniense Y51   1 1
No Yes Desulfitobacterium dehalogenans ATCC 51507   2 2
No Yes Desulfotomaculum kuznetsovii DSM 6115   6 3
No Yes Acetobacterium woodii DSM 1030   2 2
No Yes Eubacterium limosum KIST612   2 2
No Yes Clostridium sticklandii DSM 519   1 1
No Yes Clostridium lentocellum DSM 5427   1 1
No Yes Eubacterium rectale M104/1   1 1
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Coprococcus sp. ART55/1   2 2
No Yes Butyrivibrio proteoclasticus B316   2 2
No Yes Syntrophothermus lipocalidus DSM 12680   1 1
No Yes Clostridium tetani E88   1 1
No Yes Clostridium botulinum A str. ATCC 3502   1 1
No Yes Caldicellulosiruptor kristjanssonii 177R1B   1 1
No Yes Coprothermobacter proteolyticus DSM 5265   1 1
No Yes Carboxydothermus hydrogenoformans Z-2901   1 1
No Yes Moorella thermoacetica ATCC 39073   1 1
No Yes Carnobacterium sp. 17-4   1 1
No Yes Carnobacterium sp. WN1359   1 1
No Yes Tetragenococcus halophilus NBRC 12172   2 2
No Yes Melissococcus plutonius DAT561   1 1
No Yes Enterococcus sp. 7L76   2 2
No Yes Enterococcus hirae ATCC 9790   1 1
No Yes Enterococcus faecalis 62   2 2
No Yes Leuconostoc sp. C2   1 1
No Yes Leuconostoc kimchii IMSNU 11154   1 1
No Yes Leuconostoc citreum KM20   1 1
No Yes Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293   1 1
No Yes Leuconostoc gasicomitatum LMG 18811   1 1
No Yes Lactobacillus salivarius CECT 5713   1 1
No Yes Lactococcus garvieae ATCC 49156   2 2
No Yes Lactococcus lactis subsp. cremoris MG1363   2 2
No Yes Streptococcus intermedius JTH08   1 1
No Yes Streptococcus equi subsp. equi 4047   4 4
No Yes Streptococcus dysgalactiae subsp. equisimilis GGS_124   2 2
No Yes Streptococcus infantarius subsp. infantarius CJ18   1 1
No Yes Streptococcus uberis 0140J   1 1
No Yes Streptococcus parauberis KCTC 11537   1 1
No Yes Streptococcus parasanguinis ATCC 15912   1 1
No Yes Streptococcus pyogenes str. Manfredo   3 3
No Yes Streptococcus agalactiae A909   1 1
No Yes Streptococcus mutans NN2025   1 1
No Yes Streptococcus thermophilus LMD-9   1 1
No Yes Streptococcus salivarius 57.I   1 1
No Yes Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446   1 1
No Yes Paenibacillus mucilaginosus 3016   1 1
No Yes Bacillus selenitireducens MLS10   2 2
No Yes Listeria welshimeri serovar 6b str. SLCC5334   1 1
No Yes Listeria innocua Clip11262   1 1
No Yes Listeria seeligeri serovar 1/2b str. SLCC3954   1 1
No Yes Listeria monocytogenes serotype 4b str. CLIP 80459   1 1
No Yes Lysinibacillus sphaericus C3-41   1 1
No Yes Anoxybacillus flavithermus WK1   2 2
No Yes Geobacillus thermoleovorans CCB_US3_UF5   2 2
No Yes Geobacillus kaustophilus HTA426   2 2
No Yes Geobacillus sp. GHH01   2 2
No Yes Geobacillus sp. WCH70   2 2
No Yes Halobacillus halophilus DSM 2266   1 1
No Yes Bacillus pseudofirmus OF4   1 1
No Yes Bacillus cellulosilyticus DSM 2522   1 1
No Yes Candidatus Cloacamonas acidaminovorans   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   1 1
No Yes Chitinophaga pinensis DSM 2588   1 1
No Yes Salinibacter ruber M8   1 1
No Yes Rhodothermus marinus DSM 4252   2 2
No Yes Flexibacter litoralis DSM 6794   2 2
No Yes Candidatus Amoebophilus asiaticus 5a2   1 1
No Yes Belliella baltica DSM 15883   1 1
No Yes Marivirga tractuosa DSM 4126   2 2
No Yes Fibrella aestuarina   1 1
No Yes Leadbetterella byssophila DSM 17132   2 1
No Yes Dyadobacter fermentans DSM 18053   1 1
No Yes Spirosoma linguale DSM 74   3 3
No Yes Runella slithyformis DSM 19594   2 2
No Yes Parabacteroides distasonis ATCC 8503   1 1
No Yes Tannerella forsythia ATCC 43037   1 1
No Yes Odoribacter splanchnicus DSM 20712   1 1
No Yes Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2   1 1
No Yes Porphyromonas asaccharolytica DSM 20707   1 1
No Yes Bacteroides salanitronis DSM 18170   1 1
No Yes Bacteroides thetaiotaomicron VPI-5482   1 1
No Yes Solitalea canadensis DSM 3403   1 1
No Yes Owenweeksia hongkongensis DSM 17368   1 1
No Yes Lacinutrix sp. 5H-3-7-4   1 1
No Yes Croceibacter atlanticus HTCC2559   1 1
No Yes Zobellia galactanivorans   1 1
No Yes Cellulophaga algicola DSM 14237   1 1
No Yes Polaribacter sp. MED152   2 2
No Yes Riemerella anatipestifer ATCC 11845 = DSM 15868   2 2
No Yes Weeksella virosa DSM 16922   2 2
No Yes Flavobacterium indicum GPTSA100-9   1 1
No Yes Flavobacterium psychrophilum JIP02/86   1 1
No Yes Flavobacterium branchiophilum FL-15   1 1
No Yes Isosphaera pallida ATCC 43644   2 2
No Yes Planctomyces limnophilus DSM 3776   1 1
No Yes Thermanaerovibrio acidaminovorans DSM 6589   1 1
No Yes Turneriella parva DSM 21527   1 1
No Yes Leptospira borgpetersenii serovar Hardjo-bovis str. L550   2 2
No Yes Leptospira interrogans serovar Lai str. IPAV   1 1
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Brachyspira murdochii DSM 12563   6 1
No Yes Brachyspira intermedia PWS/A   7 1
No Yes Brachyspira pilosicoli 95/1000   7 1
No Yes Brachyspira hyodysenteriae WA1   6 1
No Yes Borrelia garinii PBi   2 1
No Yes Borrelia bissettii DN127   6 6
No Yes Borrelia afzelii PKo   3 3
No Yes Borrelia burgdorferi B31   8 7
No Yes Borrelia recurrentis A1   4 4
No Yes Borrelia duttonii Ly   6 6
No Yes Borrelia crocidurae str. Achema   7 6
No Yes Borrelia turicatae 91E135   2 1
No Yes Borrelia hermsii DAH   1 1
No Yes Spirochaeta smaragdinae DSM 11293   2 2
No Yes Sphaerochaeta coccoides DSM 17374   1 1
No Yes Treponema primitia ZAS-2   1 1
No Yes Treponema brennaborense DSM 12168   2 1
No Yes Treponema paraluiscuniculi Cuniculi A   1 1
No Yes Treponema succinifaciens DSM 2489   4 1
No Yes Treponema pallidum subsp. pallidum SS14   2 2
No Yes Treponema denticola ATCC 35405   1 1
No Yes Spirochaeta africana DSM 8902   1 1
No Yes Spirochaeta thermophila DSM 6192   2 1
No Yes Thermodesulfatator indicus DSM 15286   1 1
No Yes Thermodesulfobacterium sp. OPB45   1 1
No Yes Desulfurispirillum indicum S5   2 2
No Yes Calditerrivibrio nitroreducens DSM 19672   1 1
No Yes Flexistipes sinusarabici DSM 4947   1 1
No Yes Mesotoga prima MesG1.Ag.4.2   1 1
No Yes Thermovibrio ammonificans HB-1   1 1
No Yes Hydrogenobaculum sp. SN   1 1
No Yes Hydrogenobaculum sp. HO   1 1
No Yes Thermocrinis albus DSM 14484   1 1
No Yes Granulicella tundricola MP5ACTX9   1 1
No Yes Granulicella mallensis MP5ACTX8   1 1
No Yes Terriglobus saanensis SP1PR4   2 2
No Yes Terriglobus roseus DSM 18391   1 1
No Yes Acidobacterium capsulatum ATCC 51196   1 1
No Yes Thermodesulfovibrio yellowstonii DSM 11347   1 1
No Yes Leptospirillum ferrooxidans C2-3   1 1
No Yes Streptobacillus moniliformis DSM 12112   1 1
No Yes Sebaldella termitidis ATCC 33386   1 1
No Yes Ilyobacter polytropus DSM 2926   1 1
No Yes Fusobacterium nucleatum subsp. nucleatum ATCC 25586   1 1
No Yes candidate division WWE3 bacterium RAAC2_WWE3_1   1 1
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Arcobacter nitrofigilis DSM 7299   1 1
No Yes Campylobacter sp. 03-427   1 1
No Yes uncultured Sulfuricurvum sp. RIFRC-1   1 1
No Yes Sulfuricurvum kujiense DSM 16994   2 2
No Yes Wolinella succinogenes DSM 1740   1 1
No Yes Helicobacter hepaticus ATCC 51449   1 1
No Yes Helicobacter pylori B38   1 1
No Yes Nitratiruptor sp. SB155-2   1 1
No Yes Sulfurovum sp. NBC37-1   1 1
No Yes Desulfobacca acetoxidans DSM 11109   3 3
No Yes Desulfobacterium autotrophicum HRM2   1 1
No Yes Desulfohalobium retbaense DSM 5692   1 1
No Yes Lawsonia intracellularis PHE/MN1-00   1 1
No Yes Desulfovibrio magneticus RS-1   1 1
No Yes Desulfovibrio vulgaris subsp. vulgaris DP4   1 1
No Yes Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774   1 1
No Yes Desulfovibrio africanus str. Walvis Bay   1 1
No Yes Hippea maritima DSM 10411   1 1
No Yes Geobacter sp. M21   1 1
No Yes Geobacter lovleyi SZ   2 2
No Yes Geobacter bemidjiensis Bem   1 1
No Yes Geobacter metallireducens GS-15   1 1
No Yes Babela massiliensis   1 1
No Yes Sorangium cellulosum 'So ce 56'   1 1
No Yes Stigmatella aurantiaca DW4/3-1   2 1
No Yes Corallococcus coralloides DSM 2259   2 2
No Yes Thauera sp. MZ1T   2 2
No Yes Azoarcus sp. KH32C   2 2
No Yes Azoarcus sp. BH72   1 1
No Yes Aromatoleum aromaticum EbN1   1 1
No Yes Dechlorosoma suillum PS   1 1
No Yes Neisseria meningitidis alpha14   1 1
No Yes Neisseria meningitidis FAM18   1 1
No Yes Neisseria lactamica 020-06   1 1
No Yes Neisseria gonorrhoeae NCCP11945   2 2
No Yes beta proteobacterium CB   1 1
No Yes Thiomonas arsenitoxydans   1 1
No Yes Rubrivivax gelatinosus IL144   1 1
No Yes Leptothrix cholodnii SP-6   1 1
No Yes Burkholderia rhizoxinica HKI 454   2 2
No Yes Burkholderia xenovorans LB400   1 1
No Yes Ralstonia eutropha JMP134   1 1
No Yes Cupriavidus taiwanensis LMG 19424   2 2
No Yes Cupriavidus metallidurans CH34   1 1
No Yes Ralstonia pickettii 12D   1 1
No Yes Ralstonia solanacearum CFBP2957   1 1
No Yes Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1   1 1
No Yes Burkholderia sp. RPE64   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Burkholderia thailandensis E264   2 2
No Yes Burkholderia pseudomallei 1106a   1 1
No Yes Burkholderia mallei SAVP1   1 1
No Yes Burkholderia ambifaria AMMD   1 1
No Yes Burkholderia cenocepacia HI2424   2 2
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia gladioli BSR3   1 1
No Yes Burkholderia glumae BGR1   1 1
No Yes Verminephrobacter eiseniae EF01-2   1 1
No Yes Ramlibacter tataouinensis TTB310   2 2
No Yes Delftia sp. Cs1-4   1 1
No Yes Delftia acidovorans SPH-1   1 1
No Yes Polaromonas sp. JS666   1 1
No Yes Polaromonas naphthalenivorans CJ2   3 3
No Yes Variovorax paradoxus S110   1 1
No Yes Rhodoferax ferrireducens T118   1 1
No Yes Acidovorax ebreus TPSY   1 1
No Yes Acidovorax sp. KKS102   1 1
No Yes Acidovorax sp. JS42   1 1
No Yes Acidovorax citrulli AAC00-1   1 1
No Yes Acidovorax avenae subsp. avenae ATCC 19860   1 1
No Yes Comamonas testosteroni CNB-2   1 1
No Yes Herminiimonas arsenicoxydans   2 2
No Yes Collimonas fungivorans Ter331   1 1
No Yes Janthinobacterium sp. Marseille   1 1
No Yes Herbaspirillum seropedicae SmR1   1 1
No Yes Pusillimonas sp. T7-7   1 1
No Yes Taylorella asinigenitalis MCE3   1 1
No Yes Bordetella petrii DSM 12804   3 3
No Yes Bordetella pertussis Tohama I   1 1
No Yes Bordetella parapertussis 12822   1 1
No Yes Bordetella bronchiseptica RB50   2 2
No Yes Achromobacter xylosoxidans A8   2 2
No Yes Achromobacter xylosoxidans   1 1
No Yes Thiobacillus denitrificans ATCC 25259   1 1
No Yes Nitrosospira multiformis ATCC 25196   1 1
No Yes Nitrosomonas sp. Is79A3   3 3
No Yes Magnetococcus marinus MC-1   1 1
No Yes Asticcacaulis excentricus CB 48   1 1
No Yes Brevundimonas subvibrioides ATCC 15264   1 1
No Yes Caulobacter segnis ATCC 21756   1 1
No Yes Phenylobacterium zucineum HLK1   1 1
No Yes Novosphingobium sp. PP1Y   2 2
No Yes Hirschia baltica ATCC 49814   1 1
No Yes Phaeobacter gallaeciensis 2.10   1 1
No Yes Pseudovibrio sp. FO-BEG1   5 1
No Yes Ruegeria sp. TM1040   1 1
No Yes Roseobacter litoralis Och 149   1 1
No Yes Roseobacter denitrificans OCh 114   2 2
No Yes Paracoccus denitrificans PD1222   1 1
No Yes Magnetospirillum magneticum AMB-1   1 1
No Yes Rhodospirillum centenum SW   1 1
No Yes Azospirillum brasilense Sp245   1 1
No Yes Gluconacetobacter xylinus NBRC 3288   1 1
No Yes Granulibacter bethesdensis CGDNIH1   1 1
No Yes Acetobacter pasteurianus IFO 3283-01   1 1
No Yes Polymorphum gilvum SL003B-26A1   6 3
No Yes Candidatus Puniceispirillum marinum IMCC1322   1 1
No Yes Orientia tsutsugamushi str. Boryong   1 1
No Yes Rickettsia bellii OSU 85-389   1 1
No Yes Rickettsia canadensis str. McKiel   1 1
No Yes Starkeya novella DSM 506   2 1
No Yes Xanthobacter autotrophicus Py2   2 2
No Yes Azorhizobium caulinodans ORS 571   4 2
No Yes Methylobacterium chloromethanicum CM4   5 2
No Yes Methylobacterium extorquens AM1   5 2
No Yes Methylobacterium populi BJ001   4 2
No Yes Methylobacterium nodulans ORS 2060   3 1
No Yes Methylobacterium radiotolerans JCM 2831   2 1
No Yes Ochrobactrum anthropi ATCC 49188   1 1
No Yes Brucella microti CCM 4915   3 2
No Yes Brucella pinnipedialis B2/94   3 2
No Yes Brucella canis ATCC 23365   3 2
No Yes Brucella suis ATCC 23445   3 2
No Yes Brucella melitensis ATCC 23457   3 2
No Yes Brucella ovis ATCC 25840   3 2
No Yes Brucella abortus S19   3 2
No Yes Sinorhizobium fredii NGR234   2 1
No Yes Sinorhizobium medicae WSM419   4 1
No Yes Sinorhizobium meliloti AK83   4 1
No Yes Genome sequence of Rhizobium sp. strain IRBG74   3 1
No Yes Rhizobium etli CIAT 652   4 1
No Yes Rhizobium leguminosarum bv. viciae 3841   4 1
No Yes Agrobacterium tumefaciens str. C58   2 1
No Yes Agrobacterium radiobacter K84   4 1
No Yes Agrobacterium sp. H13-3   2 1
No Yes Agrobacterium vitis S4   3 1
No Yes Candidatus Liberibacter asiaticus str. psy62   1 1
No Yes Mesorhizobium sp. BNC1   1 1
No Yes Mesorhizobium opportunistum WSM2075   2 2
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   1 1
No Yes Mesorhizobium loti MAFF303099   3 2
No Yes Methylocella silvestris BL2   7 1
No Yes Beijerinckia indica subsp. indica ATCC 9039   6 2
No Yes Pelagibacterium halotolerans B2   2 1
No Yes Rhodomicrobium vannielii ATCC 17100   1 1
No Yes Hyphomicrobium sp. MC1   1 1
No Yes Hyphomicrobium denitrificans ATCC 51888   1 1
No Yes Oligotropha carboxidovorans OM4   2 1
No Yes Rhodopseudomonas palustris BisA53   4 3
No Yes Nitrobacter winogradskyi Nb-255   1 1
No Yes Nitrobacter hamburgensis X14   1 1
No Yes Bradyrhizobium japonicum USDA 110   2 1
No Yes Bradyrhizobium sp. ORS 278   1 1
No Yes Methylocystis sp. SC2   4 1
No Yes Bartonella tribocorum CIP 105476   1 1
No Yes Bartonella clarridgeiae 73   1 1
No Yes Bartonella henselae str. Houston-1   2 1
No Yes Bartonella grahamii as4aup   2 1
No Yes Bartonella quintana str. Toulouse   3 1
No Yes Bartonella bacilliformis KC583   2 1
No Yes Aggregatibacter actinomycetemcomitans D7S-1   1 1
No Yes Haemophilus somnus 129PT   1 1
No Yes Pasteurella multocida subsp. multocida str. 3480   2 2
No Yes Haemophilus ducreyi 35000HP   1 1
No Yes Haemophilus influenzae PittEE   2 2
No Yes Actinobacillus succinogenes 130Z   1 1
No Yes Psychromonas ingrahamii 37   1 1
No Yes Shewanella sp. MR-4   1 1
No Yes Pseudoalteromonas atlantica T6c   1 1
No Yes Marinobacter adhaerens HP15   3 3
No Yes Marinobacter sp. BSs20148   2 2
No Yes Marinobacter hydrocarbonoclasticus ATCC 49840   2 2
No Yes Marinobacter aquaeolei VT8   1 1
No Yes Alteromonas macleodii str. 'Deep ecotype'   2 2
No Yes Kangiella koreensis DSM 16069   1 1
No Yes Hahella chejuensis KCTC 2396   1 1
No Yes Alcanivorax borkumensis SK2   1 1
No Yes Halomonas elongata DSM 2581   1 1
No Yes Methylomicrobium alcaliphilum   2 2
No Yes Pseudoxanthomonas spadix BD-a59   1 1
No Yes Pseudoxanthomonas suwonensis 11-1   1 1
No Yes Stenotrophomonas maltophilia K279a   1 1
No Yes Xylella fastidiosa M23   1 1
No Yes Xanthomonas albilineans GPE PC73   1 1
No Yes Xanthomonas oryzae pv. oryzae PXO99A   1 1
No Yes Xanthomonas campestris pv. campestris str. B100   1 1
No Yes Alkalilimnicola ehrlichii MLHE-1   1 1
No Yes Thioalkalivibrio sulfidophilus HL-EbGr7   1 1
No Yes Thioalkalivibrio sp. K90mix   1 1
No Yes Halorhodospira halophila SL1   1 1
No Yes Allochromatium vinosum DSM 180   1 1
No Yes Thiocystis violascens DSM 198   2 2
No Yes Nitrosococcus watsonii C-113   1 1
No Yes Nitrosococcus halophilus Nc4   1 1
No Yes Legionella pneumophila str. Corby   1 1
No Yes gamma proteobacterium HdN1   1 1
No Yes Photorhabdus luminescens subsp. laumondii TTO1   1 1
No Yes Xenorhabdus bovienii SS-2004   2 2
No Yes Xenorhabdus nematophila ATCC 19061   2 2
No Yes Providencia stuartii MRSN 2154   1 1
No Yes Proteus mirabilis HI4320   1 1
No Yes Serratia sp. AS12   1 1
No Yes Serratia plymuthica AS9   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Dickeya dadantii Ech703   1 1
No Yes Sodalis glossinidius str. 'morsitans'   2 2
No Yes Erwinia tasmaniensis Et1/99   1 1
No Yes Erwinia sp. Ejp617   1 1
No Yes Erwinia amylovora ATCC 49946   2 2
No Yes Klebsiella oxytoca E718   1 1
No Yes Enterobacter aerogenes KCTC 2190   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Pseudomonas sp. VLB120   1 1
No Yes Moraxella catarrhalis RH4   2 2
No Yes Acinetobacter oleivorans DR1   2 2
No Yes Acinetobacter calcoaceticus PHEA-2   2 2
No Yes Acinetobacter baumannii ATCC 17978   2 2
No Yes Acinetobacter sp. ADP1   1 1
No Yes Methylophaga sp. JAM1   1 1
No Yes Thiomicrospira crunogena XCL-2   2 2
No Yes Thioalkalimicrobium cyclicum ALM1   1 1
No Yes Francisella tularensis subsp. tularensis WY96-3418   1 1
No Yes Francisella novicida U112   1 1
No Yes Cenarchaeum symbiosum A   1 1
No Yes Candidatus Korarchaeum cryptofilum OPF8   3 3
No Yes Pyrolobus fumarii 1A   3 3
No Yes Hyperthermus butylicus DSM 5456   1 1
No Yes Thermogladius cellulolyticus 1633   1 1
No Yes Ignicoccus hospitalis KIN4/I   2 2
No Yes Staphylothermus marinus F1   1 1
No Yes Desulfurococcus fermentans DSM 16532   1 1
No Yes Desulfurococcus kamchatkensis 1221n   1 1
No Yes Metallosphaera sedula DSM 5348   4 3
No Yes Acidianus hospitalis W1   1 1
No Yes Sulfolobus tokodaii str. 7   2 2
No Yes Sulfolobus solfataricus P2   1 1
No Yes Pyrobaculum calidifontis JCM 11548   2 2
No Yes Pyrobaculum oguniense TE7   1 1
No Yes halophilic archaeon DL31   1 1
No Yes Methanocella arvoryzae MRE50   3 2
No Yes Methanocella conradii HZ254   1 1
No Yes Methanocella paludicola SANAE   1 1
No Yes Methanosaeta harundinacea 6Ac   1 1
No Yes Methanosaeta concilii GP6   1 1
No Yes Methanosarcina acetivorans C2A   1 1
No Yes Archaeoglobus veneficus SNP6   1 1
No Yes Salinarchaeum sp. Harcht-Bsk1   1 1
No Yes Haloterrigena turkmenica DSM 5511   2 2
No Yes Halorubrum lacusprofundi ATCC 49239   1 1
No Yes Halorhabdus utahensis DSM 12940   1 1
No Yes Natronomonas pharaonis DSM 2160   2 2
No Yes Halalkalicoccus jeotgali B3   1 1
No Yes Methanobrevibacter ruminantium M1   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 21 16
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 1 1
No Yes Ascaris suum Victoria/Ghent Pig roundworm 2 2
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 4 2
No Yes Histoplasma capsulatum H143   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Aspergillus fumigatus A1163   2 2
No Yes Candida albicans WO-1   1 1
No Yes Saccharomyces cerevisiae UC5   1 1
No Yes Saccharomyces cerevisiae PW5   1 1
No Yes Saccharomyces cerevisiae FL100   1 1
No Yes Saccharomyces cerevisiae CLIB382   1 1
No Yes Saccharomyces cerevisiae CLIB324   1 1
No Yes Saccharomyces cerevisiae CBS7960   1 1
No Yes Saccharomyces cerevisiae YJM269   1 1
No Yes Saccharomyces cerevisiae T7   1 1
No Yes Saccharomyces cerevisiae FostersO   1 1
No Yes Saccharomyces cerevisiae VL3   1 1
No Yes Saccharomyces cerevisiae LalvinQA23   1 1
No Yes Saccharomyces cerevisiae AWRI796   1 1
No Yes Saccharomyces cerevisiae Sigma1278b   1 1
No Yes Saccharomyces cerevisiae W303   1 1
No Yes Saccharomyces cerevisiae JAY291   1 1
No Yes Saccharomyces cerevisiae AWRI1631   1 1
No Yes Saccharomyces cerevisiae M22   1 1
No Yes Saccharomyces cerevisiae T73   1 1
No Yes Saccharomyces cerevisiae CLIB215   1 1
No Yes Saccharomyces cerevisiae YJM789   1 1
No Yes Saccharomyces cerevisiae YJM789   1 1
No Yes Saccharomyces cerevisiae RM11-1a   1 1
No Yes Saccharomyces cerevisiae RM11-1a   1 1
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 4 4
No Yes Hordeum vulgare 22 Domesticated barley 8 8
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 5 5
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Neospora caninum Nc-Liverpool 6.2   2 2
No Yes Plasmodium falciparum Dd2   1 1
No Yes Chroococcidiopsis thermalis PCC 7203   5 5
No Yes Chamaesiphon minutus PCC 6605   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-P   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-N   1 1
No Yes Synechocystis sp. PCC 6803 substr. GT-I   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Dactylococcopsis salina PCC 8305   1 1
No Yes Synechococcus sp. RCC307   1 1
No Yes Synechococcus elongatus PCC 6301   1 1
No Yes Prochlorococcus marinus str. NATL2A   1 1
No Yes Crinalium epipsammum PCC 9333   2 2
No Yes Oscillatoria nigro-viridis PCC 7112   2 2
No Yes Oscillatoria acuminata PCC 6304   6 6
No Yes Arthrospira platensis NIES-39   7 7
No Yes Cyanothece sp. PCC 7822   6 6
No Yes Cyanothece sp. PCC 7425   3 3
No Yes Cyanothece sp. PCC 7424   5 5
No Yes Cyanothece sp. ATCC 51142   1 1
No Yes Cyanothece sp. PCC 8801   5 5
No Yes Cyanobacterium aponinum PCC 10605   8 8
No Yes Cyanobacterium stanieri PCC 7202   1 1
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   1 1
No Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327   7 7
No Yes Stanieria cyanosphaera PCC 7437   7 7
No Yes Calothrix parietina Calothrix sp. PCC 6303   1 1
No Yes Cylindrospermum stagnale PCC 7417   2 2
No Yes Anabaena cylindrica PCC 7122   2 1
No Yes Mycoplasma parvum str. Indiana   1 1
No Yes Candidatus Mycoplasma haemominutum 'Birmingham 1'   1 1
No Yes Mycoplasma suis str. Illinois   3 3
No Yes Mycoplasma gallisepticum str. R(high)   1 1
No Yes Mycoplasma gallisepticum str. R(low)   1 1
No Yes Gordonibacter pamelaeae 7-10-1-b   1 1
No Yes Frankia sp. EuI1c   1 1
No Yes Frankia sp. CcI3   1 1
No Yes Nocardiopsis alba ATCC BAA-2165   2 2
No Yes Streptomyces davawensis JCM 4913   1 1
No Yes Streptomyces venezuelae ATCC 10712   1 1
No Yes Streptomyces collinus Tu 365   4 4
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Saccharothrix espanaensis DSM 44229   2 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis orientalis HCCB10007   2 2
No Yes Propionibacterium avidum 44067   1 1
No Yes Nocardia brasiliensis ATCC 700358   1 1
No Yes Mycobacterium sp. MOTT36Y   1 1
No Yes Mycobacterium sp. JDM601   1 1
No Yes Mycobacterium abscessus subsp. bolletii 50594   1 1
No Yes Mycobacterium liflandii 128FXT   1 1
No Yes Mycobacterium sp. KMS   1 1
No Yes Mycobacterium sp. MCS   1 1
No Yes Mycobacterium yongonense 05-1390   1 1
No Yes Mycobacterium intracellulare MOTT-64   2 2
No Yes Mycobacterium indicus pranii MTCC 9506   2 2
No Yes Mycobacterium intracellulare MOTT-02   2 2
No Yes Mycobacterium avium subsp. paratuberculosis MAP4   1 1
No Yes Mycobacterium avium subsp. paratuberculosis K-10   1 1
No Yes Mycobacterium canettii CIPT 140070017   2 2
No Yes Mycobacterium canettii CIPT 140060008   2 2
No Yes Mycobacterium canettii CIPT 140070008   2 2
No Yes Mycobacterium canettii CIPT 140070010   2 2
No Yes Mycobacterium tuberculosis EAI5/NITR206   2 2
No Yes Mycobacterium tuberculosis EAI5   2 2
No Yes Mycobacterium tuberculosis CAS/NITR204   1 1
No Yes Mycobacterium tuberculosis str. Beijing/NITR203   2 2
No Yes Mycobacterium tuberculosis UT205   2 2
No Yes Mycobacterium tuberculosis RGTB423   2 2
No Yes Mycobacterium tuberculosis RGTB327   2 2
No Yes Mycobacterium tuberculosis CTRI-2   2 2
No Yes Mycobacterium tuberculosis str. Erdman = ATCC 35801   2 2
No Yes Mycobacterium tuberculosis KZN 605   2 2
No Yes Mycobacterium tuberculosis KZN 4207   2 2
No Yes Mycobacterium tuberculosis CCDC5180   2 2
No Yes Mycobacterium tuberculosis CCDC5079   2 2
No Yes Mycobacterium tuberculosis CCDC5079   2 2
No Yes Mycobacterium tuberculosis H37Ra   2 2
No Yes Mycobacterium tuberculosis str. Haarlem/NITR202   1 1
No Yes Mycobacterium tuberculosis str. Haarlem   2 2
No Yes Mycobacterium tuberculosis F11   2 2
No Yes Mycobacterium tuberculosis H37Rv   2 2
No Yes Mycobacterium tuberculosis CDC1551   2 2
No Yes Mycobacterium bovis AF2122/97   2 2
No Yes Mycobacterium bovis BCG str. Korea 1168P   2 2
No Yes Mycobacterium bovis BCG str. Mexico   2 2
No Yes Mycobacterium bovis BCG str. Tokyo 172   2 2
No Yes Mycobacterium gilvum Spyr1   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Mycobacterium leprae TN   1 1
No Yes Mycobacterium kansasii ATCC 12478   1 1
No Yes Tropheryma whipplei str. Twist   1 1
No Yes Leifsonia xyli subsp. cynodontis DSM 46306   2 1
No Yes Clavibacter michiganensis subsp. sepedonicus   1 1
No Yes Gardnerella vaginalis HMP9231   1 1
No Yes Gardnerella vaginalis ATCC 14019   1 1
No Yes Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222   1 1
No Yes Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222   1 1
No Yes Bifidobacterium asteroides PRL2011   1 1
No Yes Bifidobacterium bifidum PRL2010   1 1
No Yes Bifidobacterium bifidum BGN4   1 1
No Yes Actinomyces odontolyticus ATCC 17982   1 1
No Yes Actinomyces viscosus C505   1 1
No Yes Chthonomonas calidirosea T49   1 1
No Yes Thermus oshimai JL-2   3 3
No Yes Thermus thermophilus JL-18   3 3
No Yes Thermus thermophilus SG0.5JP17-16   3 3
No Yes Thermus thermophilus HB8   2 2
No Yes Erysipelothrix rhusiopathiae SY1027   1 1
No Yes Eubacterium siraeum V10Sc8a   1 1
No Yes [Clostridium] stercorarium Clostridiu subsp. stercorarium DSM 8532   2 2
No Yes Desulfitobacterium dichloroeliminans LMG P-21439   1 1
No Yes Desulfitobacterium hafniense DCB-2   1 1
No Yes Desulfotomaculum gibsoniae DSM 7213   1 1
No Yes Clostridium saccharolyticum Clostridium cf. saccharolyticum K10   1 1
No Yes Clostridium sp. SY8519   2 2
No Yes Clostridium pasteurianum BC1   1 1
No Yes Clostridium botulinum H04402 065   1 1
No Yes Clostridium botulinum BKT015925   1 1
No Yes Clostridium botulinum F str. 230613   1 1
No Yes Clostridium botulinum F str. Langeland   1 1
No Yes Clostridium botulinum B1 str. Okra   1 1
No Yes Clostridium botulinum Ba4 str. 657   1 1
No Yes Clostridium botulinum A str. Hall   1 1
No Yes Clostridium botulinum A str. ATCC 19397   2 2
No Yes Halobacteroides halobius DSM 5150   1 1
No Yes Carnobacterium maltaromaticum LMA28   1 1
No Yes Melissococcus plutonius ATCC 35311   1 1
No Yes Enterococcus casseliflavus EC20   1 1
No Yes Enterococcus faecalis str. Symbioflor 1   2 2
No Yes Enterococcus faecalis D32   2 2
No Yes Enterococcus faecalis OG1RF   2 2
No Yes Enterococcus faecalis V583   2 2
No Yes Leuconostoc carnosum JB16   1 1
No Yes Leuconostoc mesenteroides subsp. mesenteroides J18   1 1
No Yes Leuconostoc gelidum JB7   1 1
No Yes Lactobacillus johnsonii DPC 6026   1 1
No Yes Lactobacillus salivarius UCC118   1 1
No Yes Lactococcus garvieae Lg2   2 2
No Yes Lactococcus lactis subsp. lactis KLDS 4.0325   1 1
No Yes Lactococcus lactis subsp. lactis IO-1   2 2
No Yes Lactococcus lactis subsp. lactis CV56   1 1
No Yes Lactococcus lactis subsp. lactis KF147   1 1
No Yes Lactococcus lactis subsp. lactis Il1403   1 1
No Yes Lactococcus lactis subsp. cremoris KW2   1 1
No Yes Lactococcus lactis subsp. cremoris UC509.9   1 1
No Yes Lactococcus lactis subsp. cremoris A76   1 1
No Yes Lactococcus lactis subsp. cremoris NZ9000   2 2
No Yes Lactococcus lactis subsp. cremoris SK11   2 2
No Yes Streptococcus constellatus subsp. pharyngis C1050   2 2
No Yes Streptococcus constellatus subsp. pharyngis C818   2 2
No Yes Streptococcus constellatus subsp. pharyngis C232   2 2
No Yes Streptococcus intermedius B196   2 2
No Yes Streptococcus intermedius C270   2 2
No Yes Streptococcus lutetiensis 033   1 1
No Yes Streptococcus dysgalactiae subsp. equisimilis 167   2 2
No Yes Streptococcus dysgalactiae subsp. equisimilis AC-2713   2 2
No Yes Streptococcus dysgalactiae subsp. equisimilis ATCC 12394   1 1
No Yes Streptococcus dysgalactiae subsp. equisimilis RE378   2 2
No Yes Streptococcus iniae SF1   1 1
No Yes Streptococcus parasanguinis FW213   1 1
No Yes Streptococcus pyogenes HSC5   3 3
No Yes Streptococcus pyogenes A20   2 2
No Yes Streptococcus pyogenes MGAS1882   2 2
No Yes Streptococcus pyogenes MGAS15252   1 1
No Yes Streptococcus pyogenes Alab49   3 3
No Yes Streptococcus pyogenes MGAS10750   3 3
No Yes Streptococcus pyogenes MGAS10270   4 4
No Yes Streptococcus pyogenes MGAS2096   4 4
No Yes Streptococcus pyogenes MGAS9429   3 3
No Yes Streptococcus pyogenes MGAS6180   4 4
No Yes Streptococcus pyogenes NZ131   1 1
No Yes Streptococcus pyogenes MGAS8232   6 6
No Yes Streptococcus pyogenes MGAS10394   7 7
No Yes Streptococcus pyogenes MGAS315   4 4
No Yes Streptococcus pyogenes SSI-1   3 3
No Yes Streptococcus pyogenes M1 476   2 2
No Yes Streptococcus pyogenes MGAS5005   2 2
No Yes Streptococcus pyogenes M1 GAS   3 3
No Yes Streptococcus pneumoniae A026   1 1
No Yes Streptococcus pneumoniae ST556   1 1
No Yes Streptococcus pneumoniae INV200   1 1
No Yes Streptococcus pneumoniae TCH8431/19A   1 1
No Yes Streptococcus pneumoniae CGSP14   1 1
No Yes Streptococcus agalactiae ILRI112   1 1
No Yes Streptococcus agalactiae ILRI005   2 2
No Yes Streptococcus agalactiae 09mas018883   1 1
No Yes Streptococcus agalactiae 2-22   1 1
No Yes Streptococcus agalactiae SA20-06   1 1
No Yes Streptococcus agalactiae GD201008-001   1 1
No Yes Streptococcus agalactiae NEM316   1 1
No Yes Streptococcus agalactiae 2603V/R   1 1
No Yes Streptococcus mutans GS-5   1 1
No Yes Streptococcus mutans LJ23   1 1
No Yes Streptococcus mutans UA159   1 1
No Yes Streptococcus thermophilus MN-ZLW-002   1 1
No Yes Streptococcus thermophilus JIM 8232   1 1
No Yes Streptococcus thermophilus ND03   1 1
No Yes Streptococcus thermophilus CNRZ1066   1 1
No Yes Streptococcus thermophilus LMG 18311   1 1
No Yes Streptococcus suis ST3   1 1
No Yes Streptococcus suis D9   1 1
No Yes Streptococcus suis D12   1 1
No Yes Streptococcus suis ST1   1 1
No Yes Streptococcus salivarius CCHSS3   1 1
No Yes Streptococcus salivarius JIM8777   1 1
No Yes Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1   1 1
No Yes Paenibacillus mucilaginosus K02   2 2
No Yes Listeria monocytogenes EGD sequence   1 1
No Yes Listeria monocytogenes N53-1   1 1
No Yes Listeria monocytogenes La111   1 1
No Yes Listeria monocytogenes serotype 4b str. LL195   1 1
No Yes Listeria monocytogenes 07PF0776   1 1
No Yes Listeria monocytogenes M7   1 1
No Yes Listeria monocytogenes J1-220   1 1
No Yes Listeria monocytogenes J1816   1 1
No Yes Listeria monocytogenes SLCC2376   1 1
No Yes Listeria monocytogenes SLCC5850   1 1
No Yes Listeria monocytogenes ATCC 19117   1 1
No Yes Listeria monocytogenes L312   1 1
No Yes Listeria monocytogenes SLCC2479   1 1
No Yes Listeria monocytogenes SLCC7179   1 1
No Yes Listeria monocytogenes SLCC2540   1 1
No Yes Listeria monocytogenes SLCC2378   1 1
No Yes Listeria monocytogenes serotype 1/2b str. SLCC2755   1 1
No Yes Listeria monocytogenes serotype 1/2c str. SLCC2372   1 1
No Yes Listeria monocytogenes serotype 7 str. SLCC2482   1 1
No Yes Listeria monocytogenes 08-5578   1 1
No Yes Listeria monocytogenes 08-5923   1 1
No Yes Listeria monocytogenes L99   1 1
No Yes Listeria monocytogenes HCC23   1 1
No Yes Listeria monocytogenes 10403S   1 1
No Yes Listeria monocytogenes J0161   1 1
No Yes Listeria monocytogenes Finland 1998   1 1
No Yes Listeria monocytogenes FSL R2-561   1 1
No Yes Listeria monocytogenes serotype 4b str. F2365   1 1
No Yes Listeria monocytogenes EGD-e   1 1
No Yes Geobacillus sp. C56-T3   1 1
No Yes Geobacillus sp. Y412MC52   1 1
No Yes Geobacillus sp. Y412MC61   1 1
No Yes Amphibacillus xylanus NBRC 15112   2 2
No Yes Bacillus amyloliquefaciens IT-45   1 1
No Yes Bacillus infantis NRRL B-14911   1 1
No Yes Bacillus cereus subsp. cytotoxis NVH 391-98   1 1
No Yes Bacillus thuringiensis HD-771   1 1
No Yes Bacillus thuringiensis HD-789   1 1
No Yes Bacillus thuringiensis serovar kurstaki str. HD73   2 2
No Yes Bacillus thuringiensis serovar finitimus YBT-020   1 1
No Yes Bacillus cereus B4264   1 1
No Yes Staphylococcus aureus subsp. aureus ED98   1 1
No Yes Rhodothermus marinus SG0.5JP17-172   4 4
No Yes Echinicola vietnamensis DSM 17526   1 1
No Yes Emticicia oligotrophica DSM 17448   2 2
No Yes Bacteroides xylanisolvens XB1A   1 1
No Yes Nonlabens dokdonensis DSW-6   1 1
No Yes Psychroflexus torquis ATCC 700755   1 1
No Yes Riemerella anatipestifer RA-CH-2   2 2
No Yes Riemerella anatipestifer RA-CH-1   2 2
No Yes Riemerella anatipestifer RA-GD   2 2
No Yes Riemerella anatipestifer ATCC 11845 = DSM 15868   2 2
No Yes Leptospira borgpetersenii serovar Hardjo-bovis str. JB197   2 2
No Yes Leptospira interrogans serovar Lai str. 56601   1 1
No Yes Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130   1 1
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Brachyspira pilosicoli WesB   7 1
No Yes Brachyspira pilosicoli B2904   6 1
No Yes Borrelia valaisiana VS116   1 1
No Yes Borrelia garinii NMJW1   2 1
No Yes Borrelia garinii BgVir   1 1
No Yes Borrelia afzelii HLJ01   1 1
No Yes Borrelia afzelii PKo   3 3
No Yes Borrelia burgdorferi CA382   2 1
No Yes Borrelia burgdorferi JD1   8 7
No Yes Borrelia burgdorferi N40   6 5
No Yes Borrelia burgdorferi ZS7   9 7
No Yes Borrelia miyamotoi LB-2001   1 1
No Yes Treponema pedis str. T A4   1 1
No Yes Treponema pallidum str. Fribourg-Blanc   1 1
No Yes Treponema pallidum subsp. pertenue str. Gauthier   1 1
No Yes Treponema pallidum subsp. pertenue str. CDC2   1 1
No Yes Treponema pallidum subsp. pertenue str. SamoaD   1 1
No Yes Treponema pallidum subsp. pallidum str. Mexico A   1 1
No Yes Treponema pallidum subsp. pallidum str. Chicago   1 1
No Yes Treponema pallidum subsp. pallidum DAL-1   1 1
No Yes Treponema pallidum subsp. pallidum str. Nichols   1 1
No Yes Spirochaeta thermophila DSM 6578   1 1
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Fusobacterium nucleatum subsp. vincentii 3_1_36A2   2 2
No Yes Fusobacterium nucleatum subsp. animalis 4_8   2 2
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Helicobacter pylori BM012S   1 1
No Yes Helicobacter pylori BM012A   1 1
No Yes Helicobacter pylori Cuz20   1 1
No Yes Lawsonia intracellularis N343   1 1
No Yes Geobacter sp. M18   2 2
No Yes Myxococcus stipitatus DSM 14675   2 2
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis G2136   2 2
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis M01-240355   1 1
No Yes Neisseria meningitidis 8013   1 1
No Yes Neisseria meningitidis 053442   2 2
No Yes Neisseria meningitidis Z2491   1 1
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   2 2
No Yes Neisseria meningitidis MC58   1 1
No Yes Neisseria gonorrhoeae TCDC-NG08107   2 2
No Yes Neisseria gonorrhoeae FA 1090   2 2
No Yes Burkholderia phenoliruptrix BR3459a   1 1
No Yes Pandoraea pnomenusa 3kgm   2 2
No Yes Ralstonia pickettii 12J   1 1
No Yes Ralstonia solanacearum FQY_4   3 2
No Yes Ralstonia solanacearum Po82   2 2
No Yes Ralstonia solanacearum PSI07   2 2
No Yes Ralstonia solanacearum CMR15   2 2
No Yes Ralstonia solanacearum GMI1000   3 2
No Yes Polynucleobacter necessarius subsp. necessarius STIR1   1 1
No Yes Burkholderia sp. YI23   1 1
No Yes Burkholderia sp. CCGE1001   1 1
No Yes Burkholderia thailandensis MSMB121   1 1
No Yes Burkholderia pseudomallei MSHR305   1 1
No Yes Burkholderia pseudomallei NCTC 13179   1 1
No Yes Burkholderia pseudomallei BPC006   1 1
No Yes Burkholderia pseudomallei 1026b   1 1
No Yes Burkholderia pseudomallei MSHR346   1 1
No Yes Burkholderia pseudomallei 668   1 1
No Yes Burkholderia pseudomallei 1710b   1 1
No Yes Burkholderia pseudomallei K96243   1 1
No Yes Burkholderia mallei NCTC 10229   1 1
No Yes Burkholderia mallei NCTC 10247   1 1
No Yes Burkholderia mallei ATCC 23344   1 1
No Yes Burkholderia lata   2 2
No Yes Burkholderia ambifaria MC40-6   1 1
No Yes Burkholderia cenocepacia MC0-3   1 1
No Yes Burkholderia cenocepacia AU 1054   2 2
No Yes Burkholderia cenocepacia J2315   3 3
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Variovorax paradoxus B4   1 1
No Yes Variovorax paradoxus EPS   2 2
No Yes Taylorella asinigenitalis 14/45   1 1
No Yes Bordetella pertussis CS   1 1
No Yes Bordetella parapertussis 18323   1 1
No Yes Bordetella parapertussis Bpp5   1 1
No Yes Bordetella bronchiseptica MO149   2 2
No Yes Bordetella bronchiseptica 253   2 2
No Yes Achromobacter xylosoxidans NBRC 15126 = ATCC 27061   1 1
No Yes Nitrosomonas sp. AL212   1 1
No Yes Sulfuricella denitrificans skB26   1 1
No Yes Zymomonas mobilis subsp. mobilis ATCC 29191   1 1
No Yes Zymomonas mobilis subsp. pomaceae ATCC 29192   2 1
No Yes Phaeobacter gallaeciensis DSM 17395   1 1
No Yes Phaeobacter gallaeciensis DSM 26640   1 1
No Yes Acetobacter pasteurianus 386B   1 1
No Yes Acetobacter pasteurianus IFO 3283-12   1 1
No Yes Acetobacter pasteurianus IFO 3283-01-42C   1 1
No Yes Acetobacter pasteurianus IFO 3283-32   1 1
No Yes Acetobacter pasteurianus IFO 3283-26   1 1
No Yes Acetobacter pasteurianus IFO 3283-22   1 1
No Yes Acetobacter pasteurianus IFO 3283-07   1 1
No Yes Acetobacter pasteurianus IFO 3283-03   1 1
No Yes Orientia tsutsugamushi str. Ikeda   1 1
No Yes Rickettsia bellii RML369-C   1 1
No Yes Rickettsia canadensis str. CA410   2 1
No Yes Methylobacterium extorquens DM4   6 2
No Yes Methylobacterium extorquens PA1   4 2
No Yes Brucella ceti TE10759-12   2 1
No Yes Brucella ceti TE28753-12   2 1
No Yes Brucella canis HSK A52141   3 2
No Yes Brucella suis VBI22   3 2
No Yes Brucella suis 1330   3 2
No Yes Brucella suis 1330   3 2
No Yes Brucella melitensis NI   3 2
No Yes Brucella melitensis M5-90   3 2
No Yes Brucella melitensis M28   3 2
No Yes Brucella melitensis bv. 1 str. 16M   3 2
No Yes Brucella abortus A13334   3 2
No Yes Brucella melitensis biovar Abortus 2308   2 1
No Yes Brucella abortus bv. 1 str. 9-941   3 2
No Yes Sinorhizobium fredii USDA 257   2 1
No Yes Sinorhizobium fredii HH103   2 1
No Yes Sinorhizobium meliloti 2011   4 1
No Yes Sinorhizobium meliloti GR4   4 1
No Yes Sinorhizobium meliloti Rm41   4 1
No Yes Sinorhizobium meliloti SM11   4 1
No Yes Sinorhizobium meliloti BL225C   4 2
No Yes Sinorhizobium meliloti 1021   4 1
No Yes Rhizobium etli CFN 42   5 1
No Yes Rhizobium etli bv. mimosae str. Mim1   5 1
No Yes Rhizobium tropici CIAT 899   3 1
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   3 1
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   4 1
No Yes Liberibacter crescens BT-1   2 2
No Yes Candidatus Liberibacter solanacearum CLso-ZC1   1 1
No Yes Candidatus Liberibacter americanus str. Sao Paulo   1 1
No Yes Candidatus Liberibacter asiaticus str. gxpsy   1 1
No Yes Mesorhizobium australicum WSM2073   1 1
No Yes Hyphomicrobium nitrativorans NL23   2 1
No Yes Hyphomicrobium denitrificans 1NES1   1 1
No Yes Oligotropha carboxidovorans OM5   2 1
No Yes Oligotropha carboxidovorans OM5   2 1
No Yes Rhodopseudomonas palustris DX-1   2 2
No Yes Rhodopseudomonas palustris TIE-1   1 1
No Yes Rhodopseudomonas palustris HaA2   1 1
No Yes Rhodopseudomonas palustris BisB5   2 2
No Yes Rhodopseudomonas palustris BisB18   2 1
No Yes Rhodopseudomonas palustris CGA009   1 1
No Yes Bradyrhizobium sp. S23321   2 1
No Yes Bradyrhizobium sp. BTAi1   2 2
No Yes Bradyrhizobium oligotrophicum S58   1 1
No Yes Bradyrhizobium japonicum USDA 6   3 2
No Yes Bartonella australis Aust/NH1   1 1
No Yes Bartonella vinsonii subsp. berkhoffii str. Winnie   2 1
No Yes Bartonella quintana RM-11   1 1
No Yes Mannheimia succiniciproducens MBEL55E   1 1
No Yes Bibersteinia trehalosi USDA-ARS-USMARC-192   2 2
No Yes Aggregatibacter actinomycetemcomitans ANH9381   1 1
No Yes Aggregatibacter actinomycetemcomitans D11S-1   1 1
No Yes Haemophilus somnus 2336   1 1
No Yes Mannheimia haemolytica USMARC_2286   1 1
No Yes Mannheimia haemolytica M42548   1 1
No Yes Mannheimia haemolytica D174   1 1
No Yes Mannheimia haemolytica D171   1 1
No Yes Mannheimia haemolytica D153   1 1
No Yes Mannheimia haemolytica USDA-ARS-USMARC-183   1 1
No Yes Pasteurella multocida 36950   2 2
No Yes Pasteurella multocida subsp. multocida str. HN06   2 2
No Yes Pasteurella multocida subsp. multocida str. Pm70   1 1
No Yes Haemophilus influenzae KR494   1 1
No Yes Haemophilus influenzae F3047   1 1
No Yes Haemophilus influenzae F3031   2 1
No Yes Haemophilus influenzae 10810   2 2
No Yes Haemophilus influenzae 86-028NP   2 1
No Yes Haemophilus influenzae R2866   2 1
No Yes Haemophilus influenzae R2846   1 1
No Yes Haemophilus influenzae Rd KW20   2 2
No Yes Vibrio nigripulchritudo VibrioScope   1 1
No Yes Shewanella sp. MR-7   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea UM4b'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea UM7'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U8'   2 2
No Yes Alteromonas macleodii str. 'Ionian Sea U7'   2 2
No Yes Alteromonas macleodii str. 'Ionian Sea U4'   2 2
No Yes Alteromonas macleodii str. 'Aegean Sea MED64'   2 2
No Yes Alteromonas macleodii str. 'English Channel 615'   2 2
No Yes Alteromonas macleodii AltDE1   1 1
No Yes Alteromonas macleodii str. 'English Channel 673'   1 1
No Yes Alteromonas macleodii str. 'Balearic Sea AD45'   1 1
No Yes Alteromonas macleodii str. 'Black Sea 11'   2 2
No Yes Alteromonas macleodii ATCC 27126   2 2
No Yes Alcanivorax dieselolei B5   2 2
No Yes Stenotrophomonas maltophilia R551-3   1 1
No Yes Xylella fastidiosa subsp. fastidiosa GB514   1 1
No Yes Xylella fastidiosa M12   1 1
No Yes Xylella fastidiosa Temecula1   1 1
No Yes Xylella fastidiosa 9a5c   1 1
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   2 2
No Yes Xanthomonas axonopodis pv. citrumelo F1   2 2
No Yes Xanthomonas oryzae pv. oryzicola BLS256   1 1
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   1 1
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   1 1
No Yes Xanthomonas campestris pv. raphani 756C   1 1
No Yes Xanthomonas campestris pv. campestris str. 8004   1 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   1 1
No Yes Thioflavicoccus mobilis 8321   3 3
No Yes Legionella pneumophila str. Paris   1 1
No Yes Legionella pneumophila str. Lens   1 1
No Yes Legionella pneumophila subsp. pneumophila LPE509   1 1
No Yes Legionella pneumophila subsp. pneumophila str. Thunder Bay   1 1
No Yes Legionella pneumophila subsp. pneumophila str. Philadelphia 1   1 1
No Yes Legionella pneumophila subsp. pneumophila   1 1
No Yes Legionella pneumophila subsp. pneumophila   1 1
No Yes Legionella pneumophila subsp. pneumophila ATCC 43290   1 1
No Yes Legionella pneumophila 2300/99 Alcoy   1 1
No Yes Proteus mirabilis BB2000   1 1
No Yes Morganella morganii subsp. morganii KT   1 1
No Yes Serratia sp. AS13   1 1
No Yes Serratia plymuthica S13   2 2
No Yes Serratia plymuthica 4Rx13   1 1
No Yes Serratia marcescens WW4   1 1
No Yes Serratia liquefaciens ATCC 27592   1 1
No Yes Pantoea ananatis LMG 5342   1 1
No Yes Pantoea ananatis AJ13355   1 1
No Yes Erwinia amylovora CFBP1430   2 2
No Yes Shigella sonnei 53G   1 1
No Yes Klebsiella oxytoca KCTC 1686   2 2
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   1 1
No Yes Enterobacter aerogenes EA1509E   1 1
No Yes Escherichia coli Xuzhou21   1 1
No Yes Escherichia coli ATCC 8739   1 1
No Yes Escherichia coli SMS-3-5   2 2
No Yes Escherichia coli O55:H7 str. RM12579   1 1
No Yes Escherichia coli O55:H7 str. CB9615   1 1
No Yes Escherichia coli O157:H7 str. TW14359   1 1
No Yes Escherichia coli O157:H7 str. EC4115   1 1
No Yes Escherichia coli O157:H7 str. Sakai   1 1
No Yes Escherichia coli O157:H7 str. EDL933   1 1
No Yes Pseudomonas monteilii SB3101   1 1
No Yes Pseudomonas monteilii SB3078   1 1
No Yes Pseudomonas putida H8234   1 1
No Yes Pseudomonas putida HB3267   2 2
No Yes Pseudomonas putida NBRC 14164   1 1
No Yes Pseudomonas putida S16   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Pseudomonas mendocina NK-01   1 1
No Yes Acinetobacter genomosp. 13TU RUH2624   3 2
No Yes Acinetobacter sp. SH024   2 2
No Yes Acinetobacter calcoaceticus ruh2202   2 2
No Yes Acinetobacter baumannii ZW85-1   2 2
No Yes Acinetobacter baumannii TYTH-1   2 2
No Yes Acinetobacter baumannii BJAB0868   2 2
No Yes Acinetobacter baumannii BJAB0715   2 2
No Yes Acinetobacter baumannii BJAB07104   2 2
No Yes Acinetobacter baumannii TCDC-AB0715   2 2
No Yes Acinetobacter baumannii D1279779   2 2
No Yes Acinetobacter baumannii MDR-TJ   2 2
No Yes Acinetobacter baumannii 1656-2   2 2
No Yes Acinetobacter baumannii ATCC 19606   2 2
No Yes Acinetobacter baumannii AB307-0294   2 2
No Yes Acinetobacter baumannii AYE   2 2
No Yes Acinetobacter baumannii SDF   1 1
No Yes Acinetobacter baumannii MDR-ZJ06   2 2
No Yes Acinetobacter baumannii AB0057   2 2
No Yes Acinetobacter baumannii ACICU   2 2
No Yes Acinetobacter junii SH205   2 2
No Yes Acinetobacter johnsonii SH046   1 1
No Yes Acinetobacter lwoffii SH145   1 1
No Yes Methylophaga sp. JAM7   1 1
No Yes Francisella tularensis subsp. mediasiatica FSC147   1 1
No Yes Francisella tularensis subsp. tularensis TIGB03   1 1
No Yes Francisella tularensis subsp. tularensis TI0902   1 1
No Yes Francisella tularensis subsp. tularensis NE061598   1 1
No Yes Francisella tularensis subsp. tularensis FSC198   1 1
No Yes Francisella tularensis subsp. tularensis SCHU S4   1 1
No Yes Francisella cf. novicida Fx1   1 1
No Yes Sulfolobus islandicus HVE10/4   1 1
No Yes Sulfolobus solfataricus 98/2   1 1
No Yes Sulfolobus acidocaldarius SUSAZ   1 1
No Yes Methanomethylovorans hollandica DSM 15978   1 1
No Yes Methanolobus psychrophilus R15   1 1
No Yes Halovivax ruber XH-70   1 1
No Yes Natronococcus occultus SP4   1 1
No Yes Natronomonas moolapensis 8.8.11   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 10 9
No Yes Homo sapiens (NCBI version) Human 6 5
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 7 7
No Yes Heliconius numata (Incomplete)   1 1
No Yes Encephalitozoon cuniculi (endoparasite)   1 1
No Yes Lotus japonicus (Early assembly)   2 2
No Yes Malus x domestica (Duplicate) Apple 5 5
No Yes Ricinus communis (Early assembly) Castor bean 3 3
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   11 11
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 6 6
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 6 6
No Yes Phoenix dactylifera (Early draft) Date palm 2 2
No Yes Mycobacterium tuberculosis H37Rv (Duplicate of ex)   2 2
No Yes Homo sapiens 69_37 Human 5 4
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 5 4
No Yes Gorilla gorilla 69_3.1 Western gorilla 5 4
No Yes Pongo abelii 69_2 Sumatran orangutan 3 2
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 5 4
No Yes Macaca mulatta 69_1 Rhesus monkey 5 4
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 6 5
No Yes Otolemur garnettii 69_3 Small-eared galago 5 4
No Yes Microcebus murinus 69_1 Gray mouse lemur 5 4
No Yes Rattus norvegicus 69_3.4 Norway rat 7 5
No Yes Mus musculus 69_38 House mouse 7 7
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 4 4
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 3 3
No Yes Cavia porcellus 69_3 Domestic guinea pig 4 4
No Yes Oryctolagus cuniculus 69_2 Rabbit 7 5
No Yes Ochotona princeps 69 American pika 3 3
No Yes Sus scrofa 69_10.2 Pig 5 4
No Yes Bos taurus 69_3.1 Cattle 5 4
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 5 4
No Yes Mustela putorius furo 69_1.0 Domestic ferret 5 5
No Yes Ailuropoda melanoleuca 69_1 Giant panda 4 4
No Yes Canis familiaris 69_3.1 Dog 5 5
No Yes Felis catus 69 Domestic cat 4 3
No Yes Equus caballus 69_2 Horse 3 3
No Yes Myotis lucifugus 69_2.0 Little brown bat 2 2
No Yes Pteropus vampyrus 69_1 Large flying fox 4 3
No Yes Sorex araneus 69_1 European shrew 3 2
No Yes Erinaceus europaeus 69 Western European hedgehog 2 1
No Yes Procavia capensis 69_1 Cape rock hyrax 2 2
No Yes Loxodonta africana 69_3 African savanna elephant 3 3
No Yes Echinops telfairi 69 Small Madagascar hedgehog 4 3
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 4 4
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 1 1
No Yes Macropus eugenii 69_1.0 Tammar wallaby 3 3
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 7 6
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 4 3
No Yes Ornithorhynchus anatinus 69_5 Platypus 4 2
No Yes Meleagris gallopavo 69_2 Turkey 5 4
No Yes Gallus gallus 69_2 Chicken 5 4
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 2 2
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 6 4
No Yes Anolis carolinensis 69_2.0 Green anole 4 3
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 8 6
No Yes Latimeria chalumnae 69_1 Coelacanth 5 4
No Yes Gadus morhua 69_1 Atlantic cod 8 8
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 6 6
No Yes Takifugu rubripes 69_4 Torafugu 10 10
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 11 11
No Yes Oryzias latipes 69_1 Japanese medaka 11 11
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 10 10
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 10 10
No Yes Danio rerio 69_9 Zebrafish 15 14
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 2 2
No Yes Ciona intestinalis 69 Vase tunicate 1 1
No Yes Caenorhabditis elegans 69_215 Roundworm 3 2
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 1 1
No Yes Arabidopsis thaliana 10 Thale cress 9 9
No Yes 1_050719N (meta-genome)   4 4
No Yes 1_Upper_euphotic (meta-genome)   1 1
No Yes 2_050719S (meta-genome)   13 13
No Yes 2_Base_of_chrolophyll_max (meta-genome)   1 1
No Yes 3_050719R (meta-genome)   13 13
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   11 11
No Yes 4_Deep_abyss (meta-genome)   1 1
No Yes 5_050719P (meta-genome)   6 6
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   5 5
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   4 4
No Yes Bath Hot Springs, filamentous community (meta-genome)   4 4
No Yes Bath Hot Springs, planktonic community (meta-genome)   10 9
No Yes Combined (meta-genome)   5 5
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   26 26
No Yes Dump top (Dump top) (meta-genome)   21 21
No Yes Endophytic microbiome from Rice (meta-genome)   4 4
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   3 3
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   2 2
No Yes Fungus garden combined (combined) (meta-genome)   5 5
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   4 4
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   4 4
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   4 4
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   2 2
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   18 17
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   18 18
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   13 13
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   7 7
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   10 10
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)   8 8
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP2 from Nymph Lake 10 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   7 7
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome)   8 8
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   8 8
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   13 13
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   2 2
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   4 4
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   3 3
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   5 5
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   19 19
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   7 7
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   5 5
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   5 5
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   2 2
No Yes Mouse Gut Community lean2 (meta-genome)   2 2
No Yes NCBI 2017_08 genome   56069 51926
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   9 9
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   1 1
No Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)   2 2
No Yes Protozoadb 2010_08 (Protozoadb)   60 58
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   8 8
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   9 9
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   20 19
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   3 3
No Yes Sludge/US, Phrap Assembly (meta-genome)   5 5
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   12 11
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   14 14
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   23 23
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   10 10
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   20 20
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   13 13
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   10 10
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   1026 902
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   1 1
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   3 3
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Termite Protist Endosymbiont Community (meta-genome)   3 3
No Yes Uniprot 2018_03 genome   17273 15406
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   1 1
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   9 9
No Yes Global Ocean Sampling Expedition (GOS)   185 179
No Yes NCBI plasmid sequences (Plasmids)   120 117
No Yes NCBI viral sequences (Viral)   32 32
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   32 30
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   30 30
No Yes TargetDB (Targets)   36 34
No Yes UniProt viral sequences (Viral)   21 21

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