SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


Ribonuclease domain of colicin E3 superfamily domain assignments
in
Cellulophaga algicola DSM 14237

Network of domain occurrence in all genomes



No domain assignments for these genomes.


Add assignments from groups of genomes

View all assignments containing a Ribonuclease domain of colicin E3 domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   3539 3539
No Yes Adineta vaga   2 2
No Yes Pseudanabaena sp. PCC 7367   1 1
No Yes Kribbella flavida DSM 17836   1 1
No Yes Segniliparus rotundus DSM 44985   1 1
No Yes Bacillus atrophaeus 1942   1 1
No Yes Bacillus pumilus SAFR-032   1 1
No Yes Chromobacterium violaceum ATCC 12472   1 1
No Yes Verminephrobacter eiseniae EF01-2   1 1
No Yes Rhodopseudomonas palustris BisA53   1 1
No Yes Gallibacterium anatis UMN179   1 1
No Yes Xenorhabdus nematophila ATCC 19061   1 1
No Yes Rahnella sp. Y9602   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Erwinia amylovora ATCC 49946   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Pseudomonas sp. TKP   1 1
No Yes Pseudomonas fluorescens SBW25   1 1
No Yes Stanieria cyanosphaera PCC 7437   1 1
No Yes Bacillus amyloliquefaciens LFB112   1 1
No Yes Bacillus licheniformis 9945A   1 1
No Yes Bacillus cereus subsp. cytotoxis NVH 391-98   1 1
No Yes Treponema pedis str. T A4   1 1
No Yes Haemophilus somnus 2336   1 1
No Yes Rahnella aquatilis HX2   1 1
No Yes Erwinia amylovora CFBP1430   1 1
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   1 1
No Yes Klebsiella pneumoniae JM45   1 1
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   1 1
No Yes Enterobacter aerogenes EA1509E   1 1
No Yes Pseudomonas putida NBRC 14164   1 1
No Yes Pseudomonas putida S16   1 1
No Yes Pseudomonas poae RE*1-1-14   1 1
No Yes Pseudomonas fluorescens F113   2 2
No Yes Pseudomonas fluorescens A506   1 1
No Yes Pseudomonas fluorescens R124   1 1
No Yes Pseudomonas fluorescens Pf0-1   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   1 1
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   2 2
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   3 3
No Yes NCBI 2017_08 genome   2759 2759
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   10 10
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   9 9
No Yes Uniprot 2018_03 genome   638 636
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI plasmid sequences (Plasmids)   11 11
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   8 8
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   20 20
No Yes The Salmonella enterica Pan-genome (meta-genome)   1 1

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]