SUPERFAMILY 1.75 HMM library and genome assignments server

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SNARE-like superfamily domain assignments
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Vibrio fischeri ES114


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Select to display   Genome       Domains   Proteins
No Yes ALL   82438 82438
No Yes Homo sapiens 76_38 Human 169 168
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 29 29
No Yes Gorilla gorilla 76_3.1 Western gorilla 32 32
No Yes Pongo abelii 76_2 Sumatran orangutan 31 31
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 27 27
No Yes Papio anubis 76 Olive baboon 28 28
No Yes Macaca mulatta 76_1 Rhesus monkey 49 49
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 60 60
No Yes Otolemur garnettii 76_3 Small-eared galago 30 30
No Yes Microcebus murinus 76_1 Gray mouse lemur 22 22
No Yes Rattus norvegicus 76_5.0 Norway rat 29 29
No Yes Mus musculus 76_38 House mouse 54 54
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 23 23
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 27 27
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 38 37
No Yes Cavia porcellus 76_3 Domestic guinea pig 29 29
No Yes Oryctolagus cuniculus 76_2 Rabbit 33 33
No Yes Ochotona princeps 76 American pika 24 23
No Yes Tupaia belangeri 76 Northern tree shrew 20 20
No Yes Sus scrofa 76_10.2 Pig 29 29
No Yes Bos taurus 76_3.1 Cattle 25 25
No Yes Ovis aries 76_3.1 Sheep 32 32
No Yes Vicugna pacos 76_1 Alpaca 20 19
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 23 23
No Yes Mustela putorius furo 76_1.0 Domestic ferret 29 29
No Yes Ailuropoda melanoleuca 76_1 Giant panda 28 28
No Yes Canis familiaris 76_3.1 Dog 37 37
No Yes Felis catus 76_6.2 Domestic cat 28 28
No Yes Equus caballus 76_2 Horse 26 26
No Yes Myotis lucifugus 76_2.0 Little brown bat 29 29
No Yes Pteropus vampyrus 76_1 Large flying fox 24 24
No Yes Sorex araneus 76_1 European shrew 22 21
No Yes Erinaceus europaeus 76 Western European hedgehog 20 20
No Yes Procavia capensis 76_1 Cape rock hyrax 24 23
No Yes Loxodonta africana 76_3 African savanna elephant 30 30
No Yes Echinops telfairi 76 Small Madagascar hedgehog 19 19
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 31 31
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 18 16
No Yes Macropus eugenii 76_1.0 Tammar wallaby 24 23
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 28 28
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 29 29
No Yes Ornithorhynchus anatinus 76_5 Platypus 19 19
No Yes Saccoglossus kowalevskii v3.0   22 22
No Yes Petromyzon marinus 76_7.0 Sea lamprey 15 15
No Yes Meleagris gallopavo 76_2 Turkey 24 24
No Yes Gallus gallus 76_4 Chicken 21 20
No Yes Anas platyrhynchos 76_1.0 Mallard 19 19
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 19 19
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 21 21
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 28 28
No Yes Anolis carolinensis 76_2.0 Green anole 26 26
No Yes Xenopus laevis African clawed frog 71 71
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 34 34
No Yes Latimeria chalumnae 76_1 Coelacanth 32 32
No Yes Lepisosteus oculatus 76 Spotted gar 34 34
No Yes Gadus morhua 76_1 Atlantic cod 30 30
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 29 29
No Yes Takifugu rubripes 76_4 Torafugu 44 44
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 48 48
No Yes Oryzias latipes 76_1 Japanese medaka 35 35
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 30 30
No Yes Poecilia formosa 76 Amazon molly 36 36
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 35 35
No Yes Astyanax mexicanus 76 Mexican tetra 30 30
No Yes Danio rerio 76_9 Zebrafish 62 62
No Yes Oikopleura dioica   21 21
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 19 19
No Yes Ciona intestinalis 76 Vase tunicate 16 16
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 23 23
No Yes Adineta vaga   57 57
No Yes Octopus bimaculoides 280   29 29
No Yes Crassostrea gigas 22 Pacific oyster 23 22
No Yes Lottia gigantea Owl limpet 16 16
No Yes Helobdella robusta   23 23
No Yes Capitella sp. I   24 24
No Yes Danaus plexippus OGS1.0 Monarch butterfly 18 18
No Yes Heliconius melpomene Postman butterfly 16 16
No Yes Bombyx mori Domestic silkworm 13 13
No Yes Nasonia vitripennis Jewel wasp 15 15
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 34 34
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 16 16
No Yes Linepithema humile v1.1 Argentine ant 16 16
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 15 15
No Yes Solenopsis invicta v.2.2.3 Red fire ant 11 11
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 16 16
No Yes Atta cephalotes v1.1   16 16
No Yes Camponotus floridanus v3.3 Florida carpenter ant 16 16
No Yes Lucilia cuprina Australian sheep blowfly 16 16
No Yes Drosophila grimshawi 1.3   17 17
No Yes Drosophila willistoni 1.3   16 16
No Yes Drosophila pseudoobscura 2.13   16 16
No Yes Drosophila persimilis 1.3   16 16
No Yes Drosophila suzukii   18 16
No Yes Drosophila yakuba 1.3   17 17
No Yes Drosophila simulans 1.3   14 14
No Yes Drosophila sechellia 1.3   16 16
No Yes Drosophila melanogaster 76_5 Fruit fly 25 25
No Yes Drosophila erecta 1.3   16 16
No Yes Drosophila ananassae 1.3   16 16
No Yes Drosophila virilis 1.2   16 16
No Yes Drosophila mojavensis 1.3   16 16
No Yes Megaselia scalaris 22   6 6
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 25 25
No Yes Culex pipiens quinquefasciatus Southern house mosquito 16 16
No Yes Anopheles darlingi 22 American malaria mosquito 13 13
No Yes Anopheles gambiae 49_3j African malaria mosquito 16 16
No Yes Tribolium castaneum 3.0 Red flour beetle 17 17
No Yes Pediculus humanus corporis (Early assembly) Human body louse 16 16
No Yes Acyrthosiphon pisum Pea aphid 22 22
No Yes Rhodnius prolixus 22   16 16
No Yes Daphnia pulex Common water flea 17 17
No Yes Strigamia maritima 22   17 17
No Yes Sarcoptes scabiei   14 14
No Yes Tetranychus urticae Two-spotted spider mite 19 19
No Yes Ixodes scapularis (Preliminary) Black-legged tick 16 16
No Yes Pristionchus pacificus   20 20
No Yes Meloidogyne incognita Southern root-knot nematode 24 24
No Yes Meloidogyne hapla   17 17
No Yes Onchocerca volvulus 22   16 16
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 21 21
No Yes Caenorhabditis japonica   17 16
No Yes Caenorhabditis brenneri   21 21
No Yes Caenorhabditis remanei   16 16
No Yes Caenorhabditis elegans 76_235 Roundworm 19 19
No Yes Caenorhabditis briggsae 2   16 16
No Yes Trichinella spiralis 22   13 13
No Yes Hymenolepis microstoma   15 15
No Yes Echinococcus multilocularis   19 19
No Yes Echinococcus granulosus   20 20
No Yes Taenia solium Pork tapeworm 16 16
No Yes Schistosoma mansoni   22 22
No Yes Mnemiopsis leidyi Sea walnut 19 19
No Yes Thelohanellus kitauei   9 9
No Yes Acropora digitifera v1.0   18 18
No Yes Nematostella vectensis 1.0 Starlet sea anemone 22 22
No Yes Hydra vulgaris   20 20
No Yes Amphimedon queenslandica   29 29
No Yes Trichoplax adhaerens   19 19
No Yes Proterospongia sp. ATCC 50818   18 18
No Yes Monosiga brevicollis   16 16
No Yes Sphaeroforma arctica JP610   15 15
No Yes Capsaspora owczarzaki ATCC 30864   17 17
No Yes Conidiobolus coronatus NRRL28638 v1.0   16 16
No Yes Mortierella verticillata NRRL 6337   18 18
No Yes Phycomyces blakesleeanus   18 18
No Yes Rhizopus oryzae RA 99-880   16 16
No Yes Mucor circinelloides   18 18
No Yes Rhizomucor miehei CAU432   15 15
No Yes Malassezia globosa CBS 7966   26 24
No Yes Sporisorium reilianum 22   16 16
No Yes Ustilago maydis   13 13
No Yes Mixia osmundae IAM 14324 v1.0   16 16
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   15 15
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   17 16
No Yes Melampsora laricis-populina   17 17
No Yes Rhodotorula graminis WP1 v1.0   16 16
No Yes Sporobolomyces roseus IAM 13481   17 17
No Yes Microbotryum violaceum 22   16 16
No Yes Wallemia sebi v1.0   15 15
No Yes Sphaerobolus stellatus v1.0   16 16
No Yes Piloderma croceum F 1598 v1.0   16 16
No Yes Serpula lacrymans var. lacrymans S7.9   14 14
No Yes Coniophora puteana   14 14
No Yes Hydnomerulius pinastri v2.0   17 17
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   16 16
No Yes Pisolithus microcarpus 441 v1.0   14 14
No Yes Pisolithus tinctorius Marx 270 v1.0   15 15
No Yes Scleroderma citrinum Foug A v1.0   17 17
No Yes Coprinopsis cinerea okayama7 130 v3   17 17
No Yes Pleurotus ostreatus Oyster mushroom 16 16
No Yes Amanita thiersii Skay4041 v1.0   17 17
No Yes Amanita muscaria Koide v1.0 Fly agaric 17 17
No Yes Galerina marginata v1.0   17 17
No Yes Hebeloma cylindrosporum h7 v2.0   17 17
No Yes Laccaria bicolor S238N-H82   16 16
No Yes Agaricus bisporus var. bisporus   15 15
No Yes Schizophyllum commune   24 24
No Yes Stereum hirsutum FP-91666 SS1 v1.0   16 16
No Yes Heterobasidion annosum   18 18
No Yes Gloeophyllum trabeumv1.0   16 16
No Yes Punctularia strigosozonata v1.0   17 17
No Yes Sebacina vermifera MAFF 305830 v1.0   16 16
No Yes Fomitiporia mediterranea v1.0   16 16
No Yes Tulasnella calospora AL13/4D v1.0   17 17
No Yes Postia placenta   21 21
No Yes Wolfiporia cocos MD-104 SS10 v1.0   17 17
No Yes Fomitopsis pinicolav1.0   16 16
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   16 16
No Yes Phanerochaete chrysosporium RP-78 2.1   14 14
No Yes Dichomitus squalens   16 16
No Yes Trametes versicolor v1.0   16 16
No Yes Tremella mesenterica Witches' butter 16 16
No Yes Daldinia eschscholzii EC12 v1.0   16 16
No Yes Apiospora montagnei NRRL 25634 v1.0   16 16
No Yes Magnaporthe poae ATCC 64411 22   11 11
No Yes Magnaporthe grisea 70-15   16 16
No Yes Podospora anserina   16 16
No Yes Sporotrichum thermophile ATCC 42464   16 16
No Yes Thielavia terrestris NRRL 8126   14 14
No Yes Chaetomium globosum CBS 148.51   15 15
No Yes Neurospora tetrasperma   15 15
No Yes Neurospora discreta FGSC 8579   15 15
No Yes Neurospora crassa OR74A   16 16
No Yes Cryphonectria parasitica Chestnut blight fungus 16 16
No Yes Verticillium albo-atrum VaMs.102   13 13
No Yes Verticillium dahliae VdLs.17   16 16
No Yes Acremonium alcalophilumv 1.0   16 16
No Yes Glomerella graminicola 22   16 16
No Yes Fusarium graminearum   16 16
No Yes Nectria haematococca mpVI   17 17
No Yes Fusarium oxysporum f. sp. lycopersici 4286   16 16
No Yes Fusarium verticillioides 7600   14 14
No Yes Trichoderma asperellum CBS 433.97 v1.0   16 16
No Yes Trichoderma atroviride   16 16
No Yes Trichoderma citrinoviride v1.0   13 13
No Yes Trichoderma reesei 1.2   16 16
No Yes Trichoderma virens Gv29-8   16 16
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   16 16
No Yes Trichoderma harzianum CBS 226.95 v1.0   16 16
No Yes Amorphotheca resinae v1.0 Creosote fungus 16 16
No Yes Botrytis cinerea B05.10   16 16
No Yes Sclerotinia sclerotiorum   15 15
No Yes Blumeria graminis 22   15 15
No Yes Didymella exigua CBS 183.55 v1.0   15 15
No Yes Leptosphaeria maculans 22   16 16
No Yes Setosphaeria turcica v1.0   17 16
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   16 16
No Yes Cochliobolus victoriae FI3 v1.0   16 16
No Yes Cochliobolus carbonum 26-R-13 v1.0   16 16
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 16 16
No Yes Alternaria brassicicola   14 14
No Yes Cochliobolus lunatus m118 v2.0   16 16
No Yes Pyrenophora teres f. teres 22   16 16
No Yes Pyrenophora tritici-repentis   16 16
No Yes Stagonospora nodorum   16 16
No Yes Mycosphaerella graminicola IPO323   16 16
No Yes Zasmidium cellare ATCC 36951 v1.0   16 16
No Yes Dothistroma septosporum   16 16
No Yes Septoria musiva v1.0   16 16
No Yes Mycosphaerella fijiensis CIRAD86   14 14
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   16 16
No Yes Paracoccidioides brasiliensis Pb18   15 15
No Yes Coccidioides posadasii RMSCC 3488   16 16
No Yes Coccidioides immitis RS   16 16
No Yes Ajellomyces dermatitidis SLH14081   15 15
No Yes Histoplasma capsulatum class NAmI strain WU24   14 14
No Yes Microsporum canis CBS 113480   16 16
No Yes Trichophyton equinum CBS 127.97   15 15
No Yes Trichophyton verrucosum HKI 0517   10 10
No Yes Arthroderma benhamiae CBS 112371   11 11
No Yes Trichophyton tonsurans CBS 112818   16 16
No Yes Trichophyton rubrum CBS 118892   16 16
No Yes Uncinocarpus reesii 1704   14 14
No Yes Aspergillus zonatus v1.0   15 15
No Yes Penicillium chrysogenum Wisconsin 54-1255   16 16
No Yes Penicillium chrysogenum v1.0   16 16
No Yes Aspergillus acidus v1.0   15 15
No Yes Aspergillus fumigatus Af293   15 15
No Yes Aspergillus brasiliensis v1.0   16 16
No Yes Aspergillus nidulans FGSC A4   14 14
No Yes Aspergillus sydowii v1.0   16 16
No Yes Aspergillus versicolor v1.0   16 16
No Yes Aspergillus glaucus   16 16
No Yes Aspergillus carbonarius ITEM 5010   16 16
No Yes Neosartorya fischeri NRRL 181   15 15
No Yes Aspergillus terreus NIH2624   15 15
No Yes Aspergillus tubingensis v1.0   16 16
No Yes Aspergillus wentii v1.0   16 16
No Yes Aspergillus oryzae RIB40   11 11
No Yes Aspergillus niger 22   15 15
No Yes Aspergillus niger ATCC 1015   10 10
No Yes Aspergillus flavus NRRL3357   15 15
No Yes Aspergillus clavatus NRRL 1   16 16
No Yes Penicillium marneffei ATCC 18224   19 19
No Yes Tuber melanosporum Mel28 22   15 15
No Yes Tuber melanosporum Vittad Perigord truffle 17 17
No Yes Hansenula polymorpha v2.0   15 15
No Yes Dekkera bruxellensis CBS 2499 v2.0   15 15
No Yes Pichia membranifaciensv1.0   16 16
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   15 15
No Yes Candida dubliniensis CD36   15 15
No Yes Candida tropicalis MYA-3404   14 14
No Yes Candida parapsilosis   14 14
No Yes Candida albicans SC5314   15 15
No Yes Lodderomyces elongisporus NRRL YB-4239   15 15
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   15 15
No Yes Pichia stipitis CBS 6054   14 14
No Yes Candida guilliermondii ATCC 6260   15 15
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   15 15
No Yes Debaromyces hansenii   15 15
No Yes Wickerhamomyces anomalus   15 15
No Yes Pichia pastoris GS115   16 16
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   11 11
No Yes Yarrowia lipolytica CLIB122   16 16
No Yes Candida lusitaniae ATCC 42720   14 14
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   15 15
No Yes Vanderwaltozyma polyspora DSM 70294   15 15
No Yes Candida glabrata CBS138   15 15
No Yes Kluyveromyces thermotolerans CBS 6340   16 16
No Yes Lachancea kluyveri   16 16
No Yes Kluyveromyces waltii   15 15
No Yes Ashbya gossypii ATCC 10895   16 16
No Yes Zygosaccharomyces rouxii   14 14
No Yes Saccharomyces mikatae MIT   13 13
No Yes Saccharomyces paradoxus MIT   14 14
No Yes Saccharomyces cerevisiae 76 Baker's yeast 15 15
No Yes Saccharomyces bayanus MIT   15 15
No Yes Kluyveromyces lactis   16 16
No Yes Schizosaccharomyces cryophilus OY26 22   15 15
No Yes Schizosaccharomyces octosporus yFS286   15 15
No Yes Schizosaccharomyces japonicus yFS275   15 15
No Yes Schizosaccharomyces pombe Fission yeast 15 15
No Yes Catenaria anguillulae PL171 v1.0   16 16
No Yes Allomyces macrogynus ATCC 38327   35 33
No Yes Spizellomyces punctatus DAOM BR117   17 17
No Yes Dictyostelium discoideum   26 26
No Yes Dictyostelium purpureum   22 22
No Yes Entamoeba dispar 1.2   23 23
No Yes Entamoeba invadens 1.2   23 23
No Yes Entamoeba histolytica 1   23 23
No Yes Selaginella moellendorffii   52 52
No Yes Pinus taeda Loblolly pine 28 28
No Yes Picea abies Norway spruce 18 18
No Yes Eucalyptus grandis v201 Rose gum 62 62
No Yes Theobroma cacao B97-61/B2 v1 Cacao 38 38
No Yes Gossypium raimondii v221   182 182
No Yes Citrus clementina v165   42 42
No Yes Citrus sinensis v154 Sweet orange 76 76
No Yes Thellungiella halophila v173   54 54
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 69 69
No Yes Capsella rubella v183   42 42
No Yes Arabidopsis lyrata Lyrate rockcress 39 39
No Yes Arabidopsis thaliana 10 Thale cress 50 50
No Yes Carica papaya Papaya 33 33
No Yes Medicago truncatula Barrel medic 66 65
No Yes Phaseolus vulgaris v186 French bean 53 53
No Yes Glycine max v109 Soybean 127 127
No Yes Cucumis sativus v122 Cucumber 49 49
No Yes Fragaria vesca Wild strawberry 34 34
No Yes Malus domestica v196 Apple 105 92
No Yes Prunus persica v139 Peach 37 37
No Yes Linum usitatissimum v200 Flax 67 66
No Yes Manihot esculenta v147 Cassava 65 65
No Yes Populus trichocarpa v156 Black cottonwood 57 57
No Yes Vitis vinifera Wine grape 36 36
No Yes Mimulus guttatus v140 Spotted monkey flower 41 40
No Yes Solanum lycopersicum v.2.3 Tomato 41 41
No Yes Solanum tuberosum Potato 57 56
No Yes Actinidia chinensis Hongyang   57 56
No Yes Aquilegia coerulea v195   70 69
No Yes Triticum urartu 22   33 33
No Yes Triticum aestivum 22 Bread wheat 91 91
No Yes Aegilops tauschii 22   31 31
No Yes Brachypodium distachyon Stiff brome 50 50
No Yes Oryza barthii 22 African wild rice 67 63
No Yes Oryza meridionalis 22   68 62
No Yes Oryza glumaepatula 22   60 60
No Yes Oryza glaberrima African rice 39 39
No Yes Oryza punctata 22   67 66
No Yes Oryza nivara 22   61 59
No Yes Oryza brachyantha 22 Malo sina 34 33
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 76 76
No Yes Oryza sativa v193 Rice 73 73
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 37 37
No Yes Panicum virgatum v202 Switchgrass 88 88
No Yes Setaria italica v164 Foxtail millet 57 57
No Yes Zea mays subsp. mays Maize 106 106
No Yes Zea mays v181 Maize 112 112
No Yes Sorghum bicolor Sorghum 38 37
No Yes Musa balbisiana Balbis banana 50 48
No Yes Musa acuminata 22 Wild Malaysian banana 52 52
No Yes Amborella trichopoda 22   31 31
No Yes Physcomitrella patens   44 44
No Yes Coccomyxa subellipsoidea sp. C-169 v2   19 19
No Yes Asterochloris sp. Cgr/DA1pho v1.0   18 18
No Yes Chlorella variabilis sp. NC64A   14 14
No Yes Chlorella vulgaris   19 19
No Yes Volvox carteri f. nagariensis   20 20
No Yes Volvox carteri v199   21 21
No Yes Chlamydomonas reinhardtii 4.0   21 21
No Yes Ostreococcus sp. RCC809   17 17
No Yes Ostreococcus lucimarinus CCE9901   16 16
No Yes Ostreococcus tauri   17 17
No Yes Bathycoccus prasinos   17 17
No Yes Micromonas sp. RCC299   20 20
No Yes Micromonas pusilla CCMP1545 v3.0   18 18
No Yes Cyanidioschyzon merolae strain 10D 22   14 14
No Yes Cyanidioschyzon merolae   14 14
No Yes Porphyridium purpureum 02_2012   16 16
No Yes Thecamonas trahens ATCC 50062   20 20
No Yes Bigelowiella natans CCMP2755 22   22 22
No Yes Giardia lamblia 2.3   11 11
No Yes Cyanophora paradoxa   18 18
No Yes Leishmania mexicana 2.4   15 15
No Yes Leishmania major strain Friedlin   14 14
No Yes Leishmania infantum JPCM5 2.4   14 14
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   15 15
No Yes Trypanosoma vivax   13 13
No Yes Trypanosoma cruzi strain CL Brener   19 18
No Yes Trypanosoma congolense 2.4   15 15
No Yes Trypanosoma brucei gambiense v4.1   17 17
No Yes Trypanosoma brucei TREU927 v4.1   17 17
No Yes Ectocarpus siliculosus   22 22
No Yes Aureococcus anophagefferens   23 23
No Yes Albugo laibachii 22   21 21
No Yes Pythium iwayamai DAOM BR242034 22   22 22
No Yes Pythium arrhenomanes ATCC 12531 22   19 19
No Yes Pythium ultimum v1.7-2   22 22
No Yes Pythium aphanidermatum DAOM BR444 22   21 21
No Yes Pythium irregulare DAOM BR486 22   22 22
No Yes Pythium vexans DAOM BR484 22   25 24
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 23 23
No Yes Phytophthora sojae 1.1   21 21
No Yes Phytophthora infestans T30-4   22 22
No Yes Phytophthora capsici   19 19
No Yes Hyaloperonospora arabidopsidis 22   21 21
No Yes Phaeodactylum tricornutumCCAP 1055/1   21 21
No Yes Fragilariopsis cylindrus   32 32
No Yes Thalassiosira pseudonana CCMP1335   19 19
No Yes Perkinsus marinus ATCC 50983   36 36
No Yes Paramecium tetraurelia   47 47
No Yes Tetrahymena thermophila SB210 1   29 29
No Yes Ichthyophthirius multifiliis strain G5   19 19
No Yes Cryptosporidium hominis   8 8
No Yes Cryptosporidium muris   14 14
No Yes Cryptosporidium parvum Iowa II   14 14
No Yes Neospora caninum   20 20
No Yes Toxoplasma gondii VEG   18 18
No Yes Toxoplasma gondii ME49   20 20
No Yes Toxoplasma gondii GT1   20 20
No Yes Babesia bovis T2Bo   34 34
No Yes Theileria parva   13 13
No Yes Theileria annulata   16 16
No Yes Plasmodium falciparum 3D7   19 19
No Yes Plasmodium vivax SaI-1 7.0   19 19
No Yes Plasmodium knowlesi strain H   19 19
No Yes Plasmodium yoelii ssp. yoelii 1   17 17
No Yes Plasmodium chabaudi   19 19
No Yes Plasmodium berghei ANKA   19 19
No Yes Symbiodinium minutum clade B1 v1.2   23 23
No Yes Naegleria gruberi   26 26
No Yes Trichomonas vaginalis   45 45
No Yes Guillardia theta CCMP2712 v1.0   19 19
No Yes Emiliania huxleyi CCMP1516   24 24
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 79 79
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 21 21
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 19 19
No Yes Ascaris suum Victoria/Ghent Pig roundworm 14 14
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 16 16
No Yes Cryptococcus neoformans var. grubii H99   16 16
No Yes Cryptococcus neoformans B-3501A   17 17
No Yes Cryptococcus neoformans JEC21   15 15
No Yes Paracoccidioides brasiliensis Pb01   15 15
No Yes Paracoccidioides brasiliensis Pb03   14 14
No Yes Coccidioides posadasii str. Silveira   16 16
No Yes Coccidioides immitis RMSCC 3703   16 16
No Yes Coccidioides immitis RMSCC 2394   15 15
No Yes Coccidioides immitis H538.4   14 14
No Yes Ajellomyces dermatitidis ER-3   15 15
No Yes Histoplasma capsulatum H143   15 15
No Yes Histoplasma capsulatum H88   15 15
No Yes Histoplasma capsulatum G186AR   15 15
No Yes Aspergillus fumigatus A1163   16 16
No Yes Candida albicans WO-1   15 15
No Yes Saccharomyces cerevisiae UC5   15 15
No Yes Saccharomyces cerevisiae PW5   14 14
No Yes Saccharomyces cerevisiae FL100   11 11
No Yes Saccharomyces cerevisiae CLIB382   2 2
No Yes Saccharomyces cerevisiae CLIB324   10 10
No Yes Saccharomyces cerevisiae CBS7960   12 12
No Yes Saccharomyces cerevisiae YJM269   12 12
No Yes Saccharomyces cerevisiae T7   15 15
No Yes Saccharomyces cerevisiae FostersB   14 14
No Yes Saccharomyces cerevisiae FostersO   12 12
No Yes Saccharomyces cerevisiae VL3   12 12
No Yes Saccharomyces cerevisiae Vin13   13 13
No Yes Saccharomyces cerevisiae LalvinQA23   13 13
No Yes Saccharomyces cerevisiae AWRI796   15 15
No Yes Saccharomyces cerevisiae Sigma1278b   15 15
No Yes Saccharomyces cerevisiae W303   15 15
No Yes Saccharomyces cerevisiae JAY291   15 15
No Yes Saccharomyces cerevisiae AWRI1631   13 13
No Yes Saccharomyces cerevisiae YPS163   5 5
No Yes Saccharomyces cerevisiae M22   8 8
No Yes Saccharomyces cerevisiae T73   9 9
No Yes Saccharomyces cerevisiae CLIB215   14 14
No Yes Saccharomyces cerevisiae Y10   5 5
No Yes Saccharomyces cerevisiae YJM789   15 15
No Yes Saccharomyces cerevisiae YJM789   15 15
No Yes Saccharomyces cerevisiae RM11-1a   15 15
No Yes Saccharomyces cerevisiae RM11-1a   15 15
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 15 15
No Yes Schizosaccharomyces pombe 972h-   15 15
No Yes Batrachochytrium dendrobatidis JEL423   20 20
No Yes Batrachochytrium dendrobatidis JAM81   22 22
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 38 37
No Yes Hordeum vulgare 22 Domesticated barley 52 52
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 42 40
No Yes Trypanosoma brucei Lister 427 v4.1   17 17
No Yes Neospora caninum Nc-Liverpool 6.2   20 20
No Yes Plasmodium falciparum HB3   19 19
No Yes Plasmodium falciparum Dd2   12 12
No Yes Homo sapiens 75_37 (old version GRC) Human 180 179
No Yes Homo sapiens (NCBI version) Human 43 43
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 28 28
No Yes Heliconius numata (Incomplete)   16 16
No Yes Loa loa v3.3 (Request) Eye worm 16 16
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 19 19
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 16 16
No Yes Moniliophthora perniciosa FA553 (Genome survey)   7 7
No Yes Encephalitozoon intestinalis (endoparasite)   6 6
No Yes Encephalitozoon cuniculi (endoparasite)   6 6
No Yes Picea sitchensis (Incomplete) Sitka spruce 9 9
No Yes Lotus japonicus (Early assembly)   37 37
No Yes Malus x domestica (Duplicate) Apple 105 92
No Yes Ricinus communis (Early assembly) Castor bean 30 30
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   84 80
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 41 41
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 41 41
No Yes Phoenix dactylifera (Early draft) Date palm 26 26
No Yes Homo sapiens 69_37 Human 29 29
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 26 26
No Yes Gorilla gorilla 69_3.1 Western gorilla 27 27
No Yes Pongo abelii 69_2 Sumatran orangutan 28 28
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 25 25
No Yes Macaca mulatta 69_1 Rhesus monkey 31 31
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 29 29
No Yes Otolemur garnettii 69_3 Small-eared galago 29 29
No Yes Microcebus murinus 69_1 Gray mouse lemur 22 22
No Yes Rattus norvegicus 69_3.4 Norway rat 29 29
No Yes Mus musculus 69_38 House mouse 28 28
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 23 23
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 27 27
No Yes Cavia porcellus 69_3 Domestic guinea pig 28 28
No Yes Oryctolagus cuniculus 69_2 Rabbit 30 30
No Yes Ochotona princeps 69 American pika 24 23
No Yes Tupaia belangeri 69 Northern tree shrew 20 20
No Yes Sus scrofa 69_10.2 Pig 24 24
No Yes Bos taurus 69_3.1 Cattle 25 25
No Yes Vicugna pacos 69_1 Alpaca 20 19
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 23 23
No Yes Mustela putorius furo 69_1.0 Domestic ferret 29 29
No Yes Ailuropoda melanoleuca 69_1 Giant panda 26 26
No Yes Canis familiaris 69_3.1 Dog 28 28
No Yes Felis catus 69 Domestic cat 19 19
No Yes Equus caballus 69_2 Horse 26 26
No Yes Myotis lucifugus 69_2.0 Little brown bat 29 29
No Yes Pteropus vampyrus 69_1 Large flying fox 24 24
No Yes Sorex araneus 69_1 European shrew 22 21
No Yes Erinaceus europaeus 69 Western European hedgehog 20 20
No Yes Procavia capensis 69_1 Cape rock hyrax 24 23
No Yes Loxodonta africana 69_3 African savanna elephant 29 29
No Yes Echinops telfairi 69 Small Madagascar hedgehog 19 19
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 18 17
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 18 16
No Yes Macropus eugenii 69_1.0 Tammar wallaby 24 23
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 24 24
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 26 26
No Yes Ornithorhynchus anatinus 69_5 Platypus 18 18
No Yes Petromyzon marinus 69_7.0 Sea lamprey 15 15
No Yes Meleagris gallopavo 69_2 Turkey 21 21
No Yes Gallus gallus 69_2 Chicken 21 21
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 19 19
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 23 23
No Yes Anolis carolinensis 69_2.0 Green anole 26 26
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 27 27
No Yes Latimeria chalumnae 69_1 Coelacanth 24 24
No Yes Gadus morhua 69_1 Atlantic cod 30 30
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 28 28
No Yes Takifugu rubripes 69_4 Torafugu 31 31
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 31 31
No Yes Oryzias latipes 69_1 Japanese medaka 29 29
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 30 30
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 31 31
No Yes Danio rerio 69_9 Zebrafish 33 33
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 13 13
No Yes Ciona intestinalis 69 Vase tunicate 15 15
No Yes Drosophila melanogaster 69_5 Fruit fly 17 17
No Yes Caenorhabditis elegans 69_215 Roundworm 16 16
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 15 15
No Yes Arabidopsis thaliana 10 Thale cress 38 38
No Yes 1_Upper_euphotic (meta-genome)   1 1
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   1 1
No Yes Core Eukaryotic Genes 458 (CEGMA)   42 42
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   4 4
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   3 3
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   2 2
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   1 1
No Yes NCBI 2017_08 genome   24895 24847
No Yes Protozoadb 2010_08 (Protozoadb)   646 644
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   2478 2475
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   32381 32260
No Yes Global Ocean Sampling Expedition (GOS)   52 52
No Yes PDB chains (SCOP 1.75) (PDB)   11 11
No Yes Protein Data Bank (all PDB sequenc)   151 151
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   217 217
No Yes TargetDB (Targets)   122 122

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