SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

  Home > Genomes > PDB chains (SCOP 1.75) > Carbamilase domains


Carbamilase family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

(show help)


PDB chains (SCOP 1.75) (PDB) has 6 significant domains in 6 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1erzA   5.35e-78   0.000000000161   2-300   1erz A:  
1fo6A   2.64e-77   0.000000000224   3-301   1erz A:  
1j31A   5.49e-111   0.0000000164   3-260   1j31 A:  
1uf5A   8.79e-76   0.000000000161   2-300   1erz A:  
2ggkA   2.12e-77   0.000000000224   3-302   1erz A:  
2gglA   8.24e-77   0.000000000227   3-301   1erz A:  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]

Add assignments from groups of genomes

View all assignments containing a Carbamilase domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   4405 4405
No Yes Rhodotorula graminis WP1 v1.0   1 1
No Yes Sporobolomyces roseus IAM 13481   1 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   1 1
No Yes Heterobasidion annosum   1 1
No Yes Gloeophyllum trabeumv1.0   2 2
No Yes Apiospora montagnei NRRL 25634 v1.0   1 1
No Yes Cryphonectria parasitica Chestnut blight fungus 1 1
No Yes Glomerella graminicola 22   1 1
No Yes Amorphotheca resinae v1.0 Creosote fungus 1 1
No Yes Setosphaeria turcica v1.0   2 2
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   1 1
No Yes Cochliobolus victoriae FI3 v1.0   1 1
No Yes Cochliobolus carbonum 26-R-13 v1.0   1 1
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 2 2
No Yes Stagonospora nodorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   2 2
No Yes Dothistroma septosporum   2 2
No Yes Septoria musiva v1.0   2 2
No Yes Mycosphaerella fijiensis CIRAD86   2 2
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   1 1
No Yes Ajellomyces dermatitidis SLH14081   1 1
No Yes Aspergillus zonatus v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus nidulans FGSC A4   2 2
No Yes Aspergillus sydowii v1.0   1 1
No Yes Aspergillus carbonarius ITEM 5010   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus wentii v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Hansenula polymorpha v2.0   2 2
No Yes Pichia membranifaciensv1.0   1 1
No Yes Wickerhamomyces anomalus   1 1
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Ilumatobacter coccineus   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Coprothermobacter proteolyticus DSM 5265   1 1
No Yes Candidatus Cloacamonas acidaminovorans   1 1
No Yes Chlorobaculum parvum NCIB 8327   1 1
No Yes Chlorobium tepidum TLS   1 1
No Yes Salinibacter ruber M8   1 1
No Yes Rhodothermus marinus DSM 4252   1 1
No Yes Planctomyces brasiliensis DSM 5305   1 1
No Yes Spirochaeta smaragdinae DSM 11293   1 1
No Yes Spirochaeta thermophila DSM 6192   1 1
No Yes Marinitoga piezophila KA3   1 1
No Yes Petrotoga mobilis SJ95   1 1
No Yes Candidatus Nitrospira defluvii   1 1
No Yes Syntrophus aciditrophicus SB   1 1
No Yes Burkholderia xenovorans LB400   1 1
No Yes Ralstonia eutropha JMP134   1 1
No Yes Cupriavidus necator N-1   1 1
No Yes Burkholderia sp. RPE64   1 1
No Yes Ramlibacter tataouinensis TTB310   1 1
No Yes Polaromonas sp. JS666   1 1
No Yes Polaromonas naphthalenivorans CJ2   1 1
No Yes Rhodoferax ferrireducens T118   2 2
No Yes Acidovorax avenae subsp. avenae ATCC 19860   1 1
No Yes Bordetella petrii DSM 12804   1 1
No Yes Bordetella avium 197N   1 1
No Yes Achromobacter xylosoxidans A8   3 3
No Yes Achromobacter xylosoxidans   2 2
No Yes Ketogulonicigenium vulgare Y25   2 2
No Yes Ketogulonigenium vulgarum WSH-001   2 2
No Yes Rhodobacter sphaeroides ATCC 17029   1 1
No Yes Gluconacetobacter xylinus NBRC 3288   1 1
No Yes Starkeya novella DSM 506   1 1
No Yes Azorhizobium caulinodans ORS 571   3 3
No Yes Methylobacterium radiotolerans JCM 2831   1 1
No Yes Agrobacterium vitis S4   1 1
No Yes Bradyrhizobium japonicum USDA 110   3 3
No Yes Bradyrhizobium sp. ORS 278   4 4
No Yes Marinobacter sp. BSs20148   1 1
No Yes Pantoea sp. At-9b   1 1
No Yes Pseudomonas sp. TKP   1 1
No Yes Pseudomonas sp. UW4   1 1
No Yes Pseudomonas putida F1   1 1
No Yes Candidatus Korarchaeum cryptofilum OPF8   1 1
No Yes Thermococcus sp. 4557   1 1
No Yes Thermococcus onnurineus NA1   1 1
No Yes Thermococcus kodakarensis KOD1   1 1
No Yes Thermococcus gammatolerans EJ3   1 1
No Yes Thermococcus sibiricus MM 739   1 1
No Yes Thermococcus barophilus MP   1 1
No Yes Pyrococcus sp. ST04   1 1
No Yes Pyrococcus yayanosii CH1   1 1
No Yes Pyrococcus horikoshii OT3   1 1
No Yes Pyrococcus abyssi GE5   1 1
No Yes Pyrococcus furiosus COM1   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Ajellomyces dermatitidis ER-3   1 1
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Salinibacter ruber DSM 13855   1 1
No Yes Rhodothermus marinus SG0.5JP17-172   1 1
No Yes Singulisphaera acidiphila DSM 18658   1 1
No Yes Spirochaeta thermophila DSM 6578   1 1
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Burkholderia phenoliruptrix BR3459a   1 1
No Yes Pandoraea pnomenusa 3kgm   2 2
No Yes Burkholderia sp. CCGE1003   1 1
No Yes Burkholderia sp. CCGE1001   1 1
No Yes Achromobacter xylosoxidans NBRC 15126 = ATCC 27061   2 2
No Yes Rhodobacter sphaeroides KD131   1 1
No Yes Rhodobacter sphaeroides ATCC 17025   1 1
No Yes Rhodobacter sphaeroides 2.4.1   1 1
No Yes Methylobacterium extorquens DM4   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   1 1
No Yes Bradyrhizobium sp. S23321   3 3
No Yes Bradyrhizobium sp. BTAi1   4 4
No Yes Bradyrhizobium oligotrophicum S58   4 4
No Yes Bradyrhizobium japonicum USDA 6   2 2
No Yes Pseudomonas monteilii SB3101   1 1
No Yes Pseudomonas monteilii SB3078   1 1
No Yes Pseudomonas putida HB3267   1 1
No Yes Pseudomonas putida S16   1 1
No Yes Pseudomonas putida BIRD-1   1 1
No Yes Pseudomonas putida ND6   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Thermococcus sp. AM4   1 1
No Yes Thermococcus sp. CL1   1 1
No Yes Thermococcus litoralis DSM 5473   1 1
No Yes Pyrococcus sp. NA2   1 1
No Yes Pyrococcus furiosus DSM 3638   1 1
No Yes 2_050719S (meta-genome)   1 1
No Yes 3_050719R (meta-genome)   1 1
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   1 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   2 2
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   5 5
No Yes Dump top (Dump top) (meta-genome)   7 7
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   8 8
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   1889 1889
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   2 2
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   2 2
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   4 4
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   1 1
No Yes Sludge/US, Phrap Assembly (meta-genome)   2 2
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   7 7
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   5 5
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   3 3
No Yes STRING v9.0.5 (STRING)   56 56
No Yes Uniprot 2018_03 genome   1801 1801
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   3 3
No Yes Global Ocean Sampling Expedition (GOS)   77 77
No Yes NCBI plasmid sequences (Plasmids)   8 8
No Yes PDB chains (SCOP 1.75) (PDB)   6 6
No Yes Protein Data Bank (all PDB sequenc)   34 34
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   133 133
No Yes TargetDB (Targets)   1 1

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@mrc-lmb.cam.ac.uk or use the feedback form.

© Copyright 2017 The SUPERFAMILY authors and Julian Gough.