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  Home > Genomes > Poecilia formosa 76 > Intermediate filament protein, coiled coil region domains


Intermediate filament protein, coiled coil region superfamily domain assignments
in
Poecilia formosa 76

Assignment details

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Poecilia formosa 76 has 105 significant domains in 48 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPFOP00000000200   1.24e-23   304-382   Intermediate filament protein, coiled coil region  
  0.0000000162   74-109   Intermediate filament protein, coiled coil region  
ENSPFOP00000000770   1.13e-24   349-427   Intermediate filament protein, coiled coil region  
  0.00000000000523   120-154   Intermediate filament protein, coiled coil region  
ENSPFOP00000001083   6.63e-24   307-384   Intermediate filament protein, coiled coil region  
  9.24e-24   809-886   Intermediate filament protein, coiled coil region  
  0.00000000000429   77-111   Intermediate filament protein, coiled coil region  
  0.00000000000837   579-613   Intermediate filament protein, coiled coil region  
  0.00000356   113-182   Intermediate filament protein, coiled coil region  
  0.0000303   616-684   Intermediate filament protein, coiled coil region  
ENSPFOP00000001212   5.93e-24   339-416   Intermediate filament protein, coiled coil region  
  0.0000000000022   109-143   Intermediate filament protein, coiled coil region  
  0.000000335   145-217   Intermediate filament protein, coiled coil region  
ENSPFOP00000002281   3.66e-22   322-400   Intermediate filament protein, coiled coil region  
  0.00000000575   92-126   Intermediate filament protein, coiled coil region  
ENSPFOP00000002666   1.24e-22   894-971   Intermediate filament protein, coiled coil region  
  4.19e-21   371-448   Intermediate filament protein, coiled coil region  
  0.00000000000523   648-682   Intermediate filament protein, coiled coil region  
  0.0000000000068   119-153   Intermediate filament protein, coiled coil region  
  0.000000507   684-756   Intermediate filament protein, coiled coil region  
  0.00319   156-222   Intermediate filament protein, coiled coil region  
ENSPFOP00000002824   4.01e-17   536-613   Intermediate filament protein, coiled coil region  
  0.0000628   305-340   Intermediate filament protein, coiled coil region  
  0.00889   344-410   Intermediate filament protein, coiled coil region  
ENSPFOP00000003047   0.0000000000907   304-379   Intermediate filament protein, coiled coil region  
  0.000000628   74-109   Intermediate filament protein, coiled coil region  
ENSPFOP00000003618   0.000000000000296   309-375   Intermediate filament protein, coiled coil region  
  0.0000000319   67-100   Intermediate filament protein, coiled coil region  
ENSPFOP00000004091   6.8e-25   317-395   Intermediate filament protein, coiled coil region  
  1.64e-17   783-861   Intermediate filament protein, coiled coil region  
  0.000000000811   86-122   Intermediate filament protein, coiled coil region  
  0.0000000162   554-589   Intermediate filament protein, coiled coil region  
  0.0837   137-200   Intermediate filament protein, coiled coil region  
ENSPFOP00000004174   0.00000000136   83-118   Intermediate filament protein, coiled coil region  
ENSPFOP00000004205   3.84e-24   325-402   Intermediate filament protein, coiled coil region  
  0.0000000000209   95-130   Intermediate filament protein, coiled coil region  
ENSPFOP00000004265   1.5e-22   330-407   Intermediate filament protein, coiled coil region  
  0.000000000732   101-135   Intermediate filament protein, coiled coil region  
ENSPFOP00000005319   3.14e-25   324-402   Intermediate filament protein, coiled coil region  
  0.0000000000000131   96-133   Intermediate filament protein, coiled coil region  
ENSPFOP00000005709   1.13e-24   349-427   Intermediate filament protein, coiled coil region  
  0.00000000000523   120-154   Intermediate filament protein, coiled coil region  
ENSPFOP00000005721   1.01e-20   300-378   Intermediate filament protein, coiled coil region  
  0.00000000209   70-105   Intermediate filament protein, coiled coil region  
ENSPFOP00000005736   1.43e-22   297-375   Intermediate filament protein, coiled coil region  
  2.27e-21   688-766   Intermediate filament protein, coiled coil region  
  0.0000000183   457-492   Intermediate filament protein, coiled coil region  
  0.0000000303   67-102   Intermediate filament protein, coiled coil region  
ENSPFOP00000005924   4.01e-25   318-395   Intermediate filament protein, coiled coil region  
  0.0000000000000837   89-126   Intermediate filament protein, coiled coil region  
ENSPFOP00000007226   1.01e-24   322-400   Intermediate filament protein, coiled coil region  
  0.0000000000105   92-128   Intermediate filament protein, coiled coil region  
ENSPFOP00000007256   1.92e-20   317-396   Intermediate filament protein, coiled coil region  
  0.00000000012   87-120   Intermediate filament protein, coiled coil region  
ENSPFOP00000007376   4.88e-18   300-376   Intermediate filament protein, coiled coil region  
  0.000000034   24-56   Intermediate filament protein, coiled coil region  
ENSPFOP00000007967   3.49e-24   687-765   Intermediate filament protein, coiled coil region  
  1.41e-23   1107-1185   Intermediate filament protein, coiled coil region  
  8.55e-23   304-382   Intermediate filament protein, coiled coil region  
  0.00000000575   74-109   Intermediate filament protein, coiled coil region  
  0.0000000068   468-502   Intermediate filament protein, coiled coil region  
  0.000000377   876-911   Intermediate filament protein, coiled coil region  
  0.0994   149-187   Intermediate filament protein, coiled coil region  
ENSPFOP00000008382   2.96e-24   349-427   Intermediate filament protein, coiled coil region  
  0.000000000000837   117-153   Intermediate filament protein, coiled coil region  
ENSPFOP00000009013   0.00000000000103   508-576   Intermediate filament protein, coiled coil region  
  0.000837   96-126   Intermediate filament protein, coiled coil region  
ENSPFOP00000009188   3.31e-22   312-389   Intermediate filament protein, coiled coil region  
  0.0000000000455   82-118   Intermediate filament protein, coiled coil region  
ENSPFOP00000009689   1.55e-24   334-412   Intermediate filament protein, coiled coil region  
  0.000000000000303   106-142   Intermediate filament protein, coiled coil region  
ENSPFOP00000009847   1.62e-24   334-412   Intermediate filament protein, coiled coil region  
  0.000000000000314   106-142   Intermediate filament protein, coiled coil region  
ENSPFOP00000009904   0.000000000000262   376-427   Intermediate filament protein, coiled coil region  
  0.0000000000645   118-154   Intermediate filament protein, coiled coil region  
ENSPFOP00000011260   0.0000000000000127   309-386   Intermediate filament protein, coiled coil region  
  0.0162   86-112   Intermediate filament protein, coiled coil region  
ENSPFOP00000011536   6.63e-18   310-387   Intermediate filament protein, coiled coil region  
  0.000000000246   79-113   Intermediate filament protein, coiled coil region  
ENSPFOP00000011610   2.27e-17   296-373   Intermediate filament protein, coiled coil region  
  0.000000068   21-53   Intermediate filament protein, coiled coil region  
ENSPFOP00000012873   6.8e-19   317-386   Intermediate filament protein, coiled coil region  
  0.0000000434   30-63   Intermediate filament protein, coiled coil region  
ENSPFOP00000013259   0.00000000000209   353-420   Intermediate filament protein, coiled coil region  
  0.000732   39-70   Intermediate filament protein, coiled coil region  
ENSPFOP00000013397   1.05e-24   327-405   Intermediate filament protein, coiled coil region  
  0.000000000000942   98-132   Intermediate filament protein, coiled coil region  
ENSPFOP00000013633   0.00000000000171   493-560   Intermediate filament protein, coiled coil region  
  0.000785   78-108   Intermediate filament protein, coiled coil region  
ENSPFOP00000013643   3.66e-24   303-381   Intermediate filament protein, coiled coil region  
  0.00000000199   73-108   Intermediate filament protein, coiled coil region  
ENSPFOP00000013686   1.67e-16   283-354   Intermediate filament protein, coiled coil region  
  0.0033   9-40   Intermediate filament protein, coiled coil region  
ENSPFOP00000014679   1.22e-22   324-401   Intermediate filament protein, coiled coil region  
  0.000000000033   94-127   Intermediate filament protein, coiled coil region  
ENSPFOP00000014796   1.64e-20   276-354   Intermediate filament protein, coiled coil region  
  0.00000000889   46-82   Intermediate filament protein, coiled coil region  
ENSPFOP00000015074   0.000000942   41-73   Intermediate filament protein, coiled coil region  
  0.00000123   249-320   Intermediate filament protein, coiled coil region  
ENSPFOP00000016649   8.72e-22   290-368   Intermediate filament protein, coiled coil region  
  0.00000000235   59-93   Intermediate filament protein, coiled coil region  
ENSPFOP00000018054   1.19e-22   346-423   Intermediate filament protein, coiled coil region  
  0.0000000000319   116-149   Intermediate filament protein, coiled coil region  
ENSPFOP00000018225   5.41e-25   334-412   Intermediate filament protein, coiled coil region  
  0.00000000000146   107-143   Intermediate filament protein, coiled coil region  
ENSPFOP00000018417   0.000000000244   257-325   Intermediate filament protein, coiled coil region  
  0.00000628   17-51   Intermediate filament protein, coiled coil region  
ENSPFOP00000019273   5.41e-20   317-397   Intermediate filament protein, coiled coil region  
  0.00000000000628   86-120   Intermediate filament protein, coiled coil region  
  0.0889   123-195   Intermediate filament protein, coiled coil region  
ENSPFOP00000019309   0.0000000000384   248-315   Intermediate filament protein, coiled coil region  
  0.000000408   10-45   Intermediate filament protein, coiled coil region  
ENSPFOP00000019498   1.22e-18   341-417   Intermediate filament protein, coiled coil region  
  0.00000000126   110-145   Intermediate filament protein, coiled coil region  
ENSPFOP00000019833   0.0000000033   361-397   Intermediate filament protein, coiled coil region  
 
Weak hits:
ENSPFOP00000020362   0.000331   2-51   Intermediate filament protein, coiled coil region  

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View all assignments containing a Intermediate filament protein, coiled coil region domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   91545 91545
No Yes Homo sapiens 76_38 Human 312 169
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 180 85
No Yes Gorilla gorilla 76_3.1 Western gorilla 291 147
No Yes Pongo abelii 76_2 Sumatran orangutan 158 78
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 152 75
No Yes Papio anubis 76 Olive baboon 210 99
No Yes Macaca mulatta 76_1 Rhesus monkey 284 161
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 492 246
No Yes Otolemur garnettii 76_3 Small-eared galago 182 92
No Yes Microcebus murinus 76_1 Gray mouse lemur 130 67
No Yes Rattus norvegicus 76_5.0 Norway rat 163 82
No Yes Mus musculus 76_38 House mouse 188 94
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 117 63
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 129 61
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 139 71
No Yes Cavia porcellus 76_3 Domestic guinea pig 71 37
No Yes Oryctolagus cuniculus 76_2 Rabbit 144 69
No Yes Ochotona princeps 76 American pika 119 61
No Yes Tupaia belangeri 76 Northern tree shrew 108 57
No Yes Sus scrofa 76_10.2 Pig 138 69
No Yes Bos taurus 76_3.1 Cattle 177 82
No Yes Ovis aries 76_3.1 Sheep 163 77
No Yes Vicugna pacos 76_1 Alpaca 58 37
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 84 48
No Yes Mustela putorius furo 76_1.0 Domestic ferret 139 69
No Yes Ailuropoda melanoleuca 76_1 Giant panda 172 87
No Yes Canis familiaris 76_3.1 Dog 206 107
No Yes Felis catus 76_6.2 Domestic cat 161 79
No Yes Equus caballus 76_2 Horse 190 92
No Yes Myotis lucifugus 76_2.0 Little brown bat 168 86
No Yes Pteropus vampyrus 76_1 Large flying fox 132 69
No Yes Sorex araneus 76_1 European shrew 75 46
No Yes Erinaceus europaeus 76 Western European hedgehog 115 60
No Yes Procavia capensis 76_1 Cape rock hyrax 109 59
No Yes Loxodonta africana 76_3 African savanna elephant 188 90
No Yes Echinops telfairi 76 Small Madagascar hedgehog 103 57
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 177 77
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 60 39
No Yes Macropus eugenii 76_1.0 Tammar wallaby 118 66
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 160 79
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 121 63
No Yes Ornithorhynchus anatinus 76_5 Platypus 151 82
No Yes Saccoglossus kowalevskii v3.0   2 1
No Yes Petromyzon marinus 76_7.0 Sea lamprey 56 36
No Yes Meleagris gallopavo 76_2 Turkey 97 50
No Yes Gallus gallus 76_4 Chicken 73 39
No Yes Anas platyrhynchos 76_1.0 Mallard 56 34
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 53 37
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 88 48
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 69 43
No Yes Anolis carolinensis 76_2.0 Green anole 102 54
No Yes Xenopus laevis African clawed frog 367 182
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 121 64
No Yes Latimeria chalumnae 76_1 Coelacanth 82 41
No Yes Lepisosteus oculatus 76 Spotted gar 101 50
No Yes Gadus morhua 76_1 Atlantic cod 113 64
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 103 58
No Yes Takifugu rubripes 76_4 Torafugu 397 197
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 153 79
No Yes Oryzias latipes 76_1 Japanese medaka 128 67
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 88 49
No Yes Poecilia formosa 76 Amazon molly 105 48
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 116 59
No Yes Astyanax mexicanus 76 Mexican tetra 115 58
No Yes Danio rerio 76_9 Zebrafish 200 107
No Yes Oikopleura dioica   8 4
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 19 11
No Yes Ciona intestinalis 76 Vase tunicate 12 7
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 5 4
No Yes Adineta vaga   63 35
No Yes Octopus bimaculoides 280   17 12
No Yes Crassostrea gigas 22 Pacific oyster 7 4
No Yes Lottia gigantea Owl limpet 11 6
No Yes Helobdella robusta   21 12
No Yes Capitella sp. I   3 2
No Yes Danaus plexippus OGS1.0 Monarch butterfly 1 1
No Yes Heliconius melpomene Postman butterfly 2 1
No Yes Bombyx mori Domestic silkworm 2 2
No Yes Nasonia vitripennis Jewel wasp 2 1
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 4 4
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 2 1
No Yes Linepithema humile v1.1 Argentine ant 2 1
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 1 1
No Yes Solenopsis invicta v.2.2.3 Red fire ant 2 2
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 2 1
No Yes Atta cephalotes v1.1   2 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 3 2
No Yes Lucilia cuprina Australian sheep blowfly 4 2
No Yes Drosophila grimshawi 1.3   4 2
No Yes Drosophila willistoni 1.3   4 2
No Yes Drosophila pseudoobscura 2.13   4 2
No Yes Drosophila persimilis 1.3   4 3
No Yes Drosophila suzukii   4 2
No Yes Drosophila yakuba 1.3   4 2
No Yes Drosophila simulans 1.3   2 1
No Yes Drosophila sechellia 1.3   4 2
No Yes Drosophila melanogaster 76_5 Fruit fly 10 5
No Yes Drosophila erecta 1.3   4 2
No Yes Drosophila ananassae 1.3   4 2
No Yes Drosophila virilis 1.2   4 2
No Yes Drosophila mojavensis 1.3   4 2
No Yes Megaselia scalaris 22   2 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 4 2
No Yes Culex pipiens quinquefasciatus Southern house mosquito 4 2
No Yes Anopheles darlingi 22 American malaria mosquito 4 2
No Yes Anopheles gambiae 49_3j African malaria mosquito 4 2
No Yes Tribolium castaneum 3.0 Red flour beetle 2 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 2 1
No Yes Acyrthosiphon pisum Pea aphid 5 3
No Yes Rhodnius prolixus 22   2 1
No Yes Daphnia pulex Common water flea 3 2
No Yes Strigamia maritima 22   2 1
No Yes Sarcoptes scabiei   2 1
No Yes Tetranychus urticae Two-spotted spider mite 1 1
No Yes Ixodes scapularis (Preliminary) Black-legged tick 2 1
No Yes Pristionchus pacificus   11 7
No Yes Meloidogyne incognita Southern root-knot nematode 10 5
No Yes Meloidogyne hapla   3 2
No Yes Onchocerca volvulus 22   10 5
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 14 10
No Yes Caenorhabditis japonica   17 10
No Yes Caenorhabditis brenneri   24 13
No Yes Caenorhabditis remanei   24 13
No Yes Caenorhabditis elegans 76_235 Roundworm 48 25
No Yes Caenorhabditis briggsae 2   25 14
No Yes Trichinella spiralis 22   8 5
No Yes Hymenolepis microstoma   7 4
No Yes Echinococcus multilocularis   6 4
No Yes Echinococcus granulosus   6 4
No Yes Taenia solium Pork tapeworm 6 4
No Yes Schistosoma mansoni   6 4
No Yes Mnemiopsis leidyi Sea walnut 1 1
No Yes Acropora digitifera v1.0   4 2
No Yes Nematostella vectensis 1.0 Starlet sea anemone 2 1
No Yes Hydra vulgaris   2 2
No Yes Amphimedon queenslandica   4 2
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   1 1
No Yes Capsaspora owczarzaki ATCC 30864   1 1
No Yes Sebacina vermifera MAFF 305830 v1.0   1 1
No Yes Penicillium marneffei ATCC 18224   1 1
No Yes Amborella trichopoda 22   2 2
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Albugo laibachii 22   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Hyaloperonospora arabidopsidis 22   1 1
No Yes Trichomonas vaginalis   2 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 238 119
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 4 2
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 4 2
No Yes Ascaris suum Victoria/Ghent Pig roundworm 14 10
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 34 18
No Yes Homo sapiens 75_37 (old version GRC) Human 313 169
No Yes Homo sapiens (NCBI version) Human 185 86
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 157 72
No Yes Loa loa v3.3 (Request) Eye worm 11 6
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 8 7
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 7 5
No Yes Homo sapiens 69_37 Human 184 85
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 152 72
No Yes Gorilla gorilla 69_3.1 Western gorilla 208 106
No Yes Pongo abelii 69_2 Sumatran orangutan 153 75
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 136 66
No Yes Macaca mulatta 69_1 Rhesus monkey 220 122
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 310 154
No Yes Otolemur garnettii 69_3 Small-eared galago 179 91
No Yes Microcebus murinus 69_1 Gray mouse lemur 130 67
No Yes Rattus norvegicus 69_3.4 Norway rat 145 73
No Yes Mus musculus 69_38 House mouse 159 74
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 117 63
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 126 60
No Yes Cavia porcellus 69_3 Domestic guinea pig 69 36
No Yes Oryctolagus cuniculus 69_2 Rabbit 122 60
No Yes Ochotona princeps 69 American pika 119 61
No Yes Tupaia belangeri 69 Northern tree shrew 108 57
No Yes Sus scrofa 69_10.2 Pig 131 64
No Yes Bos taurus 69_3.1 Cattle 166 77
No Yes Vicugna pacos 69_1 Alpaca 58 37
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 84 48
No Yes Mustela putorius furo 69_1.0 Domestic ferret 139 69
No Yes Ailuropoda melanoleuca 69_1 Giant panda 153 77
No Yes Canis familiaris 69_3.1 Dog 149 76
No Yes Felis catus 69 Domestic cat 116 63
No Yes Equus caballus 69_2 Horse 165 81
No Yes Myotis lucifugus 69_2.0 Little brown bat 167 85
No Yes Pteropus vampyrus 69_1 Large flying fox 132 69
No Yes Sorex araneus 69_1 European shrew 75 46
No Yes Erinaceus europaeus 69 Western European hedgehog 115 60
No Yes Procavia capensis 69_1 Cape rock hyrax 109 59
No Yes Loxodonta africana 69_3 African savanna elephant 123 60
No Yes Echinops telfairi 69 Small Madagascar hedgehog 103 57
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 85 53
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 60 39
No Yes Macropus eugenii 69_1.0 Tammar wallaby 118 66
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 141 69
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 116 60
No Yes Ornithorhynchus anatinus 69_5 Platypus 125 70
No Yes Petromyzon marinus 69_7.0 Sea lamprey 53 33
No Yes Meleagris gallopavo 69_2 Turkey 56 32
No Yes Gallus gallus 69_2 Chicken 62 35
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 49 34
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 60 39
No Yes Anolis carolinensis 69_2.0 Green anole 82 44
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 96 50
No Yes Latimeria chalumnae 69_1 Coelacanth 77 39
No Yes Gadus morhua 69_1 Atlantic cod 89 52
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 90 51
No Yes Takifugu rubripes 69_4 Torafugu 90 46
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 85 44
No Yes Oryzias latipes 69_1 Japanese medaka 88 48
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 88 49
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 98 50
No Yes Danio rerio 69_9 Zebrafish 128 65
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 12 6
No Yes Ciona intestinalis 69 Vase tunicate 12 7
No Yes Drosophila melanogaster 69_5 Fruit fly 4 2
No Yes Caenorhabditis elegans 69_215 Roundworm 21 11
No Yes 1_050719N (meta-genome)   2 2
No Yes 2_050719S (meta-genome)   1 1
No Yes Bath Hot Springs, planktonic community (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   1 1
No Yes Mouse Gut Community lean2 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   37582 19325
No Yes Protozoadb 2010_08 (Protozoadb)   4 4
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   3252 1692
No Yes Uniprot 2018_03 genome   24274 12807
No Yes Global Ocean Sampling Expedition (GOS)   4 4
No Yes PDB chains (SCOP 1.75) (PDB)   4 4
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   31 31
No Yes TargetDB (Targets)   100 54

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.