SUPERFAMILY 1.75 HMM library and genome assignments server

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Phage tail proteins superfamily domain assignments
in
Clostridium perfringens ATCC 13124


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Select to display   Genome       Domains   Proteins
No Yes ALL   343977 343977
No Yes Capitella sp. I   1 1
No Yes Acyrthosiphon pisum Pea aphid 1 1
No Yes Caenorhabditis remanei   2 2
No Yes Nematostella vectensis 1.0 Starlet sea anemone 4 2
No Yes Amphimedon queenslandica   2 2
No Yes Medicago truncatula Barrel medic 9 4
No Yes Solanum lycopersicum v.2.3 Tomato 2 1
No Yes Phytophthora capsici   1 1
No Yes Leptolyngbya sp. PCC 7376   1 1
No Yes Pseudanabaena sp. PCC 7367   1 1
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Synechococcus elongatus PCC 7942   1 1
No Yes Microcoleus sp. PCC 7113   1 1
No Yes Gloeobacter violaceus PCC 7421   1 1
No Yes Rivularia sp. PCC 7116   2 2
No Yes Calothrix sp. PCC 7507   3 3
No Yes Nostoc sp. PCC 7107   1 1
No Yes Nostoc punctiforme PCC 73102   2 2
No Yes Nostoc sp. PCC 7120   1 1
No Yes Nostoc sp. PCC 7524   2 2
No Yes Ilumatobacter coccineus   1 1
No Yes Nakamurella multipartita DSM 44233   2 2
No Yes Catenulispora acidiphila DSM 44928   1 1
No Yes Frankia sp. EAN1pec   1 1
No Yes Streptomyces coelicolor A3(2)   1 1
No Yes Streptomyces sp. PAMC26508   1 1
No Yes Streptomyces flavogriseus ATCC 33331   1 1
No Yes Streptomyces sp. SirexAA-E   1 1
No Yes Streptomyces griseus subsp. griseus NBRC 13350   1 1
No Yes Streptomyces bingchenggensis BCW-1   2 2
No Yes Streptomyces violaceusniger Tu 4113   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Streptomyces scabiei 87.22   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   1 1
No Yes Actinosynnema mirum DSM 43827   2 2
No Yes Amycolatopsis mediterranei U32   1 1
No Yes Microlunatus phosphovorus NM-1   2 2
No Yes Verrucosispora maris AB-18-032   1 1
No Yes Micromonospora sp. L5   1 1
No Yes Micromonospora aurantiaca ATCC 27029   1 1
No Yes Actinoplanes sp. SE50/110   1 1
No Yes Mycobacterium sp. JLS   1 1
No Yes Sanguibacter keddieii DSM 10542   1 1
No Yes Jonesia denitrificans DSM 20603   1 1
No Yes Xylanimonas cellulosilytica DSM 15894   1 1
No Yes Cellulomonas flavigena DSM 20109   1 1
No Yes Cellulomonas fimi ATCC 484   1 1
No Yes Arthrobacter aurescens TC1   1 1
No Yes Caldilinea aerophila DSM 14535 = NBRC 104270   1 1
No Yes Dehalogenimonas lykanthroporepellens BL-DC-9   1 1
No Yes Herpetosiphon aurantiacus DSM 785   1 1
No Yes Roseiflexus sp. RS-1   1 1
No Yes Roseiflexus castenholzii DSM 13941   1 1
No Yes Deinococcus gobiensis I-0   1 1
No Yes Deinococcus deserti VCD115   1 1
No Yes Deinococcus maricopensis DSM 21211   1 1
No Yes Megasphaera elsdenii DSM 20460   1 1
No Yes Acidaminococcus intestini RyC-MR95   4 4
No Yes Selenomonas ruminantium subsp. lactilytica TAM6421   6 6
No Yes Clostridium cellulolyticum H10   1 1
No Yes Clostridium thermocellum ATCC 27405   2 2
No Yes Faecalibacterium prausnitzii   1 1
No Yes Ruminococcus sp.   1 1
No Yes Ruminococcus albus 7   1 1
No Yes Oscillibacter valericigenes Sjm18-20   6 6
No Yes butyrate-producing bacterium SS3/4   1 1
No Yes butyrate-producing bacterium SM4/1   1 1
No Yes Desulfosporosinus acidiphilus SJ4   2 2
No Yes Desulfosporosinus orientis DSM 765   2 2
No Yes Syntrophobotulus glycolicus DSM 8271   1 1
No Yes Desulfitobacterium hafniense Y51   3 3
No Yes Desulfitobacterium dehalogenans ATCC 51507   6 6
No Yes Desulfotomaculum reducens MI-1   1 1
No Yes Desulfotomaculum acetoxidans DSM 771   1 1
No Yes Desulfotomaculum kuznetsovii DSM 6115   1 1
No Yes Desulfotomaculum ruminis DSM 2154   5 5
No Yes Eubacterium eligens ATCC 27750   2 2
No Yes Clostridium difficile 630   5 5
No Yes Clostridium sticklandii DSM 519   1 1
No Yes Clostridium saccharolyticum WM1   1 1
No Yes Clostridium phytofermentans ISDg   3 3
No Yes Clostridium lentocellum DSM 5427   2 2
No Yes [Ruminococcus] torques   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Roseburia intestinalis   2 2
No Yes Alkaliphilus metalliredigens QYMF   2 2
No Yes Candidatus Arthromitus sp. SFB-mouse-Japan   2 2
No Yes Clostridium sp. BNL1100   3 3
No Yes Clostridium ljungdahlii DSM 13528   1 1
No Yes Clostridium kluyveri DSM 555   3 3
No Yes Clostridium beijerinckii NCIMB 8052   11 11
No Yes Clostridium tetani E88   3 3
No Yes Clostridium botulinum A str. ATCC 3502   4 4
No Yes Mahella australiensis 50-1 BON   2 2
No Yes Caldicellulosiruptor hydrothermalis 108   1 1
No Yes Lactobacillus gasseri ATCC 33323   2 2
No Yes Streptococcus mitis B6   2 2
No Yes Exiguobacterium sp. MH3   2 2
No Yes Exiguobacterium sp. AT1b   2 2
No Yes Brevibacillus brevis NBRC 100599   11 11
No Yes Paenibacillus sp. JDR-2   2 2
No Yes Paenibacillus terrae HPL-003   11 11
No Yes Paenibacillus polymyxa M1   12 12
No Yes Listeria innocua Clip11262   2 2
No Yes Solibacillus silvestris StLB046   2 2
No Yes Lysinibacillus sphaericus C3-41   6 6
No Yes Geobacillus thermoleovorans CCB_US3_UF5   2 2
No Yes Bacillus sp. JS   2 2
No Yes Bacillus atrophaeus 1942   2 2
No Yes Bacillus subtilis subsp. subtilis str. 168   4 4
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   2 2
No Yes Bacillus pumilus SAFR-032   2 2
No Yes Gemmatimonas aurantiaca T-27   3 2
No Yes Chlorobaculum parvum NCIB 8327   1 1
No Yes Chloroherpeton thalassium ATCC 35110   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   1 1
No Yes Saprospira grandis str. Lewin   1 1
No Yes Niastella koreensis GR20-10   3 3
No Yes Chitinophaga pinensis DSM 2588   8 6
No Yes Candidatus Amoebophilus asiaticus 5a2   1 1
No Yes Candidatus Cardinium hertigii   1 1
No Yes Cyclobacterium marinum DSM 745   1 1
No Yes Fibrella aestuarina   1 1
No Yes Dyadobacter fermentans DSM 18053   2 2
No Yes Cytophaga hutchinsonii ATCC 33406   1 1
No Yes Spirosoma linguale DSM 74   2 1
No Yes Runella slithyformis DSM 19594   1 1
No Yes Parabacteroides distasonis ATCC 8503   1 1
No Yes Prevotella intermedia 17   2 2
No Yes Alistipes finegoldii DSM 17242   1 1
No Yes Bacteroides salanitronis DSM 18170   1 1
No Yes Bacteroides fragilis YCH46   3 2
No Yes Solitalea canadensis DSM 3403   1 1
No Yes Sphingobacterium sp. 21   1 1
No Yes Owenweeksia hongkongensis DSM 17368   1 1
No Yes Lacinutrix sp. 5H-3-7-4   3 2
No Yes Zobellia galactanivorans   2 2
No Yes Cellulophaga algicola DSM 14237   3 3
No Yes Capnocytophaga ochracea DSM 7271   1 1
No Yes Weeksella virosa DSM 16922   1 1
No Yes Flavobacterium branchiophilum FL-15   5 3
No Yes Flavobacterium columnare ATCC 49512   4 4
No Yes Flavobacterium johnsoniae UW101   7 6
No Yes Planctomyces brasiliensis DSM 5305   2 1
No Yes Rhodopirellula baltica SH 1   2 1
No Yes Pirellula staleyi DSM 6068   2 1
No Yes Fretibacterium fastidiosum   1 1
No Yes Aminobacterium colombiense DSM 12261   1 1
No Yes Brachyspira intermedia PWS/A   2 1
No Yes Sphaerochaeta pleomorpha str. Grapes   1 1
No Yes Treponema succinifaciens DSM 2489   7 7
No Yes Persephonella marina EX-H1   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   2 1
No Yes Granulicella tundricola MP5ACTX9   3 2
No Yes Granulicella mallensis MP5ACTX8   7 5
No Yes Terriglobus saanensis SP1PR4   2 1
No Yes Candidatus Nitrospira defluvii   2 1
No Yes Leptospirillum ferrooxidans C2-3   2 1
No Yes Streptobacillus moniliformis DSM 12112   1 1
No Yes Sebaldella termitidis ATCC 33386   10 10
No Yes Leptotrichia buccalis C-1013-b   5 5
No Yes Ilyobacter polytropus DSM 2926   2 2
No Yes Nitratifractor salsuginis DSM 16511   1 1
No Yes Arcobacter sp. L   3 3
No Yes Arcobacter nitrofigilis DSM 7299   2 2
No Yes Arcobacter butzleri RM4018   1 1
No Yes Campylobacter concisus 13826   1 1
No Yes Helicobacter bizzozeronii CIII-1   1 1
No Yes Helicobacter hepaticus ATCC 51449   1 1
No Yes Helicobacter cinaedi PAGU611   1 1
No Yes Desulfarculus baarsii DSM 2075   2 2
No Yes Desulfobacca acetoxidans DSM 11109   1 1
No Yes Syntrophus aciditrophicus SB   2 1
No Yes Syntrophobacter fumaroxidans MPOB   1 1
No Yes Desulfobulbus propionicus DSM 2032   1 1
No Yes Desulfobacterium autotrophicum HRM2   1 1
No Yes Desulfovibrio aespoeensis Aspo-2   3 2
No Yes Lawsonia intracellularis PHE/MN1-00   2 1
No Yes Desulfovibrio alaskensis G20   3 3
No Yes Desulfovibrio salexigens DSM 2638   3 2
No Yes Desulfovibrio africanus str. Walvis Bay   7 4
No Yes Geobacter daltonii FRC-32   1 1
No Yes Geobacter sp. M21   4 3
No Yes Geobacter bemidjiensis Bem   3 2
No Yes Geobacter sulfurreducens KN400   3 2
No Yes Geobacter metallireducens GS-15   3 2
No Yes Pelobacter propionicus DSM 2379   2 2
No Yes Pelobacter carbinolicus DSM 2380   7 4
No Yes Haliangium ochraceum DSM 14365   4 4
No Yes Sorangium cellulosum 'So ce 56'   59 30
No Yes Stigmatella aurantiaca DW4/3-1   3 3
No Yes Corallococcus coralloides DSM 2259   2 2
No Yes Myxococcus xanthus DK 1622   6 4
No Yes Myxococcus fulvus HW-1   5 3
No Yes Dechloromonas aromatica RCB   8 5
No Yes Thauera sp. MZ1T   1 1
No Yes Azoarcus sp. KH32C   7 4
No Yes Azoarcus sp. BH72   6 3
No Yes Dechlorosoma suillum PS   2 1
No Yes Pseudogulbenkiania sp. NH8B   7 4
No Yes Laribacter hongkongensis HLHK9   7 6
No Yes Chromobacterium violaceum ATCC 12472   16 9
No Yes Neisseria meningitidis alpha14   1 1
No Yes Neisseria lactamica 020-06   1 1
No Yes Candidatus Accumulibacter phosphatis clade IIA str. UW-1   1 1
No Yes Rubrivivax gelatinosus IL144   12 6
No Yes Leptothrix cholodnii SP-6   3 2
No Yes Burkholderia rhizoxinica HKI 454   4 4
No Yes Burkholderia phytofirmans PsJN   10 5
No Yes Burkholderia phymatum STM815   18 9
No Yes Burkholderia xenovorans LB400   10 5
No Yes Ralstonia eutropha JMP134   6 3
No Yes Cupriavidus taiwanensis LMG 19424   13 7
No Yes Cupriavidus metallidurans CH34   4 2
No Yes Cupriavidus necator N-1   2 1
No Yes Ralstonia eutropha H16   14 7
No Yes Ralstonia pickettii 12D   8 4
No Yes Ralstonia solanacearum CFBP2957   20 11
No Yes Burkholderia sp. RPE64   5 3
No Yes Burkholderia sp. CCGE1002   9 5
No Yes Burkholderia thailandensis E264   28 15
No Yes Burkholderia pseudomallei 1106a   26 13
No Yes Burkholderia mallei SAVP1   14 7
No Yes Burkholderia ambifaria AMMD   17 9
No Yes Burkholderia cenocepacia HI2424   16 8
No Yes Burkholderia multivorans ATCC 17616   11 6
No Yes Burkholderia vietnamiensis G4   18 9
No Yes Burkholderia gladioli BSR3   31 18
No Yes Burkholderia glumae BGR1   36 20
No Yes Delftia sp. Cs1-4   7 4
No Yes Delftia acidovorans SPH-1   11 7
No Yes Polaromonas sp. JS666   2 1
No Yes Polaromonas naphthalenivorans CJ2   1 1
No Yes Variovorax paradoxus S110   18 9
No Yes Acidovorax citrulli AAC00-1   24 12
No Yes Acidovorax avenae subsp. avenae ATCC 19860   16 8
No Yes Collimonas fungivorans Ter331   16 9
No Yes Herbaspirillum seropedicae SmR1   20 11
No Yes Pusillimonas sp. T7-7   4 2
No Yes Advenella kashmirensis WT001   11 6
No Yes Taylorella asinigenitalis MCE3   8 4
No Yes Taylorella equigenitalis MCE9   8 4
No Yes Bordetella petrii DSM 12804   8 4
No Yes Bordetella avium 197N   2 1
No Yes Bordetella bronchiseptica RB50   4 2
No Yes Achromobacter xylosoxidans A8   8 4
No Yes Achromobacter xylosoxidans   6 3
No Yes Nitrosomonas sp. Is79A3   1 1
No Yes Sideroxydans lithotrophicus ES-1   3 2
No Yes Methylovorus sp. MP688   4 2
No Yes Methylovorus glucosetrophus SIP3-4   4 2
No Yes Methylobacillus flagellatus KT   2 2
No Yes Caulobacter sp. K31   2 2
No Yes Erythrobacter litoralis HTCC2594   1 1
No Yes Novosphingobium sp. PP1Y   1 1
No Yes Dinoroseobacter shibae DFL 12   2 2
No Yes Pseudovibrio sp. FO-BEG1   8 5
No Yes Jannaschia sp. CCS1   2 1
No Yes Ruegeria sp. TM1040   1 1
No Yes Roseobacter litoralis Och 149   1 1
No Yes Roseobacter denitrificans OCh 114   1 1
No Yes Rhodobacter sphaeroides ATCC 17029   3 2
No Yes Paracoccus denitrificans PD1222   2 1
No Yes Tistrella mobilis KA081020-065   5 3
No Yes Magnetospirillum magneticum AMB-1   1 1
No Yes Rhodospirillum centenum SW   1 1
No Yes Azospirillum lipoferum 4B   4 2
No Yes Azospirillum sp. B510   6 3
No Yes Azospirillum brasilense Sp245   2 1
No Yes Gluconacetobacter xylinus NBRC 3288   5 3
No Yes Granulibacter bethesdensis CGDNIH1   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   2 1
No Yes Acidiphilium multivorum AIU301   3 2
No Yes Acidiphilium cryptum JF-5   3 2
No Yes Gluconobacter oxydans 621H   4 3
No Yes Polymorphum gilvum SL003B-26A1   1 1
No Yes Wolbachia endosymbiont of Culex quinquefasciatus Pel   2 2
No Yes Wolbachia sp. wRi   1 1
No Yes Xanthobacter autotrophicus Py2   2 1
No Yes Azorhizobium caulinodans ORS 571   3 2
No Yes Methylobacterium sp. 4-46   1 1
No Yes Methylobacterium nodulans ORS 2060   5 3
No Yes Methylobacterium radiotolerans JCM 2831   2 1
No Yes Ochrobactrum anthropi ATCC 49188   2 2
No Yes Rhizobium etli CIAT 652   4 2
No Yes Rhizobium leguminosarum bv. viciae 3841   2 1
No Yes Agrobacterium tumefaciens str. C58   5 3
No Yes Agrobacterium sp. H13-3   2 1
No Yes Agrobacterium vitis S4   13 7
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   2 1
No Yes Mesorhizobium loti MAFF303099   3 2
No Yes Methylocella silvestris BL2   2 1
No Yes Hyphomicrobium denitrificans ATCC 51888   2 1
No Yes Oligotropha carboxidovorans OM4   1 1
No Yes Nitrobacter hamburgensis X14   2 2
No Yes Bradyrhizobium japonicum USDA 110   2 1
No Yes Bradyrhizobium sp. ORS 278   1 1
No Yes Bartonella tribocorum CIP 105476   10 10
No Yes Bartonella henselae str. Houston-1   1 1
No Yes Bartonella grahamii as4aup   5 5
No Yes Saccharophagus degradans 2-40   3 2
No Yes Teredinibacter turnerae T7901   4 3
No Yes Cellvibrio japonicus Ueda107   2 2
No Yes Aggregatibacter aphrophilus NJ8700   5 3
No Yes Aggregatibacter actinomycetemcomitans D7S-1   16 9
No Yes Gallibacterium anatis UMN179   3 3
No Yes Haemophilus parasuis SH0165   2 2
No Yes Haemophilus parainfluenzae T3T1   1 1
No Yes Actinobacillus pleuropneumoniae serovar 5b str. L20   1 1
No Yes Tolumonas auensis DSM 9187   6 3
No Yes Aeromonas veronii B565   1 1
No Yes Aeromonas salmonicida subsp. salmonicida A449   3 2
No Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966   6 3
No Yes Aliivibrio salmonicida LFI1238   4 2
No Yes Vibrio fischeri MJ11   8 4
No Yes Vibrio sp. Ex25   4 2
No Yes Vibrio harveyi ATCC BAA-1116   5 3
No Yes Vibrio parahaemolyticus RIMD 2210633   4 2
No Yes Vibrio splendidus LGP32   4 3
No Yes Vibrio anguillarum 775   8 4
No Yes Vibrio furnissii NCTC 11218   10 5
No Yes Vibrio vulnificus MO6-24/O   2 1
No Yes Vibrio cholerae O395   10 5
No Yes Photobacterium profundum SS9   2 1
No Yes Psychromonas ingrahamii 37   4 2
No Yes Psychromonas sp. CNPT3   2 1
No Yes Shewanella denitrificans OS217   1 1
No Yes Shewanella oneidensis MR-1   2 1
No Yes Shewanella woodyi ATCC 51908   2 1
No Yes Shewanella frigidimarina NCIMB 400   2 1
No Yes Pseudoalteromonas sp. SM9913   2 1
No Yes Marinobacter adhaerens HP15   5 3
No Yes Marinobacter sp. BSs20148   4 4
No Yes Marinobacter hydrocarbonoclasticus ATCC 49840   6 3
No Yes Marinobacter aquaeolei VT8   10 5
No Yes Hahella chejuensis KCTC 2396   4 2
No Yes Marinomonas posidonica IVIA-Po-181   8 4
No Yes Marinomonas sp. MWYL1   7 4
No Yes Marinomonas mediterranea MMB-1   7 5
No Yes Chromohalobacter salexigens DSM 3043   7 4
No Yes Halomonas elongata DSM 2581   6 3
No Yes Methylomicrobium alcaliphilum   5 3
No Yes Methylomonas methanica MC09   3 2
No Yes Methylococcus capsulatus str. Bath   1 1
No Yes Rhodanobacter denitrificans   1 1
No Yes Frateuria aurantia DSM 6220   3 2
No Yes Stenotrophomonas maltophilia K279a   2 2
No Yes Xylella fastidiosa M23   2 2
No Yes Xanthomonas axonopodis pv. citri str. 306   2 1
No Yes Xanthomonas oryzae pv. oryzae PXO99A   31 20
No Yes Alkalilimnicola ehrlichii MLHE-1   7 4
No Yes Thioalkalivibrio sulfidophilus HL-EbGr7   1 1
No Yes Halorhodospira halophila SL1   3 2
No Yes Thiocystis violascens DSM 198   2 1
No Yes Nitrosococcus halophilus Nc4   1 1
No Yes Nitrosococcus oceani ATCC 19707   1 1
No Yes gamma proteobacterium HdN1   2 1
No Yes Photorhabdus asymbiotica   36 21
No Yes Photorhabdus luminescens subsp. laumondii TTO1   30 19
No Yes Xenorhabdus bovienii SS-2004   19 10
No Yes Xenorhabdus nematophila ATCC 19061   15 9
No Yes Providencia stuartii MRSN 2154   14 7
No Yes Proteus mirabilis HI4320   11 6
No Yes Edwardsiella ictaluri 93-146   3 2
No Yes Edwardsiella tarda EIB202   2 1
No Yes Rahnella sp. Y9602   16 10
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   19 11
No Yes Yersinia pseudotuberculosis IP 31758   21 11
No Yes Yersinia pestis Pestoides F   14 7
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   3 2
No Yes Serratia sp. AS12   2 2
No Yes Serratia sp. ATCC 39006   1 1
No Yes Serratia plymuthica AS9   2 2
No Yes Serratia proteamaculans 568   9 6
No Yes Dickeya dadantii Ech703   1 1
No Yes Dickeya zeae Ech1591   12 7
No Yes Pectobacterium wasabiae WPP163   21 11
No Yes Pectobacterium sp. SCC3193   27 14
No Yes Pectobacterium atrosepticum SCRI1043   12 7
No Yes Pectobacterium carotovorum subsp. carotovorum PC1   9 6
No Yes Sodalis glossinidius str. 'morsitans'   3 2
No Yes Pantoea sp. At-9b   5 3
No Yes Pantoea vagans C9-1   3 2
No Yes Pantoea ananatis LMG 20103   6 4
No Yes Erwinia tasmaniensis Et1/99   5 3
No Yes Erwinia sp. Ejp617   4 2
No Yes Erwinia billingiae Eb661   9 6
No Yes Erwinia pyrifoliae Ep1/96   6 3
No Yes Erwinia amylovora ATCC 49946   9 5
No Yes Escherichia blattae DSM 4481   8 4
No Yes Cronobacter turicensis z3032   17 9
No Yes Cronobacter sakazakii ES15   18 9
No Yes Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)   2 1
No Yes Enterobacteriaceae bacterium strain FGI 57   6 3
No Yes Shigella sonnei Ss046   9 5
No Yes Shigella flexneri 5 str. 8401   6 4
No Yes Shigella dysenteriae Sd197   1 1
No Yes Shigella boydii CDC 3083-94   4 4
No Yes Salmonella bongori NCTC 12419   8 5
No Yes Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594   4 3
No Yes Klebsiella oxytoca E718   9 5
No Yes Klebsiella variicola At-22   2 1
No Yes Klebsiella pneumoniae NTUH-K2044   4 2
No Yes Enterobacter aerogenes KCTC 2190   9 5
No Yes Escherichia fergusonii ATCC 35469   10 7
No Yes Escherichia coli 'BL21-Gold(DE3)pLysS AG'   2 2
No Yes Enterobacter sp. R4-368   16 9
No Yes Enterobacter sp. 638   6 4
No Yes Enterobacter asburiae LF7a   9 5
No Yes Enterobacter cloacae subsp. dissolvens SDM   5 3
No Yes Citrobacter rodentium ICC168   15 9
No Yes Citrobacter koseri ATCC BAA-895   2 1
No Yes Azotobacter vinelandii DJ   6 4
No Yes Pseudomonas sp. TKP   7 4
No Yes Pseudomonas sp. UW4   8 4
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   16 8
No Yes Pseudomonas entomophila L48   23 12
No Yes Pseudomonas syringae pv. tomato str. DC3000   14 8
No Yes Pseudomonas fulva 12-X   4 2
No Yes Pseudomonas putida F1   6 3
No Yes Pseudomonas protegens Pf-5   9 5
No Yes Pseudomonas fluorescens SBW25   7 4
No Yes Pseudomonas mendocina ymp   8 4
No Yes Pseudomonas aeruginosa UCBPP-PA14   23 12
No Yes Pseudomonas sp. VLB120   9 6
No Yes Psychrobacter sp. G   1 1
No Yes Acinetobacter oleivorans DR1   5 5
No Yes Acinetobacter calcoaceticus PHEA-2   5 5
No Yes Acinetobacter baumannii ATCC 17978   3 3
No Yes Acinetobacter sp. ADP1   4 4
No Yes Thiomicrospira crunogena XCL-2   1 1
No Yes Francisella cf. novicida 3523   1 1
No Yes Methanocella arvoryzae MRE50   1 1
No Yes Methanocella paludicola SANAE   1 1
No Yes Archaeoglobus profundus DSM 5631   1 1
No Yes Natrinema sp. J7-2   1 1
No Yes Natrialba magadii ATCC 43099   2 2
No Yes Halogeometricum borinquense DSM 11551   1 1
No Yes Halalkalicoccus jeotgali B3   1 1
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 2 1
No Yes Synechococcus elongatus PCC 6301   1 1
No Yes Crinalium epipsammum PCC 9333   1 1
No Yes Oscillatoria acuminata PCC 6304   1 1
No Yes Arthrospira platensis NIES-39   1 1
No Yes Cyanothece sp. PCC 7822   1 1
No Yes Cyanothece sp. PCC 7424   2 2
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   1 1
No Yes Calothrix parietina Calothrix sp. PCC 6303   2 2
No Yes Cylindrospermum stagnale PCC 7417   1 1
No Yes Anabaena cylindrica PCC 7122   1 1
No Yes Frankia sp. EuI1c   1 1
No Yes Streptomyces albus J1074   1 1
No Yes Streptomyces rapamycinicus NRRL 5491   1 1
No Yes Streptomyces davawensis JCM 4913   1 1
No Yes Streptomyces fulvissimus DSM 40593   1 1
No Yes Streptomyces venezuelae ATCC 10712   1 1
No Yes Streptomyces collinus Tu 365   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   1 1
No Yes Saccharothrix espanaensis DSM 44229   2 2
No Yes Amycolatopsis mediterranei RB   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis orientalis HCCB10007   1 1
No Yes Bifidobacterium longum subsp. infantis 157F   1 1
No Yes Deinococcus peraridilitoris DSM 19664   2 2
No Yes [Clostridium] stercorarium Clostridiu subsp. stercorarium DSM 8532   2 2
No Yes Faecalibacterium prausnitzii L2-6   1 1
No Yes Ruminococcus champanellensis 18P13   1 1
No Yes Desulfosporosinus meridiei DSM 13257   2 2
No Yes Desulfitobacterium hafniense DCB-2   4 4
No Yes Clostridium difficile BI1   4 4
No Yes Clostridium difficile R20291   3 3
No Yes Clostridium difficile CD196   3 3
No Yes Clostridium saccharolyticum Clostridium cf. saccharolyticum K10   1 1
No Yes Roseburia intestinalis XB6B4   1 1
No Yes Candidatus Arthromitus sp. SFB-mouse-Yit   2 2
No Yes Clostridium sp. SY8519   3 3
No Yes Clostridium saccharobutylicum DSM 13864   15 15
No Yes Clostridium autoethanogenum DSM 10061   1 1
No Yes Clostridium saccharoperbutylacetonicum N1-4(HMT)   12 12
No Yes Clostridium kluyveri NBRC 12016   2 2
No Yes Clostridium tetani genome 12124569   1 1
No Yes Clostridium botulinum H04402 065   3 3
No Yes Clostridium botulinum F str. 230613   3 3
No Yes Clostridium botulinum F str. Langeland   3 3
No Yes Clostridium botulinum E3 str. Alaska E43   2 2
No Yes Clostridium botulinum B1 str. Okra   1 1
No Yes Clostridium botulinum Ba4 str. 657   7 7
No Yes Clostridium botulinum A2 str. Kyoto   6 6
No Yes Clostridium botulinum A3 str. Loch Maree   1 1
No Yes Clostridium botulinum A str. Hall   1 1
No Yes Clostridium botulinum A str. ATCC 19397   1 1
No Yes Thermoanaerobacterium saccharolyticum JW/SL-YS485   1 1
No Yes Lactobacillus helveticus CNRZ32   2 2
No Yes Lactobacillus brevis KB290   1 1
No Yes Paenibacillus sp. Y412MC10   3 3
No Yes Paenibacillus larvae subsp. larvae DSM 25430   2 2
No Yes Paenibacillus polymyxa CR1   12 12
No Yes Paenibacillus polymyxa SC2   11 11
No Yes Paenibacillus polymyxa E681   9 9
No Yes Geobacillus sp. Y4.1MC1   2 2
No Yes Bacillus amyloliquefaciens subsp. plantarum sequencing   2 2
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5033   2 2
No Yes Bacillus amyloliquefaciens subsp. plantarum AS43.3   2 2
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5113   2 2
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5036   2 2
No Yes Bacillus amyloliquefaciens subsp. plantarum CAU B946   2 2
No Yes Bacillus amyloliquefaciens LFB112   2 2
No Yes Bacillus amyloliquefaciens IT-45   2 2
No Yes Bacillus amyloliquefaciens XH7   2 2
No Yes Bacillus amyloliquefaciens LL3   2 2
No Yes Bacillus amyloliquefaciens TA208   2 2
No Yes Bacillus amyloliquefaciens DSM 7   2 2
No Yes Bacillus licheniformis 9945A   2 2
No Yes Bacillus subtilis PY79   4 4
No Yes Bacillus subtilis XF-1   2 2
No Yes Bacillus subtilis QB928   2 2
No Yes Bacillus subtilis BSn5   4 4
No Yes Bacillus subtilis subsp. subtilis str. BAB-1   2 2
No Yes Bacillus subtilis subsp. subtilis str. BSP1   2 2
No Yes Bacillus subtilis subsp. subtilis str. RO-NN-1   2 2
No Yes Bacillus subtilis subsp. subtilis 6051-HGW   4 4
No Yes Bacillus subtilis subsp. spizizenii TU-B-10   6 6
No Yes Bacillus subtilis subsp. spizizenii str. W23   2 2
No Yes Bacillus subtilis subsp. natto BEST195   2 2
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   2 2
No Yes Echinicola vietnamensis DSM 17526   1 1
No Yes Prevotella dentalis DSM 3688   2 2
No Yes Bacteroides fragilis 638R   1 1
No Yes Bacteroides fragilis NCTC 9343   1 1
No Yes Nonlabens dokdonensis DSW-6   1 1
No Yes Singulisphaera acidiphila DSM 18658   2 1
No Yes Brachyspira pilosicoli WesB   1 1
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Fusobacterium nucleatum subsp. vincentii 3_1_36A2   2 2
No Yes Campylobacter jejuni RM1221   2 2
No Yes Campylobacter jejuni subsp. jejuni 00-2544   1 1
No Yes Campylobacter jejuni subsp. jejuni 00-2538   1 1
No Yes Campylobacter jejuni subsp. jejuni 00-2425   1 1
No Yes Campylobacter jejuni subsp. jejuni ICDCCJ07001   1 1
No Yes Campylobacter jejuni subsp. jejuni S3   1 1
No Yes Desulfocapsa sulfexigens DSM 10523   2 1
No Yes Desulfobacula toluolica Tol2   1 1
No Yes Lawsonia intracellularis N343   2 1
No Yes Desulfovibrio hydrothermalis AM13 = DSM 14728   6 4
No Yes Desulfovibrio vulgaris RCH1   5 3
No Yes Desulfovibrio vulgaris str. 'Miyazaki F'   3 2
No Yes Desulfovibrio vulgaris str. Hildenborough   7 4
No Yes Geobacter sp. M18   3 2
No Yes Geobacter sulfurreducens PCA   3 2
No Yes Sorangium cellulosum So0157-2   67 37
No Yes Myxococcus stipitatus DSM 14675   22 12
No Yes Neisseria meningitidis WUE 2594   4 2
No Yes Neisseria meningitidis M04-240196   2 1
No Yes Neisseria meningitidis M01-240149   2 1
No Yes Neisseria meningitidis NZ-05/33   2 1
No Yes Neisseria meningitidis M01-240355   2 1
No Yes Neisseria meningitidis 8013   2 1
No Yes Neisseria meningitidis Z2491   4 2
No Yes Neisseria meningitidis H44/76   2 1
No Yes Neisseria meningitidis alpha710   3 2
No Yes Neisseria meningitidis MC58   2 1
No Yes Burkholderia phenoliruptrix BR3459a   12 6
No Yes Ralstonia pickettii 12J   2 1
No Yes Ralstonia solanacearum FQY_4   28 15
No Yes Ralstonia solanacearum Po82   16 10
No Yes Ralstonia solanacearum PSI07   22 12
No Yes Ralstonia solanacearum CMR15   19 10
No Yes Ralstonia solanacearum GMI1000   25 13
No Yes Burkholderia sp. YI23   17 9
No Yes Burkholderia sp. CCGE1003   10 5
No Yes Burkholderia sp. CCGE1001   11 6
No Yes Burkholderia sp. KJ006   23 12
No Yes Burkholderia thailandensis MSMB121   21 11
No Yes Burkholderia pseudomallei MSHR305   30 16
No Yes Burkholderia pseudomallei NCTC 13179   26 14
No Yes Burkholderia pseudomallei BPC006   27 14
No Yes Burkholderia pseudomallei 1026b   27 15
No Yes Burkholderia pseudomallei MSHR346   8 5
No Yes Burkholderia pseudomallei 668   26 13
No Yes Burkholderia pseudomallei 1710b   27 14
No Yes Burkholderia pseudomallei K96243   28 15
No Yes Burkholderia mallei NCTC 10229   14 7
No Yes Burkholderia mallei NCTC 10247   14 7
No Yes Burkholderia mallei ATCC 23344   14 7
No Yes Burkholderia lata   26 13
No Yes Burkholderia ambifaria MC40-6   32 16
No Yes Burkholderia cenocepacia MC0-3   19 10
No Yes Burkholderia cenocepacia AU 1054   14 7
No Yes Burkholderia cenocepacia J2315   23 13
No Yes Burkholderia multivorans ATCC 17616   11 6
No Yes Burkholderia cepacia GG4   12 6
No Yes Alicycliphilus denitrificans BC   1 1
No Yes Variovorax paradoxus B4   18 9
No Yes Variovorax paradoxus EPS   30 15
No Yes Taylorella asinigenitalis 14/45   9 4
No Yes Taylorella equigenitalis 14/56   8 4
No Yes Taylorella equigenitalis ATCC 35865   8 4
No Yes Bordetella parapertussis Bpp5   2 1
No Yes Bordetella bronchiseptica MO149   2 1
No Yes Bordetella bronchiseptica 253   2 1
No Yes Achromobacter xylosoxidans NBRC 15126 = ATCC 27061   6 3
No Yes Zymomonas mobilis subsp. mobilis CP4   1 1
No Yes Phaeobacter gallaeciensis DSM 17395   2 2
No Yes Leisingera methylohalidivorans DSM 14336   2 1
No Yes Rhodobacter sphaeroides KD131   2 1
No Yes Rhodobacter sphaeroides ATCC 17025   1 1
No Yes Rhodobacter sphaeroides 2.4.1   3 2
No Yes Paracoccus aminophilus JCM 7686   6 3
No Yes Gluconacetobacter diazotrophicus PAl 5   2 1
No Yes Gluconobacter oxydans H24   1 1
No Yes Acetobacter pasteurianus 386B   2 1
No Yes Wolbachia endosymbiont of Drosophila melanogaster   1 1
No Yes Wolbachia endosymbiont of Drosophila simulans wHa   1 1
No Yes Wolbachia endosymbiont of Drosophila simulans wNo   1 1
No Yes Sinorhizobium fredii USDA 257   2 1
No Yes Rhizobium etli bv. mimosae str. Mim1   2 1
No Yes Rhizobium tropici CIAT 899   1 1
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Rhodopseudomonas palustris TIE-1   1 1
No Yes Bradyrhizobium sp. BTAi1   2 1
No Yes Bradyrhizobium oligotrophicum S58   2 2
No Yes Bradyrhizobium japonicum USDA 6   2 1
No Yes Bartonella australis Aust/NH1   2 2
No Yes Bartonella vinsonii subsp. berkhoffii str. Winnie   8 8
No Yes Simiduia agarivorans SA1 = DSM 21679   2 1
No Yes Mannheimia succiniciproducens MBEL55E   1 1
No Yes Bibersteinia trehalosi USDA-ARS-USMARC-192   3 2
No Yes Aggregatibacter actinomycetemcomitans ANH9381   2 1
No Yes Haemophilus somnus 2336   3 2
No Yes Mannheimia haemolytica USMARC_2286   4 3
No Yes Mannheimia haemolytica M42548   5 4
No Yes Mannheimia haemolytica D174   5 4
No Yes Mannheimia haemolytica D171   3 2
No Yes Mannheimia haemolytica D153   5 4
No Yes Mannheimia haemolytica USDA-ARS-USMARC-183   3 3
No Yes Mannheimia haemolytica USDA-ARS-USMARC-185   1 1
No Yes Pasteurella multocida subsp. multocida str. HN06   1 1
No Yes Haemophilus parasuis ZJ0906   3 2
No Yes Haemophilus influenzae KR494   2 1
No Yes Haemophilus influenzae F3047   1 1
No Yes Haemophilus influenzae F3031   1 1
No Yes Haemophilus influenzae 10810   3 2
No Yes Haemophilus influenzae R2866   1 1
No Yes Actinobacillus suis H91-0380   1 1
No Yes Actinobacillus pleuropneumoniae serovar 7 str. AP76   1 1
No Yes Aeromonas hydrophila ML09-119   5 3
No Yes Vibrio fischeri ES114   6 3
No Yes Vibrio parahaemolyticus BB22OP   4 2
No Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749   4 2
No Yes Vibrio anguillarum Listonella anguillarum M3   8 4
No Yes Vibrio nigripulchritudo VibrioScope   4 2
No Yes Vibrio vulnificus CMCP6   3 2
No Yes Vibrio vulnificus YJ016   2 1
No Yes Vibrio cholerae LMA3984-4   2 1
No Yes Vibrio cholerae M66-2   6 3
No Yes Vibrio cholerae O395   10 5
No Yes Vibrio cholerae IEC224   6 3
No Yes Vibrio cholerae O1 str. 2010EL-1786   6 3
No Yes Vibrio cholerae MJ-1236   6 3
No Yes Vibrio cholerae O1 biovar El Tor str. N16961   6 3
No Yes Shewanella baltica BA175   2 1
No Yes Shewanella baltica OS678   1 1
No Yes Shewanella baltica OS195   1 1
No Yes Alcanivorax dieselolei B5   10 5
No Yes Thalassolituus oleivorans MIL-1   4 2
No Yes Stenotrophomonas maltophilia D457   2 2
No Yes Stenotrophomonas maltophilia R551-3   1 1
No Yes Xylella fastidiosa subsp. fastidiosa GB514   2 2
No Yes Xylella fastidiosa M12   2 2
No Yes Xylella fastidiosa Temecula1   2 2
No Yes Xylella fastidiosa 9a5c   2 2
No Yes Xanthomonas citri subsp. citri Aw12879   4 3
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   4 2
No Yes Xanthomonas axonopodis pv. citrumelo F1   4 2
No Yes Xanthomonas axonopodis Xac29-1   2 1
No Yes Xanthomonas oryzae pv. oryzicola BLS256   41 27
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   28 17
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   24 16
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   1 1
No Yes Thioalkalivibrio nitratireducens DSM 14787   1 1
No Yes Thioflavicoccus mobilis 8321   1 1
No Yes Proteus mirabilis BB2000   4 2
No Yes Morganella morganii subsp. morganii KT   2 2
No Yes Edwardsiella tarda C07-087   6 4
No Yes Edwardsiella tarda FL6-60   3 2
No Yes Rahnella aquatilis HX2   17 12
No Yes Yersinia pseudotuberculosis PB1/+   18 10
No Yes Yersinia pseudotuberculosis YPIII   19 11
No Yes Yersinia pseudotuberculosis IP 32953   21 12
No Yes Yersinia pestis biovar Microtus str. 91001   16 8
No Yes Yersinia pestis A1122   16 8
No Yes Yersinia pestis Z176003   16 8
No Yes Yersinia pestis D182038   17 10
No Yes Yersinia pestis D106004   16 8
No Yes Yersinia pestis biovar Medievalis str. Harbin 35   16 8
No Yes Yersinia pestis Nepal516   16 8
No Yes Yersinia pestis Antiqua   16 8
No Yes Yersinia pestis Angola   10 5
No Yes Yersinia pestis CO92   16 8
No Yes Yersinia pestis KIM10+   16 8
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   4 3
No Yes Yersinia enterocolitica subsp. palearctica Y11   6 5
No Yes Serratia sp. AS13   2 2
No Yes Serratia plymuthica S13   1 1
No Yes Serratia marcescens FGI94   13 7
No Yes Serratia marcescens WW4   9 5
No Yes Dickeya dadantii Ech586   6 4
No Yes Dickeya dadantii 3937   8 5
No Yes Pectobacterium carotovorum subsp. carotovorum PCC21   7 4
No Yes Pantoea ananatis LMG 5342   5 3
No Yes Pantoea ananatis PA13   6 4
No Yes Pantoea ananatis AJ13355   8 5
No Yes Erwinia pyrifoliae DSM 12163   6 3
No Yes Erwinia amylovora CFBP1430   8 4
No Yes Cronobacter sakazakii CMCC 45402   11 6
No Yes Cronobacter sakazakii SP291   14 9
No Yes Cronobacter sakazakii ATCC BAA-894   16 8
No Yes Shigella sonnei 53G   13 8
No Yes Shigella flexneri 2002017   4 3
No Yes Shigella flexneri 2a str. 2457T   3 2
No Yes Shigella flexneri 2a str. 301   4 3
No Yes Shigella dysenteriae 1617   1 1
No Yes Shigella boydii Sb227   2 2
No Yes Salmonella bongori N268-08   11 8
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   13 7
No Yes Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736   8 6
No Yes Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992   2 2
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   7 4
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   5 3
No Yes Salmonella enterica subsp. enterica serovar Enteritidis str. P125109   2 1
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   4 3
No Yes Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1   6 5
No Yes Salmonella enterica subsp. enterica serovar Newport str. SL254   6 5
No Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853   6 4
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   5 3
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   6 5
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798   8 6
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   7 5
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   9 7
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   6 5
No Yes Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2   7 5
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   8 6
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   9 7
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   8 6
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   6 5
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   7 5
No Yes Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12   6 5
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty21a   6 5
No Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18   6 5
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty2   6 5
No Yes Salmonella enterica serovar Bovismorbificans genomics   5 4
No Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. 24249   5 4
No Yes Salmonella enterica subsp. enterica serovar Agona str. SL483   5 4
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   8 6
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   2 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601   3 2
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150   3 2
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   4 3
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. B182   4 3
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   5 4
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476   4 3
No Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004   4 3
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67   3 2
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078   3 2
No Yes Salmonella enterica subsp. enterica serovar Thompson str. RM6836   4 3
No Yes Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91   3 2
No Yes Klebsiella oxytoca KCTC 1686   11 6
No Yes Klebsiella pneumoniae JM45   6 4
No Yes Klebsiella pneumoniae CG43   4 2
No Yes Klebsiella pneumoniae KCTC 2242   5 3
No Yes Klebsiella pneumoniae 342   6 3
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   4 2
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   6 4
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   7 4
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   4 3
No Yes Enterobacter aerogenes EA1509E   10 6
No Yes Escherichia coli E24377A   11 6
No Yes Escherichia coli E. coli PMV-1   12 8
No Yes Escherichia coli JJ1886   11 8
No Yes Escherichia coli LY180   15 9
No Yes Escherichia coli APEC O78   10 6
No Yes Escherichia coli O7:K1 str. CE10   9 8
No Yes Escherichia coli O104:H4 str. 2009EL-2050   11 8
No Yes Escherichia coli O104:H4 str. 2009EL-2071   12 9
No Yes Escherichia coli O104:H4 str. 2011C-3493   11 8
No Yes Escherichia coli NA114   11 7
No Yes Escherichia coli P12b   3 2
No Yes Escherichia coli str. 'clone D i2'   8 5
No Yes Escherichia coli str. 'clone D i14'   8 5
No Yes Escherichia coli UM146   10 6
No Yes Escherichia coli 042   11 7
No Yes Escherichia coli Xuzhou21   10 7
No Yes Escherichia coli IHE3034   14 10
No Yes Escherichia coli UMNK88   12 8
No Yes Escherichia coli O83:H1 str. NRG 857C   10 6
No Yes Escherichia coli ABU 83972   8 5
No Yes Escherichia coli KO11FL   16 10
No Yes Escherichia coli KO11FL   16 10
No Yes Escherichia coli LF82   13 8
No Yes Escherichia coli ED1a   9 7
No Yes Escherichia coli IAI39   8 7
No Yes Escherichia coli UMN026   10 7
No Yes Escherichia coli 55989   14 10
No Yes Escherichia coli S88   14 10
No Yes Escherichia coli IAI1   6 4
No Yes Escherichia coli W   16 10
No Yes Escherichia coli W   16 10
No Yes Escherichia coli ATCC 8739   6 4
No Yes Escherichia coli BL21(DE3)   3 3
No Yes Escherichia coli BL21(DE3)   3 3
No Yes Escherichia coli SMS-3-5   1 1
No Yes Escherichia coli SE15   3 2
No Yes Escherichia coli SE11   13 9
No Yes Escherichia coli APEC O1   13 9
No Yes Escherichia coli O103:H2 str. 12009   15 11
No Yes Escherichia coli UTI89   12 8
No Yes Escherichia coli 536   9 5
No Yes Escherichia coli HS   7 4
No Yes Escherichia coli ETEC H10407   12 8
No Yes Escherichia coli O55:H7 str. RM12579   13 10
No Yes Escherichia coli O55:H7 str. CB9615   14 11
No Yes Escherichia coli O26:H11 str. 11368   13 11
No Yes Escherichia coli CFT073   10 7
No Yes Escherichia coli O111:H- str. 11128   12 9
No Yes Escherichia coli O127:H6 str. E2348/69   7 6
No Yes Escherichia coli O157:H7 str. TW14359   13 10
No Yes Escherichia coli O157:H7 str. EC4115   14 11
No Yes Escherichia coli O157:H7 str. Sakai   13 9
No Yes Escherichia coli O157:H7 str. EDL933   10 7
No Yes Escherichia coli BW2952   1 1
No Yes Escherichia coli B str. REL606   4 2
No Yes Enterobacter cloacae SCF1   2 2
No Yes Enterobacter cloacae EcWSU1   8 5
No Yes Enterobacter cloacae subsp. cloacae ENHKU01   8 5
No Yes Enterobacter cloacae subsp. cloacae NCTC 9394   4 2
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   6 4
No Yes Azotobacter vinelandii CA6   6 4
No Yes Azotobacter vinelandii CA   6 4
No Yes Pseudomonas denitrificans ATCC 13867   10 5
No Yes Pseudomonas syringae pv. phaseolicola 1448A   10 6
No Yes Pseudomonas syringae pv. syringae B728a   11 6
No Yes Pseudomonas stutzeri CCUG 29243   6 3
No Yes Pseudomonas stutzeri DSM 10701   8 4
No Yes Pseudomonas stutzeri DSM 4166   2 1
No Yes Pseudomonas stutzeri RCH2   6 3
No Yes Pseudomonas stutzeri ATCC 17588 = LMG 11199   6 3
No Yes Pseudomonas monteilii SB3101   8 5
No Yes Pseudomonas monteilii SB3078   8 5
No Yes Pseudomonas putida H8234   4 3
No Yes Pseudomonas putida HB3267   7 4
No Yes Pseudomonas putida NBRC 14164   6 3
No Yes Pseudomonas putida DOT-T1E   10 5
No Yes Pseudomonas putida S16   12 7
No Yes Pseudomonas putida W619   7 4
No Yes Pseudomonas putida ND6   8 5
No Yes Pseudomonas putida KT2440   11 6
No Yes Pseudomonas putida GB-1   9 5
No Yes Pseudomonas protegens CHA0   10 6
No Yes Pseudomonas poae RE*1-1-14   8 5
No Yes Pseudomonas fluorescens F113   18 10
No Yes Pseudomonas fluorescens A506   8 5
No Yes Pseudomonas fluorescens R124   18 10
No Yes Pseudomonas fluorescens Pf0-1   23 12
No Yes Pseudomonas resinovorans NBRC 106553   6 4
No Yes Pseudomonas mendocina NK-01   3 2
No Yes Pseudomonas aeruginosa SCV20265   19 10
No Yes Pseudomonas aeruginosa MTB-1   20 11
No Yes Pseudomonas aeruginosa LES431   17 9
No Yes Pseudomonas aeruginosa RP73   20 11
No Yes Pseudomonas aeruginosa B136-33   21 11
No Yes Pseudomonas aeruginosa PA1R   22 12
No Yes Pseudomonas aeruginosa PA1   22 12
No Yes Pseudomonas aeruginosa DK2   20 10
No Yes Pseudomonas aeruginosa NCGM2.S1   22 12
No Yes Pseudomonas aeruginosa M18   19 10
No Yes Pseudomonas aeruginosa LESB58   19 10
No Yes Pseudomonas aeruginosa PA7   15 8
No Yes Pseudomonas aeruginosa PAO1   21 11
No Yes Acinetobacter genomosp. 13TU RUH2624   4 4
No Yes Acinetobacter sp. SH024   2 2
No Yes Acinetobacter calcoaceticus ruh2202   4 4
No Yes Acinetobacter baumannii ZW85-1   4 4
No Yes Acinetobacter baumannii TYTH-1   3 3
No Yes Acinetobacter baumannii BJAB0868   3 3
No Yes Acinetobacter baumannii BJAB0715   5 4
No Yes Acinetobacter baumannii BJAB07104   3 3
No Yes Acinetobacter baumannii TCDC-AB0715   5 4
No Yes Acinetobacter baumannii D1279779   3 3
No Yes Acinetobacter baumannii MDR-TJ   4 4
No Yes Acinetobacter baumannii 1656-2   5 4
No Yes Acinetobacter baumannii ATCC 19606   4 4
No Yes Acinetobacter baumannii AB307-0294   3 3
No Yes Acinetobacter baumannii AYE   3 3
No Yes Acinetobacter baumannii SDF   3 3
No Yes Acinetobacter baumannii MDR-ZJ06   5 4
No Yes Acinetobacter baumannii AB0057   3 3
No Yes Acinetobacter baumannii ACICU   4 4
No Yes Acinetobacter radioresistens SH164   1 1
No Yes Acinetobacter junii SH205   1 1
No Yes Acinetobacter johnsonii SH046   2 2
No Yes Methanomethylovorans hollandica DSM 15978   2 2
No Yes Halovivax ruber XH-70   1 1
No Yes Lotus japonicus (Early assembly)   1 1
No Yes Ricinus communis (Early assembly) Castor bean 6 5
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 2 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 2 1
No Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC)   3 2
No Yes 1_050719N (meta-genome)   4 3
No Yes 2_050719S (meta-genome)   4 3
No Yes 3_050719R (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   7 5
No Yes 5_050719P (meta-genome)   6 3
No Yes 5_Below_upper_mesopelagic (meta-genome)   2 1
No Yes 6_Upper_euphotic (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   3 3
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   56 41
No Yes Combined (meta-genome)   197 173
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   211 176
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   80 65
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   60 50
No Yes Dump bottom (Dump bottom) (meta-genome)   78 75
No Yes Dump top (Dump top) (meta-genome)   52 48
No Yes Endophytic microbiome from Rice (meta-genome)   23 20
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   7 6
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   10 9
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   4 3
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   5 5
No Yes Fungus garden combined (combined) (meta-genome)   79 66
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   193 166
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   216 186
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   3 2
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   3 2
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   35 28
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   4 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   3 3
No Yes Human Gut Community Subject 7 (meta-genome)   2 2
No Yes Human Gut Community Subject 8 (meta-genome)   4 4
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   5 4
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   9 9
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   8 8
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   37 30
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   4 3
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   6 5
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   5 5
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   9 8
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   13 9
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   7 7
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   4 4
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   48 37
No Yes Mouse Gut Community lean2 (meta-genome)   1 1
No Yes Mouse Gut Community lean3 (meta-genome)   2 2
No Yes Mouse Gut Community ob1 (meta-genome)   3 3
No Yes NCBI 2017_08 genome   284831 185886
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   48 37
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   2 2
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   59 50
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   34 28
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   44 35
No Yes Single-cell genome from subgingival tooth surface TM7a (meta-genome)   1 1
No Yes Single-cell genome from subgingival tooth surface TM7b (meta-genome)   1 1
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   5 4
No Yes Sludge/US, Jazz Assembly (meta-genome)   3 3
No Yes Sludge/US, Phrap Assembly (meta-genome)   7 7
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   38 30
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   36 32
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   54 50
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   17 16
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   25 25
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   23 23
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   34 31
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   6 5
No Yes STRING v9.0.5 (STRING)   2363 1485
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   3 3
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   116 101
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   2 2
No Yes Termite Protist Endosymbiont Community (meta-genome)   5 5
No Yes Uniprot 2018_03 genome   45245 29719
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   5 3
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   6 6
No Yes Global Ocean Sampling Expedition (GOS)   186 140
No Yes NCBI plasmid sequences (Plasmids)   268 155
No Yes NCBI viral sequences (Viral)   176 127
No Yes PDB chains (SCOP 1.75) (PDB)   13 8
No Yes Protein Data Bank (all PDB sequenc)   78 45
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   192 183
No Yes TargetDB (Targets)   161 97
No Yes The Salmonella enterica Pan-genome (meta-genome)   161 117
No Yes UniProt viral sequences (Viral)   96 70

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