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Phage fibre proteins superfamily domain assignments
in
Vibrio fischeri ES114

Assignment details

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Vibrio fischeri ES114 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|59711836|ref|YP_204612.1|   1.8e-45   438-620   Tail-associated lysozyme gp5, C-terminal domain  
gi|59714136|ref|YP_206911.1|   7.77e-51   445-627   Lactophage receptor-binding protein domain  
 
Weak hits:
gi|59712632|ref|YP_205408.1|   0.0282   94-142   Lactophage receptor-binding protein domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   118574 118574
No Yes Rattus norvegicus 76_5.0 Norway rat 2 2
No Yes Mus musculus 76_38 House mouse 7 6
No Yes Ochotona princeps 76 American pika 1 1
No Yes Mustela putorius furo 76_1.0 Domestic ferret 1 1
No Yes Saccoglossus kowalevskii v3.0   39 24
No Yes Petromyzon marinus 76_7.0 Sea lamprey 11 4
No Yes Anas platyrhynchos 76_1.0 Mallard 1 1
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 3 1
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 3 2
No Yes Octopus bimaculoides 280   5 5
No Yes Lottia gigantea Owl limpet 15 13
No Yes Capitella sp. I   4 3
No Yes Lucilia cuprina Australian sheep blowfly 3 3
No Yes Drosophila virilis 1.2   1 1
No Yes Megaselia scalaris 22   1 1
No Yes Tribolium castaneum 3.0 Red flour beetle 1 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 2 1
No Yes Acyrthosiphon pisum Pea aphid 1 1
No Yes Strigamia maritima 22   1 1
No Yes Onchocerca volvulus 22   1 1
No Yes Caenorhabditis japonica   1 1
No Yes Caenorhabditis briggsae 2   116 83
No Yes Mnemiopsis leidyi Sea walnut 2 2
No Yes Acropora digitifera v1.0   2 2
No Yes Nematostella vectensis 1.0 Starlet sea anemone 34 28
No Yes Hydra vulgaris   2 2
No Yes Sphaeroforma arctica JP610   4 4
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Piloderma croceum F 1598 v1.0   1 1
No Yes Daldinia eschscholzii EC12 v1.0   2 2
No Yes Pyrenophora tritici-repentis   1 1
No Yes Aspergillus nidulans FGSC A4   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes Medicago truncatula Barrel medic 3 2
No Yes Fragaria vesca Wild strawberry 1 1
No Yes Malus domestica v196 Apple 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Aquilegia coerulea v195   1 1
No Yes Triticum aestivum 22 Bread wheat 1 1
No Yes Aegilops tauschii 22   1 1
No Yes Oryza meridionalis 22   1 1
No Yes Oryza nivara 22   1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 1 1
No Yes Oryza sativa v193 Rice 1 1
No Yes Physcomitrella patens   2 2
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   3 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 7 4
No Yes Phytophthora capsici   1 1
No Yes Fragilariopsis cylindrus   8 5
No Yes Perkinsus marinus ATCC 50983   3 1
No Yes Neospora caninum   1 1
No Yes Toxoplasma gondii ME49   1 1
No Yes Plasmodium falciparum 3D7   15 13
No Yes Plasmodium vivax SaI-1 7.0   1 1
No Yes Plasmodium knowlesi strain H   4 2
No Yes Plasmodium berghei ANKA   3 2
No Yes Trichomonas vaginalis   42 40
No Yes Guillardia theta CCMP2712 v1.0   2 2
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Leptolyngbya sp. PCC 7376   1 1
No Yes Synechococcus sp. CC9311   1 1
No Yes Rivularia sp. PCC 7116   1 1
No Yes Calothrix sp. PCC 7507   1 1
No Yes Nostoc sp. PCC 7107   1 1
No Yes Nostoc punctiforme PCC 73102   1 1
No Yes Nostoc sp. PCC 7524   1 1
No Yes Ureaplasma urealyticum serovar 10 str. ATCC 33699   2 1
No Yes Frankia sp. EAN1pec   1 1
No Yes Kitasatospora setae KM-6054   1 1
No Yes Streptomyces coelicolor A3(2)   1 1
No Yes Streptomyces flavogriseus ATCC 33331   1 1
No Yes Microlunatus phosphovorus NM-1   2 2
No Yes Actinoplanes sp. SE50/110   1 1
No Yes Mycobacterium sp. JLS   1 1
No Yes Xylanimonas cellulosilytica DSM 15894   2 2
No Yes Herpetosiphon aurantiacus DSM 785   1 1
No Yes Roseiflexus sp. RS-1   1 1
No Yes Roseiflexus castenholzii DSM 13941   1 1
No Yes Anaerococcus prevotii DSM 20548   1 1
No Yes Megasphaera elsdenii DSM 20460   2 1
No Yes Acidaminococcus fermentans DSM 20731   2 1
No Yes Clostridium cellulolyticum H10   1 1
No Yes Ethanoligenens harbinense YUAN-3   2 2
No Yes Faecalibacterium prausnitzii   1 1
No Yes Oscillibacter valericigenes Sjm18-20   1 1
No Yes butyrate-producing bacterium SS3/4   1 1
No Yes Clostridium sp. BNL1100   1 1
No Yes Clostridium acetobutylicum ATCC 824   1 1
No Yes Lactococcus lactis subsp. cremoris MG1363   1 1
No Yes Streptococcus equi subsp. equi 4047   4 4
No Yes Streptococcus dysgalactiae subsp. equisimilis GGS_124   1 1
No Yes Streptococcus pyogenes str. Manfredo   4 4
No Yes Brevibacillus brevis NBRC 100599   1 1
No Yes Gemmatimonas aurantiaca T-27   2 2
No Yes Niastella koreensis GR20-10   1 1
No Yes Chitinophaga pinensis DSM 2588   4 4
No Yes Candidatus Cardinium hertigii   1 1
No Yes Fibrella aestuarina   1 1
No Yes Cytophaga hutchinsonii ATCC 33406   1 1
No Yes Runella slithyformis DSM 19594   1 1
No Yes Prevotella intermedia 17   4 4
No Yes Alistipes finegoldii DSM 17242   4 4
No Yes Bacteroides salanitronis DSM 18170   1 1
No Yes Bacteroides fragilis YCH46   2 2
No Yes Solitalea canadensis DSM 3403   1 1
No Yes Sphingobacterium sp. 21   1 1
No Yes Owenweeksia hongkongensis DSM 17368   1 1
No Yes Lacinutrix sp. 5H-3-7-4   2 2
No Yes Zobellia galactanivorans   2 2
No Yes Cellulophaga algicola DSM 14237   2 2
No Yes Ornithobacterium rhinotracheale DSM 15997   1 1
No Yes Flavobacterium branchiophilum FL-15   3 3
No Yes Flavobacterium columnare ATCC 49512   6 6
No Yes Flavobacterium johnsoniae UW101   5 5
No Yes Planctomyces brasiliensis DSM 5305   1 1
No Yes Rhodopirellula baltica SH 1   1 1
No Yes Pirellula staleyi DSM 6068   1 1
No Yes Treponema succinifaciens DSM 2489   2 2
No Yes Candidatus Solibacter usitatus Ellin6076   1 1
No Yes Granulicella tundricola MP5ACTX9   1 1
No Yes Granulicella mallensis MP5ACTX8   7 6
No Yes Terriglobus saanensis SP1PR4   1 1
No Yes Candidatus Nitrospira defluvii   2 1
No Yes Arcobacter sp. L   2 2
No Yes Arcobacter nitrofigilis DSM 7299   2 2
No Yes Campylobacter concisus 13826   1 1
No Yes Helicobacter hepaticus ATCC 51449   3 3
No Yes Helicobacter cinaedi PAGU611   2 2
No Yes Nitratiruptor sp. SB155-2   1 1
No Yes Desulfobulbus propionicus DSM 2032   1 1
No Yes Desulfovibrio aespoeensis Aspo-2   1 1
No Yes Desulfovibrio vulgaris subsp. vulgaris DP4   2 2
No Yes Desulfovibrio salexigens DSM 2638   1 1
No Yes Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774   1 1
No Yes Desulfovibrio africanus str. Walvis Bay   1 1
No Yes Geobacter sp. M21   1 1
No Yes Geobacter bemidjiensis Bem   1 1
No Yes Geobacter sulfurreducens KN400   2 2
No Yes Geobacter metallireducens GS-15   2 2
No Yes Pelobacter carbinolicus DSM 2380   2 2
No Yes Haliangium ochraceum DSM 14365   3 3
No Yes Sorangium cellulosum 'So ce 56'   32 25
No Yes Corallococcus coralloides DSM 2259   3 3
No Yes Myxococcus xanthus DK 1622   5 3
No Yes Myxococcus fulvus HW-1   5 3
No Yes Dechloromonas aromatica RCB   2 1
No Yes Azoarcus sp. KH32C   1 1
No Yes Azoarcus sp. BH72   3 3
No Yes Dechlorosoma suillum PS   1 1
No Yes Pseudogulbenkiania sp. NH8B   3 3
No Yes Chromobacterium violaceum ATCC 12472   11 6
No Yes Rubrivivax gelatinosus IL144   1 1
No Yes Leptothrix cholodnii SP-6   2 1
No Yes Burkholderia phytofirmans PsJN   4 4
No Yes Burkholderia phymatum STM815   8 8
No Yes Burkholderia xenovorans LB400   4 4
No Yes Ralstonia eutropha JMP134   1 1
No Yes Cupriavidus taiwanensis LMG 19424   1 1
No Yes Ralstonia eutropha H16   7 7
No Yes Ralstonia pickettii 12D   3 3
No Yes Ralstonia solanacearum CFBP2957   3 3
No Yes Burkholderia sp. RPE64   1 1
No Yes Burkholderia sp. CCGE1002   3 3
No Yes Burkholderia thailandensis E264   9 8
No Yes Burkholderia pseudomallei 1106a   10 8
No Yes Burkholderia mallei SAVP1   7 6
No Yes Burkholderia ambifaria AMMD   5 5
No Yes Burkholderia cenocepacia HI2424   6 6
No Yes Burkholderia multivorans ATCC 17616   3 3
No Yes Burkholderia vietnamiensis G4   2 2
No Yes Burkholderia gladioli BSR3   8 8
No Yes Burkholderia glumae BGR1   5 5
No Yes Delftia sp. Cs1-4   6 3
No Yes Delftia acidovorans SPH-1   8 4
No Yes Variovorax paradoxus S110   10 9
No Yes Acidovorax citrulli AAC00-1   20 13
No Yes Acidovorax avenae subsp. avenae ATCC 19860   12 8
No Yes Collimonas fungivorans Ter331   7 6
No Yes Herbaspirillum seropedicae SmR1   5 5
No Yes Pusillimonas sp. T7-7   2 1
No Yes Advenella kashmirensis WT001   5 5
No Yes Taylorella asinigenitalis MCE3   5 5
No Yes Taylorella equigenitalis MCE9   6 5
No Yes Bordetella petrii DSM 12804   3 2
No Yes Bordetella avium 197N   1 1
No Yes Bordetella bronchiseptica RB50   2 1
No Yes Achromobacter xylosoxidans A8   1 1
No Yes Achromobacter xylosoxidans   1 1
No Yes Nitrosomonas sp. Is79A3   1 1
No Yes Methylovorus sp. MP688   2 2
No Yes Methylovorus glucosetrophus SIP3-4   2 2
No Yes Erythrobacter litoralis HTCC2594   1 1
No Yes Novosphingobium aromaticivorans DSM 12444   1 1
No Yes Dinoroseobacter shibae DFL 12   2 2
No Yes Pseudovibrio sp. FO-BEG1   4 3
No Yes Jannaschia sp. CCS1   1 1
No Yes Rhodobacter sphaeroides ATCC 17029   2 1
No Yes Paracoccus denitrificans PD1222   2 1
No Yes Tistrella mobilis KA081020-065   2 2
No Yes Magnetospirillum magneticum AMB-1   1 1
No Yes Azospirillum lipoferum 4B   2 2
No Yes Azospirillum sp. B510   3 3
No Yes Azospirillum brasilense Sp245   1 1
No Yes Acidiphilium multivorum AIU301   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Azorhizobium caulinodans ORS 571   1 1
No Yes Methylobacterium nodulans ORS 2060   1 1
No Yes Methylobacterium radiotolerans JCM 2831   2 1
No Yes Rhizobium etli CIAT 652   3 2
No Yes Rhizobium leguminosarum bv. viciae 3841   1 1
No Yes Agrobacterium tumefaciens str. C58   3 2
No Yes Agrobacterium sp. H13-3   1 1
No Yes Agrobacterium vitis S4   8 6
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   2 1
No Yes Mesorhizobium loti MAFF303099   2 1
No Yes Methylocella silvestris BL2   1 1
No Yes Bradyrhizobium japonicum USDA 110   1 1
No Yes Bartonella grahamii as4aup   2 2
No Yes Saccharophagus degradans 2-40   1 1
No Yes Teredinibacter turnerae T7901   2 2
No Yes Cellvibrio japonicus Ueda107   1 1
No Yes Aggregatibacter aphrophilus NJ8700   3 3
No Yes Aggregatibacter actinomycetemcomitans D7S-1   7 7
No Yes Gallibacterium anatis UMN179   1 1
No Yes Oceanimonas sp. GK1   1 1
No Yes Tolumonas auensis DSM 9187   3 3
No Yes Aeromonas salmonicida subsp. salmonicida A449   1 1
No Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966   3 3
No Yes Aliivibrio salmonicida LFI1238   3 3
No Yes Vibrio fischeri MJ11   4 4
No Yes Vibrio sp. Ex25   2 2
No Yes Vibrio harveyi ATCC BAA-1116   3 3
No Yes Vibrio parahaemolyticus RIMD 2210633   2 2
No Yes Vibrio splendidus LGP32   2 2
No Yes Vibrio anguillarum 775   4 4
No Yes Vibrio furnissii NCTC 11218   5 5
No Yes Vibrio vulnificus MO6-24/O   1 1
No Yes Vibrio cholerae O395   3 3
No Yes Photobacterium profundum SS9   1 1
No Yes Psychromonas sp. CNPT3   1 1
No Yes Shewanella denitrificans OS217   1 1
No Yes Shewanella woodyi ATCC 51908   1 1
No Yes Shewanella frigidimarina NCIMB 400   1 1
No Yes Pseudoalteromonas sp. SM9913   1 1
No Yes Pseudoalteromonas atlantica T6c   1 1
No Yes Marinobacter adhaerens HP15   2 2
No Yes Marinobacter sp. BSs20148   1 1
No Yes Marinobacter hydrocarbonoclasticus ATCC 49840   3 3
No Yes Marinobacter aquaeolei VT8   5 5
No Yes Hahella chejuensis KCTC 2396   6 6
No Yes Marinomonas posidonica IVIA-Po-181   4 4
No Yes Marinomonas sp. MWYL1   5 5
No Yes Marinomonas mediterranea MMB-1   2 2
No Yes Chromohalobacter salexigens DSM 3043   3 3
No Yes Halomonas elongata DSM 2581   3 3
No Yes Methylomicrobium alcaliphilum   3 2
No Yes Methylomonas methanica MC09   2 2
No Yes Frateuria aurantia DSM 6220   2 1
No Yes Xylella fastidiosa M23   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   1 1
No Yes Xanthomonas oryzae pv. oryzae PXO99A   7 7
No Yes Xanthomonas campestris pv. campestris str. B100   9 1
No Yes Alkalilimnicola ehrlichii MLHE-1   5 5
No Yes Thiocystis violascens DSM 198   2 2
No Yes Photorhabdus asymbiotica   12 12
No Yes Photorhabdus luminescens subsp. laumondii TTO1   10 10
No Yes Xenorhabdus bovienii SS-2004   11 11
No Yes Xenorhabdus nematophila ATCC 19061   5 5
No Yes Providencia stuartii MRSN 2154   6 6
No Yes Proteus mirabilis HI4320   5 5
No Yes Edwardsiella ictaluri 93-146   2 2
No Yes Edwardsiella tarda EIB202   1 1
No Yes Rahnella sp. Y9602   2 2
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Yersinia pseudotuberculosis IP 31758   5 5
No Yes Yersinia pestis Pestoides F   4 4
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   2 2
No Yes Serratia proteamaculans 568   3 2
No Yes Dickeya zeae Ech1591   6 6
No Yes Pectobacterium wasabiae WPP163   11 10
No Yes Pectobacterium sp. SCC3193   14 13
No Yes Pectobacterium atrosepticum SCRI1043   5 5
No Yes Pectobacterium carotovorum subsp. carotovorum PC1   3 3
No Yes Pantoea sp. At-9b   1 1
No Yes Pantoea vagans C9-1   1 1
No Yes Pantoea ananatis LMG 20103   8 2
No Yes Erwinia tasmaniensis Et1/99   3 2
No Yes Erwinia sp. Ejp617   2 2
No Yes Erwinia billingiae Eb661   1 1
No Yes Erwinia pyrifoliae Ep1/96   2 2
No Yes Erwinia amylovora ATCC 49946   2 2
No Yes Cronobacter turicensis z3032   5 4
No Yes Cronobacter sakazakii ES15   6 5
No Yes Enterobacteriaceae bacterium strain FGI 57   6 3
No Yes Shigella sonnei Ss046   3 3
No Yes Shigella flexneri 5 str. 8401   1 1
No Yes Salmonella bongori NCTC 12419   3 3
No Yes Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594   2 2
No Yes Klebsiella oxytoca E718   2 2
No Yes Klebsiella pneumoniae NTUH-K2044   2 2
No Yes Enterobacter aerogenes KCTC 2190   3 2
No Yes Escherichia fergusonii ATCC 35469   1 1
No Yes Enterobacter sp. R4-368   7 5
No Yes Enterobacter asburiae LF7a   3 3
No Yes Enterobacter cloacae subsp. dissolvens SDM   2 2
No Yes Citrobacter rodentium ICC168   3 3
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Azotobacter vinelandii DJ   2 2
No Yes Pseudomonas sp. TKP   3 3
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   5 4
No Yes Pseudomonas entomophila L48   10 10
No Yes Pseudomonas syringae pv. tomato str. DC3000   6 6
No Yes Pseudomonas fulva 12-X   3 2
No Yes Pseudomonas putida F1   5 5
No Yes Pseudomonas protegens Pf-5   4 3
No Yes Pseudomonas fluorescens SBW25   3 3
No Yes Pseudomonas mendocina ymp   5 4
No Yes Pseudomonas aeruginosa UCBPP-PA14   12 11
No Yes Pseudomonas sp. VLB120   5 5
No Yes Moraxella catarrhalis RH4   2 2
No Yes halophilic archaeon DL31   1 1
No Yes Methanocella arvoryzae MRE50   1 1
No Yes Methanosarcina acetivorans C2A   1 1
No Yes Salinarchaeum sp. Harcht-Bsk1   2 1
No Yes Natrinema sp. J7-2   1 1
No Yes Natrialba magadii ATCC 43099   1 1
No Yes Halogeometricum borinquense DSM 11551   1 1
No Yes Halomicrobium mukohataei DSM 12286   1 1
No Yes Halorhabdus utahensis DSM 12940   1 1
No Yes Halobacterium salinarum R1   2 1
No Yes Halobacterium sp. NRC-1   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 2 2
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 2 2
No Yes Neospora caninum Nc-Liverpool 6.2   1 1
No Yes Plasmodium falciparum HB3   12 12
No Yes Plasmodium falciparum Dd2   12 12
No Yes Arthrospira platensis NIES-39   1 1
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   1 1
No Yes Calothrix parietina Calothrix sp. PCC 6303   1 1
No Yes Cylindrospermum stagnale PCC 7417   1 1
No Yes Anabaena cylindrica PCC 7122   1 1
No Yes Frankia sp. EuI1c   1 1
No Yes Streptomyces albus J1074   1 1
No Yes Streptomyces davawensis JCM 4913   1 1
No Yes Streptomyces venezuelae ATCC 10712   1 1
No Yes Saccharothrix espanaensis DSM 44229   1 1
No Yes Propionibacterium acidipropionici ATCC 4875   1 1
No Yes Deinococcus peraridilitoris DSM 19664   1 1
No Yes Faecalibacterium prausnitzii L2-6   1 1
No Yes Clostridium acetobutylicum DSM 1731   1 1
No Yes Clostridium acetobutylicum EA 2018   1 1
No Yes Enterococcus faecium Aus0085   1 1
No Yes Lactococcus lactis subsp. cremoris NZ9000   1 1
No Yes Lactococcus lactis subsp. cremoris SK11   1 1
No Yes Streptococcus dysgalactiae subsp. equisimilis 167   1 1
No Yes Streptococcus pyogenes HSC5   3 3
No Yes Streptococcus pyogenes A20   1 1
No Yes Streptococcus pyogenes MGAS1882   1 1
No Yes Streptococcus pyogenes Alab49   3 3
No Yes Streptococcus pyogenes MGAS10750   2 2
No Yes Streptococcus pyogenes MGAS10270   2 2
No Yes Streptococcus pyogenes MGAS2096   2 2
No Yes Streptococcus pyogenes MGAS9429   3 3
No Yes Streptococcus pyogenes MGAS6180   2 2
No Yes Streptococcus pyogenes NZ131   2 2
No Yes Streptococcus pyogenes MGAS8232   5 5
No Yes Streptococcus pyogenes MGAS10394   5 5
No Yes Streptococcus pyogenes MGAS315   6 6
No Yes Streptococcus pyogenes SSI-1   5 5
No Yes Streptococcus pyogenes MGAS5005   1 1
No Yes Streptococcus pyogenes M1 GAS   3 3
No Yes Streptococcus agalactiae ILRI005   1 1
No Yes Bacteroides fragilis 638R   1 1
No Yes Bacteroides fragilis NCTC 9343   1 1
No Yes Singulisphaera acidiphila DSM 18658   1 1
No Yes Campylobacter jejuni RM1221   1 1
No Yes Desulfocapsa sulfexigens DSM 10523   2 1
No Yes Desulfovibrio hydrothermalis AM13 = DSM 14728   2 2
No Yes Geobacter sp. M18   1 1
No Yes Geobacter sulfurreducens PCA   2 2
No Yes Sorangium cellulosum So0157-2   35 26
No Yes Myxococcus stipitatus DSM 14675   14 11
No Yes Burkholderia phenoliruptrix BR3459a   1 1
No Yes Ralstonia pickettii 12J   1 1
No Yes Ralstonia solanacearum FQY_4   6 6
No Yes Ralstonia solanacearum Po82   3 3
No Yes Ralstonia solanacearum PSI07   3 3
No Yes Ralstonia solanacearum CMR15   1 1
No Yes Ralstonia solanacearum GMI1000   4 4
No Yes Burkholderia sp. YI23   7 6
No Yes Burkholderia sp. CCGE1003   2 2
No Yes Burkholderia sp. CCGE1001   4 4
No Yes Burkholderia sp. KJ006   3 3
No Yes Burkholderia thailandensis MSMB121   10 9
No Yes Burkholderia pseudomallei MSHR305   9 8
No Yes Burkholderia pseudomallei NCTC 13179   9 8
No Yes Burkholderia pseudomallei BPC006   10 8
No Yes Burkholderia pseudomallei 1026b   8 7
No Yes Burkholderia pseudomallei 668   8 7
No Yes Burkholderia pseudomallei 1710b   10 8
No Yes Burkholderia pseudomallei K96243   10 8
No Yes Burkholderia mallei NCTC 10229   7 6
No Yes Burkholderia mallei NCTC 10247   7 6
No Yes Burkholderia mallei ATCC 23344   7 6
No Yes Burkholderia lata   9 9
No Yes Burkholderia ambifaria MC40-6   5 5
No Yes Burkholderia cenocepacia MC0-3   4 4
No Yes Burkholderia cenocepacia AU 1054   6 6
No Yes Burkholderia cenocepacia J2315   6 6
No Yes Burkholderia multivorans ATCC 17616   3 3
No Yes Burkholderia cepacia GG4   2 1
No Yes Variovorax paradoxus B4   12 9
No Yes Variovorax paradoxus EPS   13 12
No Yes Taylorella asinigenitalis 14/45   9 7
No Yes Taylorella equigenitalis 14/56   5 4
No Yes Taylorella equigenitalis ATCC 35865   6 5
No Yes Bordetella parapertussis Bpp5   2 1
No Yes Bordetella bronchiseptica MO149   2 1
No Yes Bordetella bronchiseptica 253   2 1
No Yes Leisingera methylohalidivorans DSM 14336   1 1
No Yes Rhodobacter sphaeroides KD131   2 1
No Yes Rhodobacter sphaeroides 2.4.1   2 1
No Yes Paracoccus aminophilus JCM 7686   4 3
No Yes Sinorhizobium fredii USDA 257   2 1
No Yes Rhizobium etli bv. mimosae str. Mim1   1 1
No Yes Bradyrhizobium japonicum USDA 6   1 1
No Yes Bartonella australis Aust/NH1   1 1
No Yes Simiduia agarivorans SA1 = DSM 21679   1 1
No Yes Aggregatibacter actinomycetemcomitans ANH9381   1 1
No Yes Mannheimia haemolytica D171   2 2
No Yes Haemophilus influenzae F3031   1 1
No Yes Haemophilus influenzae R2866   1 1
No Yes Aeromonas hydrophila ML09-119   2 2
No Yes Vibrio fischeri ES114   2 2
No Yes Vibrio parahaemolyticus BB22OP   3 3
No Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749   2 2
No Yes Vibrio anguillarum Listonella anguillarum M3   4 4
No Yes Vibrio nigripulchritudo VibrioScope   2 2
No Yes Vibrio vulnificus CMCP6   2 2
No Yes Vibrio vulnificus YJ016   1 1
No Yes Vibrio cholerae LMA3984-4   2 2
No Yes Vibrio cholerae M66-2   3 3
No Yes Vibrio cholerae O395   3 3
No Yes Vibrio cholerae IEC224   3 3
No Yes Vibrio cholerae O1 str. 2010EL-1786   3 3
No Yes Vibrio cholerae MJ-1236   3 3
No Yes Vibrio cholerae O1 biovar El Tor str. N16961   3 3
No Yes Shewanella baltica BA175   1 1
No Yes Shewanella baltica OS117   1 1
No Yes Alteromonas macleodii str. 'Balearic Sea AD45'   1 1
No Yes Alcanivorax dieselolei B5   2 1
No Yes Thalassolituus oleivorans MIL-1   1 1
No Yes Xylella fastidiosa subsp. fastidiosa GB514   1 1
No Yes Xylella fastidiosa Temecula1   1 1
No Yes Xylella fastidiosa 9a5c   3 3
No Yes Xanthomonas citri subsp. citri Aw12879   1 1
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   2 2
No Yes Xanthomonas axonopodis pv. citrumelo F1   2 2
No Yes Xanthomonas axonopodis Xac29-1   1 1
No Yes Xanthomonas oryzae pv. oryzicola BLS256   6 6
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   5 5
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   6 6
No Yes Xanthomonas campestris pv. raphani 756C   10 1
No Yes Xanthomonas campestris pv. campestris str. 8004   9 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   9 1
No Yes Proteus mirabilis BB2000   2 2
No Yes Edwardsiella tarda C07-087   2 2
No Yes Edwardsiella tarda FL6-60   1 1
No Yes Rahnella aquatilis HX2   1 1
No Yes Yersinia pseudotuberculosis PB1/+   6 6
No Yes Yersinia pseudotuberculosis YPIII   6 6
No Yes Yersinia pseudotuberculosis IP 32953   6 6
No Yes Yersinia pestis biovar Microtus str. 91001   5 5
No Yes Yersinia pestis A1122   5 5
No Yes Yersinia pestis Z176003   5 5
No Yes Yersinia pestis D182038   5 5
No Yes Yersinia pestis D106004   5 5
No Yes Yersinia pestis biovar Medievalis str. Harbin 35   5 5
No Yes Yersinia pestis Nepal516   5 5
No Yes Yersinia pestis Antiqua   5 5
No Yes Yersinia pestis Angola   2 2
No Yes Yersinia pestis CO92   5 5
No Yes Yersinia pestis KIM10+   5 5
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   1 1
No Yes Yersinia enterocolitica subsp. palearctica Y11   1 1
No Yes Serratia marcescens FGI94   6 5
No Yes Serratia marcescens WW4   4 4
No Yes Dickeya dadantii Ech586   4 4
No Yes Dickeya dadantii 3937   5 5
No Yes Pectobacterium carotovorum subsp. carotovorum PCC21   3 3
No Yes Pantoea ananatis LMG 5342   13 3
No Yes Pantoea ananatis PA13   8 3
No Yes Pantoea ananatis AJ13355   11 3
No Yes Erwinia pyrifoliae DSM 12163   2 2
No Yes Erwinia amylovora CFBP1430   2 2
No Yes Cronobacter sakazakii CMCC 45402   5 4
No Yes Cronobacter sakazakii SP291   5 4
No Yes Cronobacter sakazakii ATCC BAA-894   4 3
No Yes Shigella sonnei 53G   4 4
No Yes Shigella flexneri 2002017   1 1
No Yes Shigella flexneri 2a str. 2457T   1 1
No Yes Shigella flexneri 2a str. 301   1 1
No Yes Salmonella bongori N268-08   4 4
No Yes Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   2 2
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   1 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1   2 2
No Yes Salmonella enterica subsp. enterica serovar Newport str. SL254   2 2
No Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   2 2
No Yes Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty21a   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty2   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. 24249   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. SL483   2 2
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   2 2
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601   2 2
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150   2 2
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. B182   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476   2 2
No Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078   1 1
No Yes Salmonella enterica subsp. enterica serovar Thompson str. RM6836   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91   1 1
No Yes Klebsiella oxytoca KCTC 1686   2 2
No Yes Klebsiella pneumoniae JM45   1 1
No Yes Klebsiella pneumoniae CG43   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   2 2
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   1 1
No Yes Enterobacter aerogenes EA1509E   3 2
No Yes Escherichia coli E24377A   3 3
No Yes Escherichia coli E. coli PMV-1   4 3
No Yes Escherichia coli LY180   3 3
No Yes Escherichia coli APEC O78   2 2
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli O104:H4 str. 2009EL-2050   4 4
No Yes Escherichia coli O104:H4 str. 2009EL-2071   4 4
No Yes Escherichia coli O104:H4 str. 2011C-3493   4 4
No Yes Escherichia coli P12b   1 1
No Yes Escherichia coli str. 'clone D i2'   4 3
No Yes Escherichia coli str. 'clone D i14'   4 3
No Yes Escherichia coli UM146   4 3
No Yes Escherichia coli 042   4 3
No Yes Escherichia coli Xuzhou21   3 3
No Yes Escherichia coli IHE3034   5 4
No Yes Escherichia coli UMNK88   3 3
No Yes Escherichia coli O83:H1 str. NRG 857C   5 4
No Yes Escherichia coli ABU 83972   4 3
No Yes Escherichia coli KO11FL   3 3
No Yes Escherichia coli KO11FL   3 3
No Yes Escherichia coli LF82   7 5
No Yes Escherichia coli ED1a   4 2
No Yes Escherichia coli IAI39   1 1
No Yes Escherichia coli UMN026   4 3
No Yes Escherichia coli 55989   4 4
No Yes Escherichia coli S88   4 3
No Yes Escherichia coli IAI1   2 2
No Yes Escherichia coli W   3 3
No Yes Escherichia coli W   3 3
No Yes Escherichia coli ATCC 8739   2 2
No Yes Escherichia coli SE11   3 3
No Yes Escherichia coli APEC O1   5 4
No Yes Escherichia coli O103:H2 str. 12009   3 3
No Yes Escherichia coli UTI89   4 3
No Yes Escherichia coli 536   3 2
No Yes Escherichia coli HS   2 2
No Yes Escherichia coli ETEC H10407   2 2
No Yes Escherichia coli O55:H7 str. RM12579   3 3
No Yes Escherichia coli O55:H7 str. CB9615   3 3
No Yes Escherichia coli O26:H11 str. 11368   2 2
No Yes Escherichia coli CFT073   4 3
No Yes Escherichia coli O111:H- str. 11128   3 3
No Yes Escherichia coli O157:H7 str. TW14359   3 3
No Yes Escherichia coli O157:H7 str. EC4115   3 3
No Yes Escherichia coli O157:H7 str. Sakai   3 3
No Yes Escherichia coli O157:H7 str. EDL933   3 3
No Yes Escherichia coli B str. REL606   2 2
No Yes Enterobacter cloacae EcWSU1   2 2
No Yes Enterobacter cloacae subsp. cloacae ENHKU01   1 1
No Yes Enterobacter cloacae subsp. cloacae NCTC 9394   1 1
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   3 3
No Yes Azotobacter vinelandii CA6   2 2
No Yes Azotobacter vinelandii CA   2 2
No Yes Pseudomonas denitrificans ATCC 13867   5 5
No Yes Pseudomonas syringae pv. phaseolicola 1448A   2 2
No Yes Pseudomonas syringae pv. syringae B728a   12 4
No Yes Pseudomonas stutzeri CCUG 29243   3 3
No Yes Pseudomonas stutzeri DSM 10701   4 4
No Yes Pseudomonas stutzeri DSM 4166   1 1
No Yes Pseudomonas stutzeri RCH2   3 3
No Yes Pseudomonas stutzeri ATCC 17588 = LMG 11199   3 3
No Yes Pseudomonas monteilii SB3101   3 3
No Yes Pseudomonas monteilii SB3078   3 3
No Yes Pseudomonas putida H8234   2 2
No Yes Pseudomonas putida HB3267   4 4
No Yes Pseudomonas putida NBRC 14164   3 3
No Yes Pseudomonas putida DOT-T1E   5 5
No Yes Pseudomonas putida S16   4 4
No Yes Pseudomonas putida W619   3 3
No Yes Pseudomonas putida ND6   4 4
No Yes Pseudomonas putida KT2440   5 5
No Yes Pseudomonas putida GB-1   5 5
No Yes Pseudomonas protegens CHA0   3 2
No Yes Pseudomonas poae RE*1-1-14   3 3
No Yes Pseudomonas fluorescens F113   6 5
No Yes Pseudomonas fluorescens A506   3 3
No Yes Pseudomonas fluorescens R124   10 6
No Yes Pseudomonas fluorescens Pf0-1   8 8
No Yes Pseudomonas mendocina NK-01   1 1
No Yes Pseudomonas aeruginosa SCV20265   10 9
No Yes Pseudomonas aeruginosa MTB-1   11 9
No Yes Pseudomonas aeruginosa LES431   9 8
No Yes Pseudomonas aeruginosa RP73   10 9
No Yes Pseudomonas aeruginosa B136-33   11 10
No Yes Pseudomonas aeruginosa PA1R   11 10
No Yes Pseudomonas aeruginosa PA1   11 10
No Yes Pseudomonas aeruginosa DK2   10 9
No Yes Pseudomonas aeruginosa NCGM2.S1   11 10
No Yes Pseudomonas aeruginosa M18   10 9
No Yes Pseudomonas aeruginosa LESB58   10 9
No Yes Pseudomonas aeruginosa PA7   10 9
No Yes Pseudomonas aeruginosa PAO1   11 10
No Yes Acinetobacter genomosp. 13TU RUH2624   1 1
No Yes Acinetobacter baumannii ATCC 19606   2 2
No Yes Methanomethylovorans hollandica DSM 15978   2 2
No Yes Halovivax ruber XH-70   2 2
No Yes Natronobacterium gregoryi SP2   1 1
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 1 1
No Yes Lotus japonicus (Early assembly)   1 1
No Yes Malus x domestica (Duplicate) Apple 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC)   2 2
No Yes Rattus norvegicus 69_3.4 Norway rat 2 2
No Yes Mus musculus 69_38 House mouse 2 2
No Yes Ochotona princeps 69 American pika 1 1
No Yes Mustela putorius furo 69_1.0 Domestic ferret 1 1
No Yes Petromyzon marinus 69_7.0 Sea lamprey 11 4
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes 1_050719N (meta-genome)   1 1
No Yes 2_050719S (meta-genome)   1 1
No Yes 2_Base_of_chrolophyll_max (meta-genome)   1 1
No Yes 3_050719R (meta-genome)   5 5
No Yes 4_050719Q (meta-genome)   7 7
No Yes 5_050719P (meta-genome)   4 4
No Yes 6_Upper_euphotic (meta-genome)   2 2
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   10 9
No Yes Combined (meta-genome)   69 67
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   52 52
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   7 7
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   9 9
No Yes Dump bottom (Dump bottom) (meta-genome)   22 22
No Yes Dump top (Dump top) (meta-genome)   17 17
No Yes Endophytic microbiome from Rice (meta-genome)   7 7
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   6 6
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   5 5
No Yes Fungus garden combined (combined) (meta-genome)   23 22
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   44 43
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   57 54
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   3 3
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   8 8
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   2 2
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   6 6
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   8 8
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   3 3
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   15 13
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   4 3
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   4 3
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   4 4
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   3 3
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   8 8
No Yes NCBI 2017_08 genome   93148 84909
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   15 15
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   46 38
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   19 17
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   9 9
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   8 8
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   3 2
No Yes Sludge/US, Jazz Assembly (meta-genome)   1 1
No Yes Sludge/US, Phrap Assembly (meta-genome)   2 2
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   16 16
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   12 12
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   13 13
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   9 9
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   12 12
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   16 16
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1101 947
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   3 3
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   28 28
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   2 2
No Yes Termite Protist Endosymbiont Community (meta-genome)   7 7
No Yes Uniprot 2018_03 genome   17826 15655
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   1 1
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   3 3
No Yes Global Ocean Sampling Expedition (GOS)   850 831
No Yes NCBI plasmid sequences (Plasmids)   67 63
No Yes NCBI viral sequences (Viral)   185 182
No Yes PDB chains (SCOP 1.75) (PDB)   11 11
No Yes Protein Data Bank (all PDB sequenc)   330 330
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   442 442
No Yes TargetDB (Targets)   60 55
No Yes The Salmonella enterica Pan-genome (meta-genome)   40 40
No Yes UniProt viral sequences (Viral)   122 119

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