SUPERFAMILY 1.75 HMM library and genome assignments server

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Cullin repeat-like superfamily domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   46036 46036
No Yes Homo sapiens 76_38 Human 59 59
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 13 13
No Yes Gorilla gorilla 76_3.1 Western gorilla 13 13
No Yes Pongo abelii 76_2 Sumatran orangutan 11 11
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 14 13
No Yes Papio anubis 76 Olive baboon 14 14
No Yes Macaca mulatta 76_1 Rhesus monkey 22 22
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 24 24
No Yes Otolemur garnettii 76_3 Small-eared galago 12 12
No Yes Microcebus murinus 76_1 Gray mouse lemur 13 11
No Yes Rattus norvegicus 76_5.0 Norway rat 13 13
No Yes Mus musculus 76_38 House mouse 35 35
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 13 11
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 13 13
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 11 11
No Yes Cavia porcellus 76_3 Domestic guinea pig 11 11
No Yes Oryctolagus cuniculus 76_2 Rabbit 14 14
No Yes Ochotona princeps 76 American pika 10 10
No Yes Tupaia belangeri 76 Northern tree shrew 10 9
No Yes Sus scrofa 76_10.2 Pig 14 14
No Yes Bos taurus 76_3.1 Cattle 13 13
No Yes Ovis aries 76_3.1 Sheep 12 12
No Yes Vicugna pacos 76_1 Alpaca 7 7
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 12 10
No Yes Mustela putorius furo 76_1.0 Domestic ferret 12 12
No Yes Ailuropoda melanoleuca 76_1 Giant panda 13 13
No Yes Canis familiaris 76_3.1 Dog 13 13
No Yes Felis catus 76_6.2 Domestic cat 14 14
No Yes Equus caballus 76_2 Horse 13 13
No Yes Myotis lucifugus 76_2.0 Little brown bat 18 17
No Yes Pteropus vampyrus 76_1 Large flying fox 14 12
No Yes Sorex araneus 76_1 European shrew 8 7
No Yes Erinaceus europaeus 76 Western European hedgehog 11 8
No Yes Procavia capensis 76_1 Cape rock hyrax 13 10
No Yes Loxodonta africana 76_3 African savanna elephant 12 12
No Yes Echinops telfairi 76 Small Madagascar hedgehog 18 13
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 12 12
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 9 8
No Yes Macropus eugenii 76_1.0 Tammar wallaby 14 10
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 13 13
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 13 13
No Yes Ornithorhynchus anatinus 76_5 Platypus 13 13
No Yes Saccoglossus kowalevskii v3.0   16 16
No Yes Petromyzon marinus 76_7.0 Sea lamprey 9 9
No Yes Meleagris gallopavo 76_2 Turkey 13 13
No Yes Gallus gallus 76_4 Chicken 15 15
No Yes Anas platyrhynchos 76_1.0 Mallard 13 13
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 14 14
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 12 12
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 16 16
No Yes Anolis carolinensis 76_2.0 Green anole 14 14
No Yes Xenopus laevis African clawed frog 30 30
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 16 15
No Yes Latimeria chalumnae 76_1 Coelacanth 16 16
No Yes Lepisosteus oculatus 76 Spotted gar 15 15
No Yes Gadus morhua 76_1 Atlantic cod 15 15
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 21 21
No Yes Takifugu rubripes 76_4 Torafugu 38 38
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 19 19
No Yes Oryzias latipes 76_1 Japanese medaka 16 16
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 15 15
No Yes Poecilia formosa 76 Amazon molly 17 17
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 16 16
No Yes Astyanax mexicanus 76 Mexican tetra 14 14
No Yes Danio rerio 76_9 Zebrafish 30 30
No Yes Oikopleura dioica   11 11
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 33 33
No Yes Ciona intestinalis 76 Vase tunicate 9 9
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 14 14
No Yes Adineta vaga   46 45
No Yes Octopus bimaculoides 280   13 13
No Yes Crassostrea gigas 22 Pacific oyster 13 12
No Yes Lottia gigantea Owl limpet 9 9
No Yes Helobdella robusta   11 10
No Yes Capitella sp. I   10 10
No Yes Danaus plexippus OGS1.0 Monarch butterfly 11 10
No Yes Heliconius melpomene Postman butterfly 11 11
No Yes Bombyx mori Domestic silkworm 8 7
No Yes Nasonia vitripennis Jewel wasp 9 9
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 13 13
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 8 8
No Yes Linepithema humile v1.1 Argentine ant 10 10
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 8 8
No Yes Solenopsis invicta v.2.2.3 Red fire ant 9 9
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 9 9
No Yes Atta cephalotes v1.1   8 8
No Yes Camponotus floridanus v3.3 Florida carpenter ant 9 9
No Yes Lucilia cuprina Australian sheep blowfly 10 9
No Yes Drosophila grimshawi 1.3   9 9
No Yes Drosophila willistoni 1.3   9 9
No Yes Drosophila pseudoobscura 2.13   10 9
No Yes Drosophila persimilis 1.3   7 7
No Yes Drosophila suzukii   11 10
No Yes Drosophila yakuba 1.3   10 10
No Yes Drosophila simulans 1.3   8 8
No Yes Drosophila sechellia 1.3   12 11
No Yes Drosophila melanogaster 76_5 Fruit fly 19 19
No Yes Drosophila erecta 1.3   10 10
No Yes Drosophila ananassae 1.3   10 10
No Yes Drosophila virilis 1.2   9 9
No Yes Drosophila mojavensis 1.3   9 9
No Yes Megaselia scalaris 22   8 8
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 12 12
No Yes Culex pipiens quinquefasciatus Southern house mosquito 7 7
No Yes Anopheles darlingi 22 American malaria mosquito 10 10
No Yes Anopheles gambiae 49_3j African malaria mosquito 8 8
No Yes Tribolium castaneum 3.0 Red flour beetle 9 9
No Yes Pediculus humanus corporis (Early assembly) Human body louse 9 9
No Yes Acyrthosiphon pisum Pea aphid 11 11
No Yes Rhodnius prolixus 22   11 11
No Yes Daphnia pulex Common water flea 15 15
No Yes Strigamia maritima 22   21 17
No Yes Sarcoptes scabiei   10 9
No Yes Tetranychus urticae Two-spotted spider mite 16 16
No Yes Ixodes scapularis (Preliminary) Black-legged tick 8 8
No Yes Pristionchus pacificus   8 7
No Yes Meloidogyne incognita Southern root-knot nematode 15 15
No Yes Meloidogyne hapla   5 5
No Yes Onchocerca volvulus 22   11 11
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 17 17
No Yes Caenorhabditis japonica   8 8
No Yes Caenorhabditis brenneri   10 10
No Yes Caenorhabditis remanei   12 12
No Yes Caenorhabditis elegans 76_235 Roundworm 14 14
No Yes Caenorhabditis briggsae 2   10 10
No Yes Trichinella spiralis 22   8 8
No Yes Hymenolepis microstoma   12 12
No Yes Echinococcus multilocularis   9 9
No Yes Echinococcus granulosus   10 10
No Yes Taenia solium Pork tapeworm 10 10
No Yes Schistosoma mansoni   14 14
No Yes Mnemiopsis leidyi Sea walnut 9 8
No Yes Thelohanellus kitauei   7 7
No Yes Acropora digitifera v1.0   10 10
No Yes Nematostella vectensis 1.0 Starlet sea anemone 19 18
No Yes Hydra vulgaris   12 11
No Yes Amphimedon queenslandica   14 14
No Yes Trichoplax adhaerens   12 12
No Yes Proterospongia sp. ATCC 50818   6 6
No Yes Monosiga brevicollis   8 8
No Yes Sphaeroforma arctica JP610   11 11
No Yes Capsaspora owczarzaki ATCC 30864   9 9
No Yes Conidiobolus coronatus NRRL28638 v1.0   5 5
No Yes Mortierella verticillata NRRL 6337   8 8
No Yes Phycomyces blakesleeanus   10 10
No Yes Rhizopus oryzae RA 99-880   9 9
No Yes Mucor circinelloides   9 9
No Yes Rhizomucor miehei CAU432   11 11
No Yes Malassezia globosa CBS 7966   12 12
No Yes Sporisorium reilianum 22   5 5
No Yes Ustilago maydis   5 5
No Yes Mixia osmundae IAM 14324 v1.0   6 6
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   5 5
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   7 7
No Yes Melampsora laricis-populina   5 5
No Yes Rhodotorula graminis WP1 v1.0   5 5
No Yes Sporobolomyces roseus IAM 13481   6 6
No Yes Microbotryum violaceum 22   6 6
No Yes Wallemia sebi v1.0   6 6
No Yes Sphaerobolus stellatus v1.0   8 8
No Yes Piloderma croceum F 1598 v1.0   9 9
No Yes Serpula lacrymans var. lacrymans S7.9   9 9
No Yes Coniophora puteana   8 8
No Yes Hydnomerulius pinastri v2.0   12 12
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   7 7
No Yes Pisolithus microcarpus 441 v1.0   12 12
No Yes Pisolithus tinctorius Marx 270 v1.0   7 7
No Yes Scleroderma citrinum Foug A v1.0   11 11
No Yes Coprinopsis cinerea okayama7 130 v3   8 8
No Yes Pleurotus ostreatus Oyster mushroom 7 7
No Yes Amanita thiersii Skay4041 v1.0   7 7
No Yes Amanita muscaria Koide v1.0 Fly agaric 6 6
No Yes Galerina marginata v1.0   8 8
No Yes Hebeloma cylindrosporum h7 v2.0   9 9
No Yes Laccaria bicolor S238N-H82   16 16
No Yes Agaricus bisporus var. bisporus   6 6
No Yes Schizophyllum commune   8 8
No Yes Stereum hirsutum FP-91666 SS1 v1.0   9 9
No Yes Heterobasidion annosum   8 7
No Yes Gloeophyllum trabeumv1.0   7 7
No Yes Punctularia strigosozonata v1.0   7 7
No Yes Sebacina vermifera MAFF 305830 v1.0   8 8
No Yes Fomitiporia mediterranea v1.0   7 7
No Yes Tulasnella calospora AL13/4D v1.0   9 9
No Yes Postia placenta   14 14
No Yes Wolfiporia cocos MD-104 SS10 v1.0   8 8
No Yes Fomitopsis pinicolav1.0   9 9
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   9 9
No Yes Phanerochaete chrysosporium RP-78 2.1   8 8
No Yes Dichomitus squalens   7 7
No Yes Trametes versicolor v1.0   9 9
No Yes Tremella mesenterica Witches' butter 5 5
No Yes Daldinia eschscholzii EC12 v1.0   5 5
No Yes Apiospora montagnei NRRL 25634 v1.0   5 5
No Yes Magnaporthe poae ATCC 64411 22   6 6
No Yes Magnaporthe grisea 70-15   5 5
No Yes Podospora anserina   5 5
No Yes Sporotrichum thermophile ATCC 42464   5 5
No Yes Thielavia terrestris NRRL 8126   5 5
No Yes Chaetomium globosum CBS 148.51   5 5
No Yes Neurospora tetrasperma   5 5
No Yes Neurospora discreta FGSC 8579   5 5
No Yes Neurospora crassa OR74A   5 5
No Yes Cryphonectria parasitica Chestnut blight fungus 7 7
No Yes Verticillium albo-atrum VaMs.102   5 5
No Yes Verticillium dahliae VdLs.17   5 5
No Yes Acremonium alcalophilumv 1.0   6 6
No Yes Glomerella graminicola 22   5 5
No Yes Fusarium graminearum   7 7
No Yes Nectria haematococca mpVI   5 5
No Yes Fusarium oxysporum f. sp. lycopersici 4286   5 5
No Yes Fusarium verticillioides 7600   5 5
No Yes Trichoderma asperellum CBS 433.97 v1.0   5 5
No Yes Trichoderma atroviride   5 5
No Yes Trichoderma citrinoviride v1.0   5 5
No Yes Trichoderma reesei 1.2   5 5
No Yes Trichoderma virens Gv29-8   5 5
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   5 5
No Yes Trichoderma harzianum CBS 226.95 v1.0   5 5
No Yes Amorphotheca resinae v1.0 Creosote fungus 5 5
No Yes Botrytis cinerea B05.10   6 6
No Yes Sclerotinia sclerotiorum   5 5
No Yes Blumeria graminis 22   5 5
No Yes Didymella exigua CBS 183.55 v1.0   5 5
No Yes Leptosphaeria maculans 22   5 5
No Yes Setosphaeria turcica v1.0   5 5
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   6 6
No Yes Cochliobolus victoriae FI3 v1.0   6 6
No Yes Cochliobolus carbonum 26-R-13 v1.0   5 5
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 5 5
No Yes Alternaria brassicicola   4 4
No Yes Cochliobolus lunatus m118 v2.0   5 5
No Yes Pyrenophora teres f. teres 22   5 5
No Yes Pyrenophora tritici-repentis   5 5
No Yes Stagonospora nodorum   6 6
No Yes Mycosphaerella graminicola IPO323   5 5
No Yes Zasmidium cellare ATCC 36951 v1.0   5 5
No Yes Dothistroma septosporum   5 5
No Yes Septoria musiva v1.0   5 5
No Yes Mycosphaerella fijiensis CIRAD86   5 5
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   6 6
No Yes Paracoccidioides brasiliensis Pb18   5 5
No Yes Coccidioides posadasii RMSCC 3488   6 6
No Yes Coccidioides immitis RS   6 6
No Yes Ajellomyces dermatitidis SLH14081   5 5
No Yes Histoplasma capsulatum class NAmI strain WU24   5 5
No Yes Microsporum canis CBS 113480   5 5
No Yes Trichophyton equinum CBS 127.97   5 5
No Yes Trichophyton verrucosum HKI 0517   5 5
No Yes Arthroderma benhamiae CBS 112371   5 5
No Yes Trichophyton tonsurans CBS 112818   5 5
No Yes Trichophyton rubrum CBS 118892   5 5
No Yes Uncinocarpus reesii 1704   6 6
No Yes Aspergillus zonatus v1.0   5 5
No Yes Penicillium chrysogenum Wisconsin 54-1255   5 5
No Yes Penicillium chrysogenum v1.0   5 5
No Yes Aspergillus acidus v1.0   5 5
No Yes Aspergillus fumigatus Af293   5 5
No Yes Aspergillus brasiliensis v1.0   5 5
No Yes Aspergillus nidulans FGSC A4   5 5
No Yes Aspergillus sydowii v1.0   5 5
No Yes Aspergillus versicolor v1.0   5 5
No Yes Aspergillus glaucus   5 5
No Yes Aspergillus carbonarius ITEM 5010   5 5
No Yes Neosartorya fischeri NRRL 181   5 5
No Yes Aspergillus terreus NIH2624   5 5
No Yes Aspergillus tubingensis v1.0   5 5
No Yes Aspergillus wentii v1.0   5 5
No Yes Aspergillus oryzae RIB40   5 5
No Yes Aspergillus niger 22   5 5
No Yes Aspergillus niger ATCC 1015   2 2
No Yes Aspergillus flavus NRRL3357   5 5
No Yes Aspergillus clavatus NRRL 1   5 5
No Yes Penicillium marneffei ATCC 18224   5 5
No Yes Tuber melanosporum Mel28 22   5 5
No Yes Tuber melanosporum Vittad Perigord truffle 5 5
No Yes Hansenula polymorpha v2.0   6 6
No Yes Dekkera bruxellensis CBS 2499 v2.0   4 4
No Yes Pichia membranifaciensv1.0   4 4
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   5 5
No Yes Candida dubliniensis CD36   5 5
No Yes Candida tropicalis MYA-3404   6 6
No Yes Candida parapsilosis   6 6
No Yes Candida albicans SC5314   5 5
No Yes Lodderomyces elongisporus NRRL YB-4239   6 6
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   5 5
No Yes Pichia stipitis CBS 6054   5 5
No Yes Candida guilliermondii ATCC 6260   5 5
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   5 5
No Yes Debaromyces hansenii   4 4
No Yes Wickerhamomyces anomalus   5 5
No Yes Pichia pastoris GS115   6 6
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   4 4
No Yes Yarrowia lipolytica CLIB122   6 6
No Yes Candida lusitaniae ATCC 42720   5 5
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   5 5
No Yes Vanderwaltozyma polyspora DSM 70294   5 5
No Yes Candida glabrata CBS138   5 5
No Yes Kluyveromyces thermotolerans CBS 6340   4 4
No Yes Lachancea kluyveri   6 6
No Yes Kluyveromyces waltii   4 4
No Yes Ashbya gossypii ATCC 10895   4 4
No Yes Zygosaccharomyces rouxii   4 4
No Yes Saccharomyces mikatae MIT   4 4
No Yes Saccharomyces paradoxus MIT   4 4
No Yes Saccharomyces cerevisiae 76 Baker's yeast 4 4
No Yes Saccharomyces bayanus MIT   4 4
No Yes Kluyveromyces lactis   5 5
No Yes Schizosaccharomyces cryophilus OY26 22   6 6
No Yes Schizosaccharomyces octosporus yFS286   7 7
No Yes Schizosaccharomyces japonicus yFS275   6 6
No Yes Schizosaccharomyces pombe Fission yeast 6 6
No Yes Catenaria anguillulae PL171 v1.0   7 7
No Yes Allomyces macrogynus ATCC 38327   13 13
No Yes Spizellomyces punctatus DAOM BR117   8 8
No Yes Dictyostelium discoideum   11 11
No Yes Dictyostelium purpureum   11 11
No Yes Entamoeba dispar 1.2   9 9
No Yes Entamoeba invadens 1.2   10 10
No Yes Entamoeba histolytica 1   9 9
No Yes Selaginella moellendorffii   23 23
No Yes Pinus taeda Loblolly pine 136 121
No Yes Picea abies Norway spruce 32 28
No Yes Eucalyptus grandis v201 Rose gum 58 58
No Yes Theobroma cacao B97-61/B2 v1 Cacao 32 32
No Yes Gossypium raimondii v221   105 105
No Yes Citrus clementina v165   43 43
No Yes Citrus sinensis v154 Sweet orange 64 64
No Yes Thellungiella halophila v173   43 43
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 60 60
No Yes Capsella rubella v183   42 42
No Yes Arabidopsis lyrata Lyrate rockcress 50 49
No Yes Arabidopsis thaliana 10 Thale cress 50 50
No Yes Carica papaya Papaya 24 24
No Yes Medicago truncatula Barrel medic 90 87
No Yes Phaseolus vulgaris v186 French bean 41 41
No Yes Glycine max v109 Soybean 84 83
No Yes Cucumis sativus v122 Cucumber 33 33
No Yes Fragaria vesca Wild strawberry 40 39
No Yes Malus domestica v196 Apple 84 82
No Yes Prunus persica v139 Peach 35 34
No Yes Linum usitatissimum v200 Flax 63 63
No Yes Manihot esculenta v147 Cassava 50 50
No Yes Populus trichocarpa v156 Black cottonwood 68 63
No Yes Vitis vinifera Wine grape 27 26
No Yes Mimulus guttatus v140 Spotted monkey flower 45 43
No Yes Solanum lycopersicum v.2.3 Tomato 48 48
No Yes Solanum tuberosum Potato 50 50
No Yes Actinidia chinensis Hongyang   65 64
No Yes Aquilegia coerulea v195   49 49
No Yes Triticum urartu 22   59 56
No Yes Triticum aestivum 22 Bread wheat 110 109
No Yes Aegilops tauschii 22   53 51
No Yes Brachypodium distachyon Stiff brome 43 43
No Yes Oryza barthii 22 African wild rice 73 73
No Yes Oryza meridionalis 22   71 68
No Yes Oryza glumaepatula 22   83 79
No Yes Oryza glaberrima African rice 55 55
No Yes Oryza punctata 22   60 56
No Yes Oryza nivara 22   85 84
No Yes Oryza brachyantha 22 Malo sina 43 43
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 93 93
No Yes Oryza sativa v193 Rice 93 93
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 72 68
No Yes Panicum virgatum v202 Switchgrass 118 118
No Yes Setaria italica v164 Foxtail millet 59 59
No Yes Zea mays subsp. mays Maize 69 69
No Yes Zea mays v181 Maize 87 87
No Yes Sorghum bicolor Sorghum 56 56
No Yes Musa balbisiana Balbis banana 49 48
No Yes Musa acuminata 22 Wild Malaysian banana 49 47
No Yes Amborella trichopoda 22   23 23
No Yes Physcomitrella patens   32 32
No Yes Coccomyxa subellipsoidea sp. C-169 v2   7 7
No Yes Asterochloris sp. Cgr/DA1pho v1.0   6 6
No Yes Chlorella variabilis sp. NC64A   4 4
No Yes Chlorella vulgaris   6 6
No Yes Volvox carteri f. nagariensis   5 5
No Yes Volvox carteri v199   5 5
No Yes Chlamydomonas reinhardtii 4.0   6 6
No Yes Ostreococcus sp. RCC809   4 4
No Yes Ostreococcus lucimarinus CCE9901   4 4
No Yes Ostreococcus tauri   4 4
No Yes Bathycoccus prasinos   5 4
No Yes Micromonas sp. RCC299   5 5
No Yes Micromonas pusilla CCMP1545 v3.0   5 5
No Yes Cyanidioschyzon merolae strain 10D 22   4 4
No Yes Cyanidioschyzon merolae   4 4
No Yes Porphyridium purpureum 02_2012   6 6
No Yes Thecamonas trahens ATCC 50062   7 7
No Yes Bigelowiella natans CCMP2755 22   13 13
No Yes Giardia lamblia 2.3   1 1
No Yes Cyanophora paradoxa   8 8
No Yes Leishmania mexicana 2.4   7 7
No Yes Leishmania major strain Friedlin   8 8
No Yes Leishmania infantum JPCM5 2.4   7 7
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   7 7
No Yes Trypanosoma vivax   7 6
No Yes Trypanosoma cruzi strain CL Brener   6 6
No Yes Trypanosoma congolense 2.4   7 7
No Yes Trypanosoma brucei gambiense v4.1   6 6
No Yes Trypanosoma brucei TREU927 v4.1   6 6
No Yes Ectocarpus siliculosus   12 10
No Yes Aureococcus anophagefferens   5 5
No Yes Albugo laibachii 22   9 9
No Yes Pythium iwayamai DAOM BR242034 22   9 9
No Yes Pythium arrhenomanes ATCC 12531 22   7 7
No Yes Pythium ultimum v1.7-2   9 8
No Yes Pythium aphanidermatum DAOM BR444 22   7 7
No Yes Pythium irregulare DAOM BR486 22   8 8
No Yes Pythium vexans DAOM BR484 22   7 7
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 6 6
No Yes Phytophthora sojae 1.1   7 7
No Yes Phytophthora infestans T30-4   8 8
No Yes Phytophthora capsici   9 9
No Yes Hyaloperonospora arabidopsidis 22   5 5
No Yes Phaeodactylum tricornutumCCAP 1055/1   7 7
No Yes Fragilariopsis cylindrus   7 7
No Yes Thalassiosira pseudonana CCMP1335   5 5
No Yes Perkinsus marinus ATCC 50983   8 8
No Yes Paramecium tetraurelia   16 16
No Yes Tetrahymena thermophila SB210 1   8 8
No Yes Ichthyophthirius multifiliis strain G5   6 6
No Yes Cryptosporidium hominis   5 4
No Yes Cryptosporidium muris   4 4
No Yes Cryptosporidium parvum Iowa II   5 4
No Yes Neospora caninum   3 3
No Yes Toxoplasma gondii VEG   3 3
No Yes Toxoplasma gondii ME49   4 4
No Yes Toxoplasma gondii GT1   4 4
No Yes Babesia bovis T2Bo   4 4
No Yes Theileria parva   2 2
No Yes Theileria annulata   2 2
No Yes Plasmodium falciparum 3D7   2 2
No Yes Plasmodium vivax SaI-1 7.0   2 2
No Yes Plasmodium knowlesi strain H   2 2
No Yes Plasmodium yoelii ssp. yoelii 1   2 2
No Yes Plasmodium chabaudi   2 2
No Yes Plasmodium berghei ANKA   2 2
No Yes Symbiodinium minutum clade B1 v1.2   8 8
No Yes Naegleria gruberi   11 11
No Yes Trichomonas vaginalis   13 13
No Yes Guillardia theta CCMP2712 v1.0   7 7
No Yes Emiliania huxleyi CCMP1516   11 11
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 24 24
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 19 19
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 9 9
No Yes Ascaris suum Victoria/Ghent Pig roundworm 9 9
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 12 12
No Yes Cryptococcus neoformans var. grubii H99   6 6
No Yes Cryptococcus neoformans B-3501A   8 8
No Yes Cryptococcus neoformans JEC21   8 8
No Yes Paracoccidioides brasiliensis Pb01   5 5
No Yes Paracoccidioides brasiliensis Pb03   5 5
No Yes Coccidioides posadasii str. Silveira   6 6
No Yes Coccidioides immitis RMSCC 3703   7 7
No Yes Coccidioides immitis RMSCC 2394   6 6
No Yes Coccidioides immitis H538.4   6 6
No Yes Ajellomyces dermatitidis ER-3   5 5
No Yes Histoplasma capsulatum H143   5 5
No Yes Histoplasma capsulatum H88   5 5
No Yes Histoplasma capsulatum G186AR   5 5
No Yes Aspergillus fumigatus A1163   5 5
No Yes Candida albicans WO-1   5 5
No Yes Saccharomyces cerevisiae UC5   2 2
No Yes Saccharomyces cerevisiae PW5   3 3
No Yes Saccharomyces cerevisiae FL100   2 2
No Yes Saccharomyces cerevisiae CLIB324   2 2
No Yes Saccharomyces cerevisiae CBS7960   4 4
No Yes Saccharomyces cerevisiae YJM269   4 4
No Yes Saccharomyces cerevisiae T7   4 4
No Yes Saccharomyces cerevisiae FostersB   2 2
No Yes Saccharomyces cerevisiae FostersO   2 2
No Yes Saccharomyces cerevisiae VL3   4 4
No Yes Saccharomyces cerevisiae Vin13   3 3
No Yes Saccharomyces cerevisiae LalvinQA23   2 2
No Yes Saccharomyces cerevisiae AWRI796   4 4
No Yes Saccharomyces cerevisiae Sigma1278b   4 4
No Yes Saccharomyces cerevisiae W303   4 4
No Yes Saccharomyces cerevisiae JAY291   4 4
No Yes Saccharomyces cerevisiae AWRI1631   2 2
No Yes Saccharomyces cerevisiae YPS163   3 3
No Yes Saccharomyces cerevisiae T73   2 2
No Yes Saccharomyces cerevisiae CLIB215   4 4
No Yes Saccharomyces cerevisiae YJM789   4 4
No Yes Saccharomyces cerevisiae YJM789   4 4
No Yes Saccharomyces cerevisiae RM11-1a   4 4
No Yes Saccharomyces cerevisiae RM11-1a   4 4
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 4 4
No Yes Schizosaccharomyces pombe 972h-   5 5
No Yes Batrachochytrium dendrobatidis JEL423   7 7
No Yes Batrachochytrium dendrobatidis JAM81   7 7
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 32 32
No Yes Hordeum vulgare 22 Domesticated barley 69 69
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 80 79
No Yes Trypanosoma brucei Lister 427 v4.1   6 6
No Yes Neospora caninum Nc-Liverpool 6.2   3 3
No Yes Plasmodium falciparum HB3   2 2
No Yes Plasmodium falciparum Dd2   2 2
No Yes Oscillatoria acuminata PCC 6304   1 1
No Yes Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069   1 1
No Yes Streptococcus gallolyticus subsp. gallolyticus ATCC 43143   1 1
No Yes Streptococcus suis 98HAH33   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 58 58
No Yes Homo sapiens (NCBI version) Human 24 24
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 12 12
No Yes Heliconius numata (Incomplete)   6 6
No Yes Loa loa v3.3 (Request) Eye worm 9 9
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 16 16
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 9 9
No Yes Moniliophthora perniciosa FA553 (Genome survey)   7 7
No Yes Encephalitozoon intestinalis (endoparasite)   2 2
No Yes Encephalitozoon cuniculi (endoparasite)   2 2
No Yes Picea sitchensis (Incomplete) Sitka spruce 5 5
No Yes Lotus japonicus (Early assembly)   44 44
No Yes Malus x domestica (Duplicate) Apple 84 82
No Yes Ricinus communis (Early assembly) Castor bean 32 32
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   97 86
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 48 48
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 48 48
No Yes Phoenix dactylifera (Early draft) Date palm 24 22
No Yes Homo sapiens 69_37 Human 13 13
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 13 13
No Yes Gorilla gorilla 69_3.1 Western gorilla 12 12
No Yes Pongo abelii 69_2 Sumatran orangutan 10 10
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 12 11
No Yes Macaca mulatta 69_1 Rhesus monkey 12 12
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 11 11
No Yes Otolemur garnettii 69_3 Small-eared galago 12 12
No Yes Microcebus murinus 69_1 Gray mouse lemur 13 11
No Yes Rattus norvegicus 69_3.4 Norway rat 13 13
No Yes Mus musculus 69_38 House mouse 12 12
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 13 11
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 11 11
No Yes Cavia porcellus 69_3 Domestic guinea pig 11 11
No Yes Oryctolagus cuniculus 69_2 Rabbit 13 13
No Yes Ochotona princeps 69 American pika 10 10
No Yes Tupaia belangeri 69 Northern tree shrew 10 9
No Yes Sus scrofa 69_10.2 Pig 14 14
No Yes Bos taurus 69_3.1 Cattle 12 12
No Yes Vicugna pacos 69_1 Alpaca 7 7
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 12 10
No Yes Mustela putorius furo 69_1.0 Domestic ferret 12 12
No Yes Ailuropoda melanoleuca 69_1 Giant panda 13 13
No Yes Canis familiaris 69_3.1 Dog 11 11
No Yes Felis catus 69 Domestic cat 13 10
No Yes Equus caballus 69_2 Horse 10 10
No Yes Myotis lucifugus 69_2.0 Little brown bat 18 17
No Yes Pteropus vampyrus 69_1 Large flying fox 14 12
No Yes Sorex araneus 69_1 European shrew 8 7
No Yes Erinaceus europaeus 69 Western European hedgehog 11 8
No Yes Procavia capensis 69_1 Cape rock hyrax 13 10
No Yes Loxodonta africana 69_3 African savanna elephant 10 10
No Yes Echinops telfairi 69 Small Madagascar hedgehog 18 13
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 9 7
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 9 8
No Yes Macropus eugenii 69_1.0 Tammar wallaby 14 10
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 11 11
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 12 12
No Yes Ornithorhynchus anatinus 69_5 Platypus 12 12
No Yes Petromyzon marinus 69_7.0 Sea lamprey 8 8
No Yes Meleagris gallopavo 69_2 Turkey 10 10
No Yes Gallus gallus 69_2 Chicken 12 12
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 14 14
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 13 13
No Yes Anolis carolinensis 69_2.0 Green anole 14 14
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 12 11
No Yes Latimeria chalumnae 69_1 Coelacanth 13 13
No Yes Gadus morhua 69_1 Atlantic cod 15 15
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 19 19
No Yes Takifugu rubripes 69_4 Torafugu 17 17
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 16 16
No Yes Oryzias latipes 69_1 Japanese medaka 16 16
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 15 15
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 15 15
No Yes Danio rerio 69_9 Zebrafish 17 17
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 8 8
No Yes Ciona intestinalis 69 Vase tunicate 9 9
No Yes Drosophila melanogaster 69_5 Fruit fly 10 10
No Yes Caenorhabditis elegans 69_215 Roundworm 9 9
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 4 4
No Yes Arabidopsis thaliana 10 Thale cress 40 40
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   2 2
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   2 2
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   1 1
No Yes NCBI 2017_08 genome   14116 14019
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   163 160
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1363 1350
No Yes Uniprot 2018_03 genome   17538 17323
No Yes Global Ocean Sampling Expedition (GOS)   31 31
No Yes PDB chains (SCOP 1.75) (PDB)   6 6
No Yes Protein Data Bank (all PDB sequenc)   49 49
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   115 115
No Yes TargetDB (Targets)   44 44

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