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Lamin A/C globular tail domain superfamily domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   34764 34764
No Yes Homo sapiens 76_38 Human 20 20
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 5 5
No Yes Gorilla gorilla 76_3.1 Western gorilla 7 7
No Yes Pongo abelii 76_2 Sumatran orangutan 6 6
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 4 4
No Yes Papio anubis 76 Olive baboon 6 6
No Yes Macaca mulatta 76_1 Rhesus monkey 8 8
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 10 10
No Yes Otolemur garnettii 76_3 Small-eared galago 6 6
No Yes Microcebus murinus 76_1 Gray mouse lemur 3 3
No Yes Rattus norvegicus 76_5.0 Norway rat 6 6
No Yes Mus musculus 76_38 House mouse 12 12
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 5 5
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 8 8
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 5 5
No Yes Cavia porcellus 76_3 Domestic guinea pig 7 7
No Yes Oryctolagus cuniculus 76_2 Rabbit 4 4
No Yes Ochotona princeps 76 American pika 4 4
No Yes Tupaia belangeri 76 Northern tree shrew 5 4
No Yes Sus scrofa 76_10.2 Pig 5 5
No Yes Bos taurus 76_3.1 Cattle 5 5
No Yes Ovis aries 76_3.1 Sheep 6 6
No Yes Vicugna pacos 76_1 Alpaca 2 2
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 5 5
No Yes Mustela putorius furo 76_1.0 Domestic ferret 5 5
No Yes Ailuropoda melanoleuca 76_1 Giant panda 6 6
No Yes Canis familiaris 76_3.1 Dog 8 8
No Yes Felis catus 76_6.2 Domestic cat 5 5
No Yes Equus caballus 76_2 Horse 5 5
No Yes Myotis lucifugus 76_2.0 Little brown bat 4 4
No Yes Pteropus vampyrus 76_1 Large flying fox 4 4
No Yes Sorex araneus 76_1 European shrew 3 3
No Yes Erinaceus europaeus 76 Western European hedgehog 3 3
No Yes Procavia capensis 76_1 Cape rock hyrax 4 4
No Yes Loxodonta africana 76_3 African savanna elephant 5 5
No Yes Echinops telfairi 76 Small Madagascar hedgehog 3 3
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 4 4
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 3 3
No Yes Macropus eugenii 76_1.0 Tammar wallaby 6 5
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 7 7
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 5 5
No Yes Ornithorhynchus anatinus 76_5 Platypus 5 5
No Yes Saccoglossus kowalevskii v3.0   6 6
No Yes Petromyzon marinus 76_7.0 Sea lamprey 3 3
No Yes Meleagris gallopavo 76_2 Turkey 4 4
No Yes Gallus gallus 76_4 Chicken 3 3
No Yes Anas platyrhynchos 76_1.0 Mallard 5 5
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 4 4
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 4 4
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 7 7
No Yes Anolis carolinensis 76_2.0 Green anole 6 6
No Yes Xenopus laevis African clawed frog 24 24
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 6 6
No Yes Latimeria chalumnae 76_1 Coelacanth 5 5
No Yes Lepisosteus oculatus 76 Spotted gar 6 6
No Yes Gadus morhua 76_1 Atlantic cod 5 5
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 6 6
No Yes Takifugu rubripes 76_4 Torafugu 24 23
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 8 8
No Yes Oryzias latipes 76_1 Japanese medaka 7 7
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 4 4
No Yes Poecilia formosa 76 Amazon molly 3 3
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 5 5
No Yes Astyanax mexicanus 76 Mexican tetra 4 4
No Yes Danio rerio 76_9 Zebrafish 6 6
No Yes Ciona intestinalis 76 Vase tunicate 1 1
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 6 6
No Yes Adineta vaga   29 29
No Yes Octopus bimaculoides 280   9 9
No Yes Crassostrea gigas 22 Pacific oyster 4 4
No Yes Lottia gigantea Owl limpet 2 2
No Yes Helobdella robusta   13 13
No Yes Capitella sp. I   3 3
No Yes Danaus plexippus OGS1.0 Monarch butterfly 1 1
No Yes Heliconius melpomene Postman butterfly 1 1
No Yes Bombyx mori Domestic silkworm 1 1
No Yes Nasonia vitripennis Jewel wasp 1 1
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 3 3
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 1 1
No Yes Linepithema humile v1.1 Argentine ant 1 1
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 1 1
No Yes Solenopsis invicta v.2.2.3 Red fire ant 1 1
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 1 1
No Yes Atta cephalotes v1.1   1 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 1 1
No Yes Lucilia cuprina Australian sheep blowfly 2 2
No Yes Drosophila grimshawi 1.3   2 2
No Yes Drosophila willistoni 1.3   2 2
No Yes Drosophila pseudoobscura 2.13   2 2
No Yes Drosophila persimilis 1.3   2 2
No Yes Drosophila suzukii   2 2
No Yes Drosophila yakuba 1.3   2 2
No Yes Drosophila simulans 1.3   1 1
No Yes Drosophila sechellia 1.3   2 2
No Yes Drosophila melanogaster 76_5 Fruit fly 5 5
No Yes Drosophila erecta 1.3   2 2
No Yes Drosophila ananassae 1.3   2 2
No Yes Drosophila virilis 1.2   2 2
No Yes Drosophila mojavensis 1.3   2 2
No Yes Megaselia scalaris 22   1 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 2 2
No Yes Culex pipiens quinquefasciatus Southern house mosquito 2 2
No Yes Anopheles darlingi 22 American malaria mosquito 2 2
No Yes Anopheles gambiae 49_3j African malaria mosquito 2 2
No Yes Tribolium castaneum 3.0 Red flour beetle 1 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 1 1
No Yes Acyrthosiphon pisum Pea aphid 1 1
No Yes Rhodnius prolixus 22   1 1
No Yes Daphnia pulex Common water flea 2 2
No Yes Strigamia maritima 22   1 1
No Yes Sarcoptes scabiei   1 1
No Yes Tetranychus urticae Two-spotted spider mite 1 1
No Yes Ixodes scapularis (Preliminary) Black-legged tick 1 1
No Yes Pristionchus pacificus   5 5
No Yes Meloidogyne incognita Southern root-knot nematode 7 7
No Yes Meloidogyne hapla   2 2
No Yes Onchocerca volvulus 22   5 5
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 9 9
No Yes Caenorhabditis japonica   10 9
No Yes Caenorhabditis brenneri   10 10
No Yes Caenorhabditis remanei   11 11
No Yes Caenorhabditis elegans 76_235 Roundworm 25 25
No Yes Caenorhabditis briggsae 2   13 13
No Yes Trichinella spiralis 22   3 3
No Yes Hymenolepis microstoma   4 4
No Yes Echinococcus multilocularis   4 4
No Yes Echinococcus granulosus   4 4
No Yes Taenia solium Pork tapeworm 4 4
No Yes Schistosoma mansoni   5 5
No Yes Mnemiopsis leidyi Sea walnut 2 2
No Yes Acropora digitifera v1.0   2 2
No Yes Nematostella vectensis 1.0 Starlet sea anemone 3 3
No Yes Hydra vulgaris   1 1
No Yes Amphimedon queenslandica   1 1
No Yes Trichoplax adhaerens   1 1
No Yes Proterospongia sp. ATCC 50818   3 3
No Yes Monosiga brevicollis   3 3
No Yes Sphaeroforma arctica JP610   3 3
No Yes Capsaspora owczarzaki ATCC 30864   3 3
No Yes Magnaporthe poae ATCC 64411 22   1 1
No Yes Cryphonectria parasitica Chestnut blight fungus 1 1
No Yes Fusarium oxysporum f. sp. lycopersici 4286   2 2
No Yes Fusarium verticillioides 7600   1 1
No Yes Trichoderma virens Gv29-8   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus nidulans FGSC A4   2 2
No Yes Aspergillus sydowii v1.0   1 1
No Yes Aspergillus versicolor v1.0   1 1
No Yes Aspergillus carbonarius ITEM 5010   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus wentii v1.0   1 1
No Yes Aspergillus oryzae RIB40   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Aspergillus flavus NRRL3357   1 1
No Yes Aspergillus clavatus NRRL 1   1 1
No Yes Dictyostelium discoideum   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Volvox carteri f. nagariensis   2 2
No Yes Volvox carteri v199   2 2
No Yes Chlamydomonas reinhardtii 4.0   2 1
No Yes Ostreococcus sp. RCC809   2 2
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   1 1
No Yes Bathycoccus prasinos   9 6
No Yes Micromonas sp. RCC299   3 1
No Yes Ectocarpus siliculosus   1 1
No Yes Albugo laibachii 22   2 2
No Yes Pythium iwayamai DAOM BR242034 22   2 2
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   2 2
No Yes Pythium irregulare DAOM BR486 22   2 2
No Yes Pythium vexans DAOM BR484 22   2 2
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora sojae 1.1   2 2
No Yes Phytophthora infestans T30-4   2 2
No Yes Phytophthora capsici   1 1
No Yes Hyaloperonospora arabidopsidis 22   1 1
No Yes Fragilariopsis cylindrus   2 2
No Yes Emiliania huxleyi CCMP1516   3 1
No Yes Acholeplasma laidlawii PG-8A   1 1
No Yes Acaryochloris marina MBIC11017   2 2
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Synechococcus sp. PCC 7502   1 1
No Yes Microcoleus sp. PCC 7113   2 2
No Yes Gloeobacter violaceus PCC 7421   1 1
No Yes Rivularia sp. PCC 7116   3 3
No Yes Calothrix sp. PCC 7507   1 1
No Yes Anabaena variabilis ATCC 29413   2 2
No Yes Nostoc sp. PCC 7107   1 1
No Yes Nostoc punctiforme PCC 73102   1 1
No Yes Nostoc sp. PCC 7120   2 2
No Yes Nostoc sp. PCC 7524   1 1
No Yes Conexibacter woesei DSM 14684   5 2
No Yes Ilumatobacter coccineus   7 2
No Yes Thermobispora bispora DSM 43833   1 1
No Yes Catenulispora acidiphila DSM 44928   1 1
No Yes Stackebrandtia nassauensis DSM 44728   4 4
No Yes Frankia alni ACN14a   1 1
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   1 1
No Yes Streptosporangium roseum DSM 43021   3 3
No Yes Kitasatospora setae KM-6054   2 1
No Yes Streptomyces coelicolor A3(2)   2 2
No Yes Streptomyces sp. PAMC26508   2 2
No Yes Streptomyces flavogriseus ATCC 33331   2 2
No Yes Streptomyces sp. SirexAA-E   1 1
No Yes Streptomyces griseus subsp. griseus NBRC 13350   1 1
No Yes Streptomyces bingchenggensis BCW-1   3 3
No Yes Streptomyces violaceusniger Tu 4113   2 2
No Yes Streptomyces avermitilis MA-4680   3 3
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Streptomyces scabiei 87.22   2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   6 6
No Yes Saccharopolyspora erythraea NRRL 2338   2 2
No Yes Kribbella flavida DSM 17836   1 1
No Yes Microlunatus phosphovorus NM-1   1 1
No Yes Verrucosispora maris AB-18-032   1 1
No Yes Actinoplanes sp. N902-109   4 4
No Yes Actinoplanes sp. SE50/110   2 2
No Yes Actinoplanes missouriensis 431   2 2
No Yes Corynebacterium resistens DSM 45100   1 1
No Yes Corynebacterium aurimucosum ATCC 700975   1 1
No Yes Corynebacterium efficiens YS-314   3 2
No Yes Corynebacterium jeikeium K411   1 1
No Yes Corynebacterium glutamicum R   2 2
No Yes Kytococcus sedentarius DSM 20547   2 2
No Yes Beutenbergia cavernae DSM 12333   2 2
No Yes Isoptericola variabilis 225   1 1
No Yes Xylanimonas cellulosilytica DSM 15894   1 1
No Yes Cellulomonas fimi ATCC 484   1 1
No Yes [Cellvibrio] gilvus ATCC 13127   2 2
No Yes Arthrobacter phenanthrenivorans Sphe3   1 1
No Yes Arthrobacter chlorophenolicus A6   1 1
No Yes Arthrobacter aurescens TC1   1 1
No Yes Kocuria rhizophila DC2201   1 1
No Yes Arthrobacter sp. Rue61a   1 1
No Yes Arthrobacter sp. FB24   1 1
No Yes Micrococcus luteus NCTC 2665   1 1
No Yes Bifidobacterium longum subsp. longum JDM301   1 1
No Yes Bifidobacterium bifidum S17   1 1
No Yes Arcanobacterium haemolyticum DSM 20595   1 1
No Yes Caldilinea aerophila DSM 14535 = NBRC 104270   12 6
No Yes Anaerolinea thermophila UNI-1   1 1
No Yes Herpetosiphon aurantiacus DSM 785   2 2
No Yes Roseiflexus sp. RS-1   3 3
No Yes Roseiflexus castenholzii DSM 13941   2 2
No Yes Chloroflexus sp. MS-G   5 4
No Yes Chloroflexus sp. Y-400-fl   6 3
No Yes Chloroflexus aggregans DSM 9485   8 4
No Yes Chloroflexus aurantiacus J-10-fl   6 3
No Yes Deinococcus maricopensis DSM 21211   2 2
No Yes Deinococcus geothermalis DSM 11300   1 1
No Yes Deinococcus proteolyticus MRP   1 1
No Yes Thermus sp. CCB_US3_UF1   2 2
No Yes Thermus thermophilus HB27   1 1
No Yes Clostridium clariflavum DSM 19732   2 2
No Yes Eubacterium siraeum   1 1
No Yes Clostridium cellulolyticum H10   1 1
No Yes Clostridium thermocellum ATCC 27405   3 2
No Yes Ethanoligenens harbinense YUAN-3   1 1
No Yes Ruminococcus albus 7   2 2
No Yes Desulfosporosinus orientis DSM 765   1 1
No Yes Acetobacterium woodii DSM 1030   1 1
No Yes Clostridium saccharolyticum WM1   1 1
No Yes Roseburia hominis A2-183   1 1
No Yes Butyrivibrio proteoclasticus B316   1 1
No Yes Syntrophothermus lipocalidus DSM 12680   1 1
No Yes Alkaliphilus metalliredigens QYMF   1 1
No Yes Clostridium sp. BNL1100   1 1
No Yes Clostridium ljungdahlii DSM 13528   1 1
No Yes Clostridium kluyveri DSM 555   1 1
No Yes Coprothermobacter proteolyticus DSM 5265   1 1
No Yes Halothermothrix orenii H 168   1 1
No Yes Exiguobacterium sp. AT1b   1 1
No Yes Exiguobacterium sibiricum 255-15   1 1
No Yes Kyrpidia tusciae DSM 2912   1 1
No Yes Brevibacillus brevis NBRC 100599   1 1
No Yes Paenibacillus sp. JDR-2   2 2
No Yes Paenibacillus mucilaginosus 3016   2 2
No Yes Geobacillus thermoglucosidasius C56-YS93   2 1
No Yes Lysinibacillus sphaericus C3-41   1 1
No Yes Bacillus sp. JS   1 1
No Yes Bacillus subtilis subsp. subtilis str. 168   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Bacillus clausii KSM-K16   2 1
No Yes Bacillus pumilus SAFR-032   1 1
No Yes Candidatus Cloacamonas acidaminovorans   1 1
No Yes Gemmatimonas aurantiaca T-27   4 1
No Yes Melioribacter roseus P3M   5 1
No Yes Ignavibacterium album JCM 16511   6 1
No Yes Chlorobaculum parvum NCIB 8327   1 1
No Yes Chloroherpeton thalassium ATCC 35110   5 3
No Yes Prosthecochloris aestuarii DSM 271   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   4 4
No Yes Saprospira grandis str. Lewin   5 3
No Yes Niastella koreensis GR20-10   2 2
No Yes Chitinophaga pinensis DSM 2588   1 1
No Yes Flexibacter litoralis DSM 6794   4 1
No Yes Belliella baltica DSM 15883   2 1
No Yes Cyclobacterium marinum DSM 745   5 2
No Yes Marivirga tractuosa DSM 4126   2 1
No Yes Dyadobacter fermentans DSM 18053   1 1
No Yes Cytophaga hutchinsonii ATCC 33406   1 1
No Yes Parabacteroides distasonis ATCC 8503   2 2
No Yes Tannerella forsythia ATCC 43037   2 2
No Yes Paludibacter propionicigenes WB4   1 1
No Yes Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2   1 1
No Yes Bacteroides sp. CF50   2 2
No Yes Prevotella melaninogenica ATCC 25845   1 1
No Yes Porphyromonas asaccharolytica DSM 20707   1 1
No Yes Porphyromonas gingivalis ATCC 33277   1 1
No Yes Bacteroides salanitronis DSM 18170   1 1
No Yes Bacteroides helcogenes P 36-108   1 1
No Yes Bacteroides vulgatus ATCC 8482   1 1
No Yes Bacteroides thetaiotaomicron VPI-5482   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Pedobacter saltans DSM 12145   2 1
No Yes Solitalea canadensis DSM 3403   2 1
No Yes Sphingobacterium sp. 21   1 1
No Yes Fluviicola taffensis DSM 16823   3 2
No Yes Owenweeksia hongkongensis DSM 17368   4 3
No Yes Zunongwangia profunda SM-A87   1 1
No Yes Lacinutrix sp. 5H-3-7-4   1 1
No Yes Maribacter sp. HTCC2170   4 1
No Yes Robiginitalea biformata HTCC2501   1 1
No Yes Croceibacter atlanticus HTCC2559   2 2
No Yes Zobellia galactanivorans   1 1
No Yes Muricauda ruestringensis DSM 13258   1 1
No Yes Cellulophaga algicola DSM 14237   1 1
No Yes Cellulophaga lytica DSM 7489   1 1
No Yes Flavobacteriaceae bacterium 3519-10   1 1
No Yes Polaribacter sp. MED152   2 2
No Yes Capnocytophaga ochracea DSM 7271   1 1
No Yes Flavobacterium indicum GPTSA100-9   1 1
No Yes Flavobacterium psychrophilum JIP02/86   1 1
No Yes Fibrobacter succinogenes subsp. succinogenes S85   3 3
No Yes Coraliomargarita akajimensis DSM 45221   6 2
No Yes Opitutus terrae PB90-1   1 1
No Yes Turneriella parva DSM 21527   8 4
No Yes Treponema azotonutricium ZAS-9   3 2
No Yes Spirochaeta africana DSM 8902   1 1
No Yes Petrotoga mobilis SJ95   1 1
No Yes Kosmotoga olearia TBF 19.5.1   1 1
No Yes Thermotoga lettingae TMO   1 1
No Yes Dictyoglomus turgidum DSM 6724   2 2
No Yes Dictyoglomus thermophilum H-6-12   3 2
No Yes Caldisericum exile AZM16c01   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   2 2
No Yes Granulicella mallensis MP5ACTX8   2 2
No Yes Terriglobus saanensis SP1PR4   1 1
No Yes Acidobacterium capsulatum ATCC 51196   1 1
No Yes Candidatus Methylomirabilis oxyfera   1 1
No Yes Desulfatibacillum alkenivorans AK-01   7 4
No Yes Desulfovibrio piezophilus   1 1
No Yes Haliangium ochraceum DSM 14365   3 3
No Yes Sorangium cellulosum 'So ce 56'   9 9
No Yes Anaeromyxobacter sp. Fw109-5   1 1
No Yes Anaeromyxobacter dehalogenans 2CP-1   1 1
No Yes Stigmatella aurantiaca DW4/3-1   5 5
No Yes Corallococcus coralloides DSM 2259   7 7
No Yes Myxococcus xanthus DK 1622   7 7
No Yes Myxococcus fulvus HW-1   5 5
No Yes Rubrivivax gelatinosus IL144   1 1
No Yes Burkholderia xenovorans LB400   1 1
No Yes Nitrosospira multiformis ATCC 25196   1 1
No Yes Methylotenera versatilis 301   1 1
No Yes Methylobacillus flagellatus KT   1 1
No Yes Sphingobium japonicum UT26S   1 1
No Yes Dinoroseobacter shibae DFL 12   1 1
No Yes Rhizobium leguminosarum bv. viciae 3841   1 1
No Yes Saccharophagus degradans 2-40   1 1
No Yes Aliivibrio salmonicida LFI1238   1 1
No Yes Vibrio fischeri MJ11   1 1
No Yes Vibrio splendidus LGP32   1 1
No Yes Vibrio anguillarum 775   1 1
No Yes Vibrio furnissii NCTC 11218   1 1
No Yes Vibrio cholerae O395   1 1
No Yes Psychromonas ingrahamii 37   1 1
No Yes Shewanella loihica PV-4   2 2
No Yes Shewanella sediminis HAW-EB3   2 2
No Yes Shewanella denitrificans OS217   3 3
No Yes Shewanella oneidensis MR-1   2 2
No Yes Shewanella baltica OS185   1 1
No Yes Shewanella woodyi ATCC 51908   1 1
No Yes Shewanella sp. MR-4   2 2
No Yes Shewanella amazonensis SB2B   1 1
No Yes Shewanella violacea DSS12   1 1
No Yes Shewanella frigidimarina NCIMB 400   2 2
No Yes Shewanella putrefaciens CN-32   1 1
No Yes Colwellia psychrerythraea 34H   1 1
No Yes Pseudoalteromonas sp. SM9913   1 1
No Yes Pseudoalteromonas atlantica T6c   1 1
No Yes Pseudoalteromonas haloplanktis TAC125   1 1
No Yes Marinobacter hydrocarbonoclasticus ATCC 49840   1 1
No Yes Hahella chejuensis KCTC 2396   1 1
No Yes Marinomonas mediterranea MMB-1   4 3
No Yes Halomonas elongata DSM 2581   1 1
No Yes Nitrosococcus watsonii C-113   1 1
No Yes Nitrosococcus halophilus Nc4   1 1
No Yes Nitrosococcus oceani ATCC 19707   1 1
No Yes Cenarchaeum symbiosum A   1 1
No Yes Candidatus Nitrosopumilus sp. AR2   1 1
No Yes Nitrosopumilus maritimus SCM1   1 1
No Yes Vulcanisaeta moutnovskia 768-28   1 1
No Yes Vulcanisaeta distributa DSM 14429   1 1
No Yes Caldivirga maquilingensis IC-167   1 1
No Yes halophilic archaeon DL31   1 1
No Yes Methanosaeta harundinacea 6Ac   7 7
No Yes Methanosaeta thermophila PT   4 4
No Yes Methanosaeta concilii GP6   9 9
No Yes Methanohalobium evestigatum Z-7303   2 2
No Yes Methanosarcina mazei Go1   1 1
No Yes Methanosphaerula palustris E1-9c   4 4
No Yes Methanoplanus petrolearius DSM 11571   1 1
No Yes Methanoculleus bourgensis MS2   1 1
No Yes Methanoculleus marisnigri JR1   1 1
No Yes Ferroglobus placidus DSM 10642   1 1
No Yes Archaeoglobus profundus DSM 5631   1 1
No Yes Thermococcus sp. 4557   1 1
No Yes Thermococcus onnurineus NA1   1 1
No Yes Thermococcus kodakarensis KOD1   1 1
No Yes Thermoplasmatales archaeon BRNA1   2 2
No Yes Halopiger xanaduensis SH-6   2 2
No Yes Halorubrum lacusprofundi ATCC 49239   1 1
No Yes Haloquadratum walsbyi DSM 16790   1 1
No Yes Halogeometricum borinquense DSM 11551   1 1
No Yes Haloferax mediterranei ATCC 33500   2 2
No Yes Haloferax volcanii DS2   1 1
No Yes Halomicrobium mukohataei DSM 12286   1 1
No Yes Haloarcula hispanica ATCC 33960   1 1
No Yes Haloarcula marismortui ATCC 43049   2 2
No Yes Halalkalicoccus jeotgali B3   1 1
No Yes Halobacterium salinarum R1   1 1
No Yes Halobacterium sp. NRC-1   1 1
No Yes Aciduliprofundum boonei T469   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 9 9
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 2 2
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 2 2
No Yes Ascaris suum Victoria/Ghent Pig roundworm 7 6
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 17 17
No Yes Chamaesiphon minutus PCC 6605   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-P   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-N   1 1
No Yes Synechocystis sp. PCC 6803 substr. GT-I   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Cyanothece sp. ATCC 51142   1 1
No Yes Calothrix parietina Calothrix sp. PCC 6303   1 1
No Yes Anabaena cylindrica PCC 7122   1 1
No Yes Frankia sp. EuI1c   2 1
No Yes Frankia sp. CcI3   1 1
No Yes Streptomyces albus J1074   1 1
No Yes Streptomyces rapamycinicus NRRL 5491   1 1
No Yes Streptomyces davawensis JCM 4913   3 3
No Yes Streptomyces fulvissimus DSM 40593   1 1
No Yes Streptomyces venezuelae ATCC 10712   1 1
No Yes Streptomyces collinus Tu 365   3 3
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   6 6
No Yes Saccharothrix espanaensis DSM 44229   2 2
No Yes Amycolatopsis orientalis HCCB10007   2 2
No Yes Propionibacterium avidum 44067   1 1
No Yes Actinoplanes friuliensis DSM 7358   4 4
No Yes Corynebacterium maris DSM 45190   1 1
No Yes Corynebacterium halotolerans YIM 70093 = DSM 44683   1 1
No Yes Corynebacterium terpenotabidum Y-11   1 1
No Yes Corynebacterium callunae DSM 20147   2 2
No Yes Corynebacterium glutamicum MB001   2 2
No Yes Corynebacterium glutamicum SCgG2   2 2
No Yes Corynebacterium glutamicum SCgG1   2 2
No Yes Corynebacterium glutamicum ATCC 13032   2 2
No Yes Corynebacterium glutamicum ATCC 13032   2 2
No Yes Corynebacterium glutamicum ATCC 13032   2 2
No Yes Clavibacter michiganensis subsp. sepedonicus   1 1
No Yes Bifidobacterium longum DJO10A   1 1
No Yes Bifidobacterium longum subsp. infantis 157F   1 1
No Yes Bifidobacterium longum subsp. longum KACC 91563   1 1
No Yes Bifidobacterium longum subsp. longum JCM 1217   1 1
No Yes Bifidobacterium bifidum PRL2010   1 1
No Yes Bifidobacterium bifidum BGN4   1 1
No Yes Chthonomonas calidirosea T49   1 1
No Yes Deinococcus peraridilitoris DSM 19664   1 1
No Yes Thermus thermophilus JL-18   2 2
No Yes Eubacterium siraeum V10Sc8a   1 1
No Yes Clostridium thermocellum DSM 1313   3 2
No Yes Ruminococcus champanellensis 18P13   1 1
No Yes Desulfosporosinus meridiei DSM 13257   2 2
No Yes Clostridium autoethanogenum DSM 10061   1 1
No Yes Clostridium kluyveri NBRC 12016   1 1
No Yes Halobacteroides halobius DSM 5150   1 1
No Yes Exiguobacterium antarcticum B7   1 1
No Yes Thermobacillus composti KWC4   1 1
No Yes Paenibacillus sp. Y412MC10   4 4
No Yes Paenibacillus mucilaginosus KNP414   2 2
No Yes Paenibacillus mucilaginosus K02   2 2
No Yes Bacillus licheniformis 9945A   1 1
No Yes Bacillus subtilis PY79   1 1
No Yes Bacillus subtilis XF-1   1 1
No Yes Bacillus subtilis QB928   1 1
No Yes Bacillus subtilis BSn5   1 1
No Yes Bacillus subtilis subsp. subtilis str. BAB-1   1 1
No Yes Bacillus subtilis subsp. subtilis str. RO-NN-1   1 1
No Yes Bacillus subtilis subsp. subtilis 6051-HGW   1 1
No Yes Bacillus subtilis subsp. spizizenii TU-B-10   1 1
No Yes Bacillus subtilis subsp. spizizenii str. W23   1 1
No Yes Bacillus subtilis subsp. natto BEST195   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Bacillus infantis NRRL B-14911   4 2
No Yes Chlorobium phaeobacteroides BS1   2 2
No Yes Echinicola vietnamensis DSM 17526   3 2
No Yes Emticicia oligotrophica DSM 17448   2 1
No Yes Porphyromonas gingivalis TDC60   1 1
No Yes Porphyromonas gingivalis W83   1 1
No Yes Bacteroides xylanisolvens XB1A   1 1
No Yes Bacteroides fragilis 638R   1 1
No Yes Bacteroides fragilis NCTC 9343   1 1
No Yes Nonlabens dokdonensis DSW-6   7 4
No Yes Psychroflexus torquis ATCC 700755   3 3
No Yes Fibrobacter succinogenes subsp. succinogenes S85   3 3
No Yes Desulfocapsa sulfexigens DSM 10523   1 1
No Yes Sorangium cellulosum So0157-2   5 5
No Yes Anaeromyxobacter sp. K   1 1
No Yes Anaeromyxobacter dehalogenans 2CP-C   1 1
No Yes Myxococcus stipitatus DSM 14675   2 2
No Yes Rhizobium etli bv. mimosae str. Mim1   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   1 1
No Yes Bradyrhizobium japonicum USDA 6   1 1
No Yes Vibrio fischeri ES114   1 1
No Yes Vibrio sp. EJY3   1 1
No Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749   1 1
No Yes Vibrio anguillarum Listonella anguillarum M3   1 1
No Yes Vibrio nigripulchritudo VibrioScope   4 3
No Yes Vibrio cholerae LMA3984-4   1 1
No Yes Vibrio cholerae M66-2   1 1
No Yes Vibrio cholerae O395   1 1
No Yes Vibrio cholerae IEC224   1 1
No Yes Vibrio cholerae O1 str. 2010EL-1786   1 1
No Yes Vibrio cholerae MJ-1236   1 1
No Yes Vibrio cholerae O1 biovar El Tor str. N16961   1 1
No Yes Shewanella sp. W3-18-1   1 1
No Yes Shewanella sp. ANA-3   2 2
No Yes Shewanella baltica BA175   2 2
No Yes Shewanella baltica OS678   2 2
No Yes Shewanella baltica OS117   2 2
No Yes Shewanella baltica OS223   1 1
No Yes Shewanella baltica OS195   2 2
No Yes Shewanella baltica OS155   2 2
No Yes Shewanella sp. MR-7   2 2
No Yes Shewanella putrefaciens 200   1 1
No Yes Alcanivorax dieselolei B5   1 1
No Yes Candidatus Nitrososphaera gargensis Ga9.2   1 1
No Yes Candidatus Nitrosoarchaeum koreensis Candidatus Nitrosopumilus koreensis AR1   1 1
No Yes Methanomethylovorans hollandica DSM 15978   3 3
No Yes Methanosarcina mazei Tuc01   1 1
No Yes Methanoregula formicica Methanoregula formicicum SMSP   1 1
No Yes Archaeoglobus sulfaticallidus PM70-1   2 2
No Yes Candidatus Methanomethylophilus alvus Mx1201   2 2
No Yes Natrinema pellirubrum DSM 15624   1 1
No Yes Natronococcus occultus SP4   1 1
No Yes Haloquadratum walsbyi C23   1 1
No Yes Halorhabdus tiamatea SARL4B   2 2
No Yes Haloarcula hispanica N601   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 22 22
No Yes Homo sapiens (NCBI version) Human 11 11
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 5 5
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 6 6
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 5 5
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 4 4
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Acholeplasma laidlawii PG-8A (duplicate)   1 1
No Yes Homo sapiens 69_37 Human 5 5
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 5 5
No Yes Gorilla gorilla 69_3.1 Western gorilla 5 5
No Yes Pongo abelii 69_2 Sumatran orangutan 5 5
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 4 4
No Yes Macaca mulatta 69_1 Rhesus monkey 5 5
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 4 4
No Yes Otolemur garnettii 69_3 Small-eared galago 5 5
No Yes Microcebus murinus 69_1 Gray mouse lemur 3 3
No Yes Rattus norvegicus 69_3.4 Norway rat 6 6
No Yes Mus musculus 69_38 House mouse 5 5
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 5 5
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 5 5
No Yes Cavia porcellus 69_3 Domestic guinea pig 6 6
No Yes Oryctolagus cuniculus 69_2 Rabbit 3 3
No Yes Ochotona princeps 69 American pika 4 4
No Yes Tupaia belangeri 69 Northern tree shrew 5 4
No Yes Sus scrofa 69_10.2 Pig 5 5
No Yes Bos taurus 69_3.1 Cattle 5 5
No Yes Vicugna pacos 69_1 Alpaca 2 2
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 5 5
No Yes Mustela putorius furo 69_1.0 Domestic ferret 5 5
No Yes Ailuropoda melanoleuca 69_1 Giant panda 5 5
No Yes Canis familiaris 69_3.1 Dog 5 5
No Yes Felis catus 69 Domestic cat 5 4
No Yes Equus caballus 69_2 Horse 5 5
No Yes Myotis lucifugus 69_2.0 Little brown bat 4 4
No Yes Pteropus vampyrus 69_1 Large flying fox 4 4
No Yes Sorex araneus 69_1 European shrew 3 3
No Yes Erinaceus europaeus 69 Western European hedgehog 3 3
No Yes Procavia capensis 69_1 Cape rock hyrax 4 4
No Yes Loxodonta africana 69_3 African savanna elephant 5 5
No Yes Echinops telfairi 69 Small Madagascar hedgehog 3 3
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 1 1
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 3 3
No Yes Macropus eugenii 69_1.0 Tammar wallaby 6 5
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 5 5
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 5 5
No Yes Ornithorhynchus anatinus 69_5 Platypus 4 4
No Yes Petromyzon marinus 69_7.0 Sea lamprey 2 2
No Yes Meleagris gallopavo 69_2 Turkey 3 3
No Yes Gallus gallus 69_2 Chicken 3 3
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 4 4
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 6 6
No Yes Anolis carolinensis 69_2.0 Green anole 6 6
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 4 4
No Yes Latimeria chalumnae 69_1 Coelacanth 5 5
No Yes Gadus morhua 69_1 Atlantic cod 5 5
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 5 5
No Yes Takifugu rubripes 69_4 Torafugu 6 5
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 5 5
No Yes Oryzias latipes 69_1 Japanese medaka 4 4
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 4 4
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 4 4
No Yes Danio rerio 69_9 Zebrafish 4 4
No Yes Ciona intestinalis 69 Vase tunicate 1 1
No Yes Drosophila melanogaster 69_5 Fruit fly 2 2
No Yes Caenorhabditis elegans 69_215 Roundworm 12 12
No Yes 1_050719N (meta-genome)   6 4
No Yes 1_Upper_euphotic (meta-genome)   3 3
No Yes 2_050719S (meta-genome)   12 11
No Yes 2_Base_of_chrolophyll_max (meta-genome)   3 3
No Yes 3_050719R (meta-genome)   11 11
No Yes 3_Below_base_of_euphotic (meta-genome)   2 2
No Yes 4_050719Q (meta-genome)   18 18
No Yes 4_Deep_abyss (meta-genome)   2 2
No Yes 5_050719P (meta-genome)   18 16
No Yes 5_Below_upper_mesopelagic (meta-genome)   5 5
No Yes 6_Upper_euphotic (meta-genome)   2 2
No Yes 7_Oxygen_minimum_layer (meta-genome)   9 9
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   2 2
No Yes Anaerobic methane oxidation (AOM) community from Eel River Basin sediment, California (meta-genome)   3 3
No Yes Bath Hot Springs, planktonic community (meta-genome)   1 1
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   29 26
No Yes Dump top (Dump top) (meta-genome)   28 26
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   8 7
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   8 8
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   4 4
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   28 25
No Yes Fungus garden combined (combined) (meta-genome)   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   11 9
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   8 8
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   6 6
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   5 5
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   7 7
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   8 8
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP10 from Narrow Gauge (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   8 7
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   15 15
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   11 10
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   38 26
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   14 13
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   16 16
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   19 18
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   16 16
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   14 13
No Yes Human Gut Community Subject 7 (meta-genome)   3 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   8 8
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   4 4
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   10 10
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   96 88
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   34 30
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   22 21
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   31 28
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   6 6
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   17 17
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   7 7
No Yes Mouse Gut Community lean1 (meta-genome)   1 1
No Yes Mouse Gut Community lean3 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   12831 11570
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   27 25
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   6 6
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   4 4
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   1 1
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   3 3
No Yes Sludge/US, Jazz Assembly (meta-genome)   2 2
No Yes Sludge/US, Phrap Assembly (meta-genome)   3 3
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   44 41
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   50 50
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   29 29
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   17 17
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   17 17
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   29 29
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   21 21
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   3 3
No Yes STRING v9.0.5 (STRING)   469 435
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   8 7
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   50 50
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   10 10
No Yes Uniprot 2018_03 genome   16752 13089
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   43 41
No Yes Global Ocean Sampling Expedition (GOS)   847 773
No Yes NCBI plasmid sequences (Plasmids)   22 22
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   16 16
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   48 48
No Yes TargetDB (Targets)   34 34

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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