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Pheromone-binding domain of LuxR-like quorum-sensing transcription factors superfamily domain assignments
in
Candidatus Nitrospira defluvii

Assignment details

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Candidatus Nitrospira defluvii has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|302035966|ref|YP_003796288.1|   0.0000000445   13-169   Pheromone-binding domain of LuxR-like quorum-sensing transcription factors  

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Select to display   Genome       Domains   Proteins
No Yes ALL   74333 74333
No Yes Caenorhabditis japonica   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Phytophthora capsici   1 1
No Yes Methylacidiphilum infernorum V4   1 1
No Yes Desulfurispirillum indicum S5   1 1
No Yes Candidatus Nitrospira defluvii   1 1
No Yes Leptospirillum ferrooxidans C2-3   1 1
No Yes Acidithiobacillus ferrivorans SS3   1 1
No Yes Acidithiobacillus ferrooxidans ATCC 53993   1 1
No Yes Desulfovibrio magneticus RS-1   1 1
No Yes Geobacter daltonii FRC-32   1 1
No Yes Geobacter uraniireducens Rf4   1 1
No Yes Geobacter metallireducens GS-15   1 1
No Yes Haliangium ochraceum DSM 14365   1 1
No Yes Azoarcus sp. KH32C   1 1
No Yes Aromatoleum aromaticum EbN1   1 1
No Yes Chromobacterium violaceum ATCC 12472   1 1
No Yes Methylibium petroleiphilum PM1   1 1
No Yes Thiomonas arsenitoxydans   1 1
No Yes Rubrivivax gelatinosus IL144   1 1
No Yes Leptothrix cholodnii SP-6   1 1
No Yes Burkholderia phytofirmans PsJN   3 3
No Yes Burkholderia phymatum STM815   1 1
No Yes Burkholderia xenovorans LB400   3 3
No Yes Cupriavidus taiwanensis LMG 19424   1 1
No Yes Cupriavidus necator N-1   1 1
No Yes Ralstonia solanacearum CFBP2957   1 1
No Yes Burkholderia sp. CCGE1002   2 2
No Yes Burkholderia thailandensis E264   10 10
No Yes Burkholderia pseudomallei 1106a   9 9
No Yes Burkholderia mallei SAVP1   4 4
No Yes Burkholderia ambifaria AMMD   6 6
No Yes Burkholderia cenocepacia HI2424   4 4
No Yes Burkholderia multivorans ATCC 17616   3 3
No Yes Burkholderia vietnamiensis G4   5 5
No Yes Burkholderia gladioli BSR3   7 7
No Yes Burkholderia glumae BGR1   8 8
No Yes Delftia sp. Cs1-4   1 1
No Yes Polaromonas sp. JS666   1 1
No Yes Variovorax paradoxus S110   1 1
No Yes Acidovorax citrulli AAC00-1   1 1
No Yes Acidovorax avenae subsp. avenae ATCC 19860   1 1
No Yes Comamonas testosteroni CNB-2   1 1
No Yes Collimonas fungivorans Ter331   2 2
No Yes Advenella kashmirensis WT001   1 1
No Yes Achromobacter xylosoxidans A8   1 1
No Yes Nitrosospira multiformis ATCC 25196   1 1
No Yes Sideroxydans lithotrophicus ES-1   1 1
No Yes Gallionella capsiferriformans ES-2   1 1
No Yes Asticcacaulis excentricus CB 48   2 2
No Yes Caulobacter sp. K31   1 1
No Yes Caulobacter segnis ATCC 21756   1 1
No Yes Phenylobacterium zucineum HLK1   1 1
No Yes Sphingopyxis alaskensis RB2256   3 3
No Yes Novosphingobium sp. PP1Y   3 3
No Yes Sphingobium sp. SYK-6   5 5
No Yes Sphingobium japonicum UT26S   3 3
No Yes Sphingobium chlorophenolicum L-1   3 3
No Yes Sphingomonas sp. MM-1   2 2
No Yes Sphingomonas wittichii RW1   4 4
No Yes Hirschia baltica ATCC 49814   2 2
No Yes Dinoroseobacter shibae DFL 12   6 6
No Yes Phaeobacter gallaeciensis 2.10   4 4
No Yes Pseudovibrio sp. FO-BEG1   2 2
No Yes Jannaschia sp. CCS1   4 4
No Yes Ruegeria sp. TM1040   4 4
No Yes Ruegeria pomeroyi DSS-3   5 5
No Yes Ketogulonicigenium vulgare Y25   1 1
No Yes Ketogulonigenium vulgarum WSH-001   1 1
No Yes Roseobacter litoralis Och 149   5 5
No Yes Roseobacter denitrificans OCh 114   2 2
No Yes Rhodobacter sphaeroides ATCC 17029   6 6
No Yes Rhodobacter capsulatus SB 1003   3 3
No Yes Paracoccus denitrificans PD1222   2 2
No Yes Rhodospirillum photometricum DSM 122   2 2
No Yes Tistrella mobilis KA081020-065   1 1
No Yes Rhodospirillum rubrum F11   3 3
No Yes Azospirillum sp. B510   1 1
No Yes Gluconacetobacter xylinus NBRC 3288   2 2
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Polymorphum gilvum SL003B-26A1   4 4
No Yes Micavibrio aeruginosavorus ARL-13   2 2
No Yes Xanthobacter autotrophicus Py2   1 1
No Yes Methylobacterium chloromethanicum CM4   1 1
No Yes Methylobacterium extorquens AM1   4 4
No Yes Methylobacterium sp. 4-46   1 1
No Yes Methylobacterium populi BJ001   1 1
No Yes Methylobacterium nodulans ORS 2060   4 4
No Yes Methylobacterium radiotolerans JCM 2831   3 3
No Yes Parvibaculum lavamentivorans DS-1   1 1
No Yes Ochrobactrum anthropi ATCC 49188   3 3
No Yes Brucella microti CCM 4915   2 2
No Yes Brucella pinnipedialis B2/94   2 2
No Yes Brucella canis ATCC 23365   2 2
No Yes Brucella suis ATCC 23445   2 2
No Yes Brucella melitensis ATCC 23457   2 2
No Yes Brucella ovis ATCC 25840   2 2
No Yes Brucella abortus S19   2 2
No Yes Sinorhizobium fredii NGR234   6 6
No Yes Sinorhizobium medicae WSM419   8 8
No Yes Sinorhizobium meliloti AK83   8 8
No Yes Genome sequence of Rhizobium sp. strain IRBG74   3 3
No Yes Rhizobium etli CIAT 652   7 7
No Yes Rhizobium leguminosarum bv. viciae 3841   8 8
No Yes Agrobacterium tumefaciens str. C58   4 4
No Yes Agrobacterium radiobacter K84   7 7
No Yes Agrobacterium sp. H13-3   4 4
No Yes Agrobacterium vitis S4   9 9
No Yes Mesorhizobium sp. BNC1   2 2
No Yes Mesorhizobium opportunistum WSM2075   6 6
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   6 6
No Yes Mesorhizobium loti MAFF303099   5 5
No Yes Methylocella silvestris BL2   3 3
No Yes Beijerinckia indica subsp. indica ATCC 9039   4 4
No Yes Pelagibacterium halotolerans B2   1 1
No Yes Rhodomicrobium vannielii ATCC 17100   1 1
No Yes Oligotropha carboxidovorans OM4   3 3
No Yes Rhodopseudomonas palustris BisA53   2 2
No Yes Nitrobacter winogradskyi Nb-255   1 1
No Yes Nitrobacter hamburgensis X14   3 3
No Yes Bradyrhizobium japonicum USDA 110   3 3
No Yes Bradyrhizobium sp. ORS 278   1 1
No Yes Methylocystis sp. SC2   1 1
No Yes Saccharophagus degradans 2-40   1 1
No Yes Cellvibrio japonicus Ueda107   1 1
No Yes Tolumonas auensis DSM 9187   1 1
No Yes Aeromonas veronii B565   2 2
No Yes Aeromonas salmonicida subsp. salmonicida A449   2 2
No Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966   3 3
No Yes Aliivibrio salmonicida LFI1238   2 2
No Yes Vibrio fischeri MJ11   1 1
No Yes Vibrio anguillarum 775   1 1
No Yes Vibrio furnissii NCTC 11218   1 1
No Yes Vibrio cholerae O395   1 1
No Yes Shewanella woodyi ATCC 51908   1 1
No Yes Shewanella violacea DSS12   1 1
No Yes Pseudoalteromonas atlantica T6c   1 1
No Yes Frateuria aurantia DSM 6220   1 1
No Yes Stenotrophomonas maltophilia K279a   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   1 1
No Yes Xanthomonas oryzae pv. oryzae PXO99A   1 1
No Yes Xanthomonas campestris pv. campestris str. B100   1 1
No Yes Halothiobacillus neapolitanus c2   1 1
No Yes Legionella longbeachae NSW150   1 1
No Yes Legionella pneumophila str. Corby   1 1
No Yes Photorhabdus asymbiotica   3 3
No Yes Photorhabdus luminescens subsp. laumondii TTO1   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Edwardsiella tarda EIB202   1 1
No Yes Rahnella sp. Y9602   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   2 2
No Yes Yersinia pseudotuberculosis IP 31758   2 2
No Yes Yersinia pestis Pestoides F   2 2
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   2 2
No Yes Serratia sp. AS12   3 3
No Yes Serratia sp. ATCC 39006   4 4
No Yes Serratia plymuthica AS9   3 3
No Yes Serratia proteamaculans 568   2 2
No Yes Dickeya dadantii Ech703   1 1
No Yes Dickeya zeae Ech1591   1 1
No Yes Pectobacterium wasabiae WPP163   2 2
No Yes Pectobacterium sp. SCC3193   2 2
No Yes Pectobacterium atrosepticum SCRI1043   2 2
No Yes Pectobacterium carotovorum subsp. carotovorum PC1   2 2
No Yes Sodalis glossinidius str. 'morsitans'   2 2
No Yes Pantoea sp. At-9b   5 5
No Yes Pantoea vagans C9-1   2 2
No Yes Pantoea ananatis LMG 20103   2 2
No Yes Erwinia tasmaniensis Et1/99   2 2
No Yes Erwinia sp. Ejp617   1 1
No Yes Erwinia billingiae Eb661   2 2
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Erwinia amylovora ATCC 49946   1 1
No Yes Escherichia blattae DSM 4481   1 1
No Yes Cronobacter turicensis z3032   1 1
No Yes Cronobacter sakazakii ES15   1 1
No Yes Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)   2 2
No Yes Enterobacteriaceae bacterium strain FGI 57   1 1
No Yes Shigella sonnei Ss046   1 1
No Yes Shigella flexneri 5 str. 8401   1 1
No Yes Shigella boydii CDC 3083-94   1 1
No Yes Salmonella bongori NCTC 12419   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594   1 1
No Yes Klebsiella oxytoca E718   2 2
No Yes Klebsiella variicola At-22   1 1
No Yes Klebsiella pneumoniae NTUH-K2044   1 1
No Yes Enterobacter aerogenes KCTC 2190   1 1
No Yes Escherichia fergusonii ATCC 35469   1 1
No Yes Escherichia coli 'BL21-Gold(DE3)pLysS AG'   1 1
No Yes Enterobacter sp. R4-368   2 2
No Yes Enterobacter sp. 638   1 1
No Yes Enterobacter asburiae LF7a   1 1
No Yes Enterobacter cloacae subsp. dissolvens SDM   1 1
No Yes Citrobacter rodentium ICC168   2 2
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Pseudomonas sp. TKP   5 5
No Yes Pseudomonas sp. UW4   2 2
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   3 3
No Yes Pseudomonas entomophila L48   2 2
No Yes Pseudomonas syringae pv. tomato str. DC3000   3 3
No Yes Pseudomonas putida F1   1 1
No Yes Pseudomonas protegens Pf-5   2 2
No Yes Pseudomonas fluorescens SBW25   3 3
No Yes Pseudomonas aeruginosa UCBPP-PA14   4 4
No Yes Pseudomonas sp. VLB120   3 3
No Yes Acinetobacter oleivorans DR1   1 1
No Yes Acinetobacter calcoaceticus PHEA-2   1 1
No Yes Acinetobacter baumannii ATCC 17978   1 1
No Yes Acinetobacter sp. ADP1   1 1
No Yes Acidithiobacillus ferrooxidans ATCC 23270   1 1
No Yes Desulfocapsa sulfexigens DSM 10523   1 1
No Yes Sorangium cellulosum So0157-2   1 1
No Yes Burkholderia phenoliruptrix BR3459a   2 2
No Yes Pandoraea pnomenusa 3kgm   3 3
No Yes Ralstonia pickettii 12J   1 1
No Yes Ralstonia solanacearum FQY_4   2 2
No Yes Ralstonia solanacearum Po82   1 1
No Yes Ralstonia solanacearum PSI07   2 2
No Yes Ralstonia solanacearum CMR15   2 2
No Yes Ralstonia solanacearum GMI1000   2 2
No Yes Burkholderia sp. CCGE1003   2 2
No Yes Burkholderia sp. CCGE1001   2 2
No Yes Burkholderia sp. KJ006   5 5
No Yes Burkholderia thailandensis MSMB121   8 8
No Yes Burkholderia pseudomallei MSHR305   9 9
No Yes Burkholderia pseudomallei NCTC 13179   9 9
No Yes Burkholderia pseudomallei BPC006   9 9
No Yes Burkholderia pseudomallei 1026b   9 9
No Yes Burkholderia pseudomallei MSHR346   1 1
No Yes Burkholderia pseudomallei 668   9 9
No Yes Burkholderia pseudomallei 1710b   9 9
No Yes Burkholderia pseudomallei K96243   9 9
No Yes Burkholderia mallei NCTC 10229   8 8
No Yes Burkholderia mallei NCTC 10247   7 7
No Yes Burkholderia mallei ATCC 23344   8 8
No Yes Burkholderia lata   3 3
No Yes Burkholderia ambifaria MC40-6   5 5
No Yes Burkholderia cenocepacia MC0-3   5 5
No Yes Burkholderia cenocepacia AU 1054   4 4
No Yes Burkholderia cenocepacia J2315   4 4
No Yes Burkholderia multivorans ATCC 17616   3 3
No Yes Burkholderia cepacia GG4   3 3
No Yes Variovorax paradoxus B4   2 2
No Yes Variovorax paradoxus EPS   2 2
No Yes Phaeobacter gallaeciensis DSM 17395   3 3
No Yes Phaeobacter gallaeciensis DSM 26640   4 4
No Yes Leisingera methylohalidivorans DSM 14336   3 3
No Yes Octadecabacter antarcticus 307   2 2
No Yes Octadecabacter arcticus 238   2 2
No Yes Rhodobacter sphaeroides KD131   6 6
No Yes Rhodobacter sphaeroides ATCC 17025   6 6
No Yes Rhodobacter sphaeroides 2.4.1   7 7
No Yes Paracoccus aminophilus JCM 7686   4 4
No Yes Magnetospirillum gryphiswaldense MSR-1 v2   3 3
No Yes Rhodospirillum rubrum ATCC 11170   3 3
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Micavibrio aeruginosavorus EPB   1 1
No Yes Methylobacterium extorquens DM4   1 1
No Yes Methylobacterium extorquens PA1   1 1
No Yes Brucella ceti TE10759-12   2 2
No Yes Brucella ceti TE28753-12   2 2
No Yes Brucella canis HSK A52141   2 2
No Yes Brucella suis VBI22   2 2
No Yes Brucella suis 1330   2 2
No Yes Brucella suis 1330   2 2
No Yes Brucella melitensis NI   2 2
No Yes Brucella melitensis M5-90   2 2
No Yes Brucella melitensis M28   2 2
No Yes Brucella melitensis bv. 1 str. 16M   2 2
No Yes Brucella abortus A13334   2 2
No Yes Brucella melitensis biovar Abortus 2308   2 2
No Yes Brucella abortus bv. 1 str. 9-941   2 2
No Yes Sinorhizobium fredii USDA 257   7 7
No Yes Sinorhizobium fredii HH103   7 7
No Yes Sinorhizobium meliloti 2011   8 8
No Yes Sinorhizobium meliloti GR4   6 6
No Yes Sinorhizobium meliloti Rm41   10 10
No Yes Sinorhizobium meliloti SM11   8 8
No Yes Sinorhizobium meliloti BL225C   9 9
No Yes Sinorhizobium meliloti 1021   8 8
No Yes Rhizobium etli CFN 42   9 9
No Yes Rhizobium etli bv. mimosae str. Mim1   9 9
No Yes Rhizobium tropici CIAT 899   7 7
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   7 7
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   7 7
No Yes Mesorhizobium australicum WSM2073   7 7
No Yes Hyphomicrobium denitrificans 1NES1   2 2
No Yes Oligotropha carboxidovorans OM5   3 3
No Yes Oligotropha carboxidovorans OM5   3 3
No Yes Rhodopseudomonas palustris DX-1   3 3
No Yes Rhodopseudomonas palustris TIE-1   2 2
No Yes Rhodopseudomonas palustris HaA2   2 2
No Yes Rhodopseudomonas palustris BisB5   2 2
No Yes Rhodopseudomonas palustris BisB18   3 3
No Yes Rhodopseudomonas palustris CGA009   1 1
No Yes Bradyrhizobium sp. S23321   1 1
No Yes Bradyrhizobium sp. BTAi1   4 4
No Yes Bradyrhizobium oligotrophicum S58   4 4
No Yes Bradyrhizobium japonicum USDA 6   2 2
No Yes Aeromonas hydrophila ML09-119   3 3
No Yes Vibrio fischeri ES114   1 1
No Yes Vibrio anguillarum Listonella anguillarum M3   1 1
No Yes Vibrio cholerae LMA3984-4   1 1
No Yes Vibrio cholerae M66-2   1 1
No Yes Vibrio cholerae O395   1 1
No Yes Vibrio cholerae IEC224   1 1
No Yes Vibrio cholerae O1 str. 2010EL-1786   1 1
No Yes Vibrio cholerae MJ-1236   1 1
No Yes Vibrio cholerae O1 biovar El Tor str. N16961   1 1
No Yes Alcanivorax dieselolei B5   2 2
No Yes Stenotrophomonas maltophilia D457   1 1
No Yes Stenotrophomonas maltophilia JV3   1 1
No Yes Stenotrophomonas maltophilia R551-3   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   1 1
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   1 1
No Yes Xanthomonas axonopodis pv. citrumelo F1   1 1
No Yes Xanthomonas axonopodis Xac29-1   1 1
No Yes Xanthomonas oryzae pv. oryzicola BLS256   1 1
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   1 1
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   1 1
No Yes Xanthomonas campestris pv. raphani 756C   1 1
No Yes Xanthomonas campestris pv. campestris str. 8004   1 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   1 1
No Yes Legionella pneumophila str. Paris   1 1
No Yes Legionella pneumophila subsp. pneumophila LPE509   1 1
No Yes Legionella pneumophila subsp. pneumophila str. Thunder Bay   1 1
No Yes Legionella pneumophila subsp. pneumophila str. Philadelphia 1   1 1
No Yes Legionella pneumophila subsp. pneumophila   1 1
No Yes Legionella pneumophila subsp. pneumophila   1 1
No Yes Legionella pneumophila subsp. pneumophila ATCC 43290   1 1
No Yes Legionella pneumophila 2300/99 Alcoy   1 1
No Yes Edwardsiella tarda C07-087   1 1
No Yes Edwardsiella tarda FL6-60   1 1
No Yes Rahnella aquatilis HX2   1 1
No Yes Yersinia pseudotuberculosis PB1/+   2 2
No Yes Yersinia pseudotuberculosis YPIII   2 2
No Yes Yersinia pseudotuberculosis IP 32953   2 2
No Yes Yersinia pestis biovar Microtus str. 91001   2 2
No Yes Yersinia pestis A1122   2 2
No Yes Yersinia pestis Z176003   2 2
No Yes Yersinia pestis D182038   2 2
No Yes Yersinia pestis D106004   2 2
No Yes Yersinia pestis biovar Medievalis str. Harbin 35   2 2
No Yes Yersinia pestis Nepal516   2 2
No Yes Yersinia pestis Antiqua   2 2
No Yes Yersinia pestis Angola   2 2
No Yes Yersinia pestis CO92   2 2
No Yes Yersinia pestis KIM10+   2 2
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   1 1
No Yes Yersinia enterocolitica subsp. palearctica Y11   1 1
No Yes Serratia sp. AS13   3 3
No Yes Serratia plymuthica S13   4 4
No Yes Serratia plymuthica 4Rx13   3 3
No Yes Serratia marcescens FGI94   1 1
No Yes Serratia marcescens WW4   4 4
No Yes Serratia liquefaciens ATCC 27592   2 2
No Yes Dickeya dadantii Ech586   2 2
No Yes Dickeya dadantii 3937   2 2
No Yes Pectobacterium carotovorum subsp. carotovorum PCC21   2 2
No Yes Pantoea ananatis LMG 5342   2 2
No Yes Pantoea ananatis PA13   2 2
No Yes Pantoea ananatis AJ13355   2 2
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Erwinia amylovora CFBP1430   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Cronobacter sakazakii SP291   1 1
No Yes Cronobacter sakazakii ATCC BAA-894   1 1
No Yes Raoultella ornithinolytica B6   1 1
No Yes Shigella sonnei 53G   1 1
No Yes Shigella flexneri 2002017   1 1
No Yes Shigella flexneri 2a str. 2457T   1 1
No Yes Shigella flexneri 2a str. 301   1 1
No Yes Shigella dysenteriae 1617   1 1
No Yes Shigella boydii Sb227   1 1
No Yes Salmonella bongori N268-08   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736   1 1
No Yes Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   1 1
No Yes Salmonella enterica subsp. enterica serovar Enteritidis str. P125109   1 1
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   1 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1   1 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. SL254   1 1
No Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   1 1
No Yes Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty21a   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty2   1 1
No Yes Salmonella enterica serovar Bovismorbificans genomics   1 1
No Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189   2 2
No Yes Salmonella enterica subsp. enterica serovar Agona str. 24249   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. SL483   1 1
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150   1 1
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. B182   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476   1 1
No Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078   1 1
No Yes Salmonella enterica subsp. enterica serovar Thompson str. RM6836   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91   1 1
No Yes Klebsiella oxytoca KCTC 1686   2 2
No Yes Klebsiella pneumoniae JM45   1 1
No Yes Klebsiella pneumoniae CG43   1 1
No Yes Klebsiella pneumoniae KCTC 2242   1 1
No Yes Klebsiella pneumoniae 342   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   1 1
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   1 1
No Yes Enterobacter aerogenes EA1509E   1 1
No Yes Escherichia coli E24377A   1 1
No Yes Escherichia coli E. coli PMV-1   1 1
No Yes Escherichia coli JJ1886   1 1
No Yes Escherichia coli LY180   1 1
No Yes Escherichia coli APEC O78   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli O104:H4 str. 2009EL-2050   1 1
No Yes Escherichia coli O104:H4 str. 2009EL-2071   1 1
No Yes Escherichia coli O104:H4 str. 2011C-3493   1 1
No Yes Escherichia coli NA114   1 1
No Yes Escherichia coli P12b   1 1
No Yes Escherichia coli str. 'clone D i2'   1 1
No Yes Escherichia coli str. 'clone D i14'   1 1
No Yes Escherichia coli UM146   1 1
No Yes Escherichia coli 042   1 1
No Yes Escherichia coli Xuzhou21   1 1
No Yes Escherichia coli IHE3034   1 1
No Yes Escherichia coli UMNK88   1 1
No Yes Escherichia coli O83:H1 str. NRG 857C   1 1
No Yes Escherichia coli ABU 83972   1 1
No Yes Escherichia coli KO11FL   1 1
No Yes Escherichia coli KO11FL   1 1
No Yes Escherichia coli LF82   1 1
No Yes Escherichia coli ED1a   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Escherichia coli UMN026   1 1
No Yes Escherichia coli 55989   1 1
No Yes Escherichia coli S88   1 1
No Yes Escherichia coli IAI1   1 1
No Yes Escherichia coli W   1 1
No Yes Escherichia coli W   1 1
No Yes Escherichia coli DH1   1 1
No Yes Escherichia coli DH1   1 1
No Yes Escherichia coli ATCC 8739   1 1
No Yes Escherichia coli SMS-3-5   1 1
No Yes Escherichia coli SE15   1 1
No Yes Escherichia coli SE11   1 1
No Yes Escherichia coli APEC O1   1 1
No Yes Escherichia coli O103:H2 str. 12009   1 1
No Yes Escherichia coli UTI89   1 1
No Yes Escherichia coli HS   1 1
No Yes Escherichia coli ETEC H10407   1 1
No Yes Escherichia coli O55:H7 str. RM12579   1 1
No Yes Escherichia coli O55:H7 str. CB9615   1 1
No Yes Escherichia coli O26:H11 str. 11368   1 1
No Yes Escherichia coli CFT073   1 1
No Yes Escherichia coli O111:H- str. 11128   1 1
No Yes Escherichia coli O127:H6 str. E2348/69   1 1
No Yes Escherichia coli O157:H7 str. TW14359   1 1
No Yes Escherichia coli O157:H7 str. EC4115   1 1
No Yes Escherichia coli O157:H7 str. Sakai   1 1
No Yes Escherichia coli O157:H7 str. EDL933   1 1
No Yes Escherichia coli str. K-12 substr. MDS42   1 1
No Yes Escherichia coli BW2952   1 1
No Yes Escherichia coli str. K-12 substr. MG1655   1 1
No Yes Escherichia coli str. K-12 substr. W3110   1 1
No Yes Escherichia coli str. K-12 substr. DH10B   1 1
No Yes Enterobacter cloacae SCF1   2 2
No Yes Enterobacter cloacae EcWSU1   1 1
No Yes Enterobacter cloacae subsp. cloacae ENHKU01   1 1
No Yes Enterobacter cloacae subsp. cloacae NCTC 9394   1 1
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   1 1
No Yes Pseudomonas syringae pv. phaseolicola 1448A   3 3
No Yes Pseudomonas syringae pv. syringae B728a   3 3
No Yes Pseudomonas monteilii SB3101   2 2
No Yes Pseudomonas monteilii SB3078   2 2
No Yes Pseudomonas putida H8234   2 2
No Yes Pseudomonas putida HB3267   1 1
No Yes Pseudomonas putida NBRC 14164   1 1
No Yes Pseudomonas putida DOT-T1E   1 1
No Yes Pseudomonas putida S16   2 2
No Yes Pseudomonas putida BIRD-1   1 1
No Yes Pseudomonas putida W619   1 1
No Yes Pseudomonas putida ND6   1 1
No Yes Pseudomonas putida KT2440   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Pseudomonas protegens CHA0   2 2
No Yes Pseudomonas poae RE*1-1-14   2 2
No Yes Pseudomonas fluorescens F113   3 3
No Yes Pseudomonas fluorescens A506   6 6
No Yes Pseudomonas fluorescens R124   1 1
No Yes Pseudomonas fluorescens Pf0-1   2 2
No Yes Pseudomonas aeruginosa SCV20265   3 3
No Yes Pseudomonas aeruginosa MTB-1   4 4
No Yes Pseudomonas aeruginosa LES431   4 4
No Yes Pseudomonas aeruginosa RP73   3 3
No Yes Pseudomonas aeruginosa B136-33   4 4
No Yes Pseudomonas aeruginosa PA1R   3 3
No Yes Pseudomonas aeruginosa PA1   3 3
No Yes Pseudomonas aeruginosa DK2   3 3
No Yes Pseudomonas aeruginosa NCGM2.S1   4 4
No Yes Pseudomonas aeruginosa M18   4 4
No Yes Pseudomonas aeruginosa LESB58   4 4
No Yes Pseudomonas aeruginosa PA7   3 3
No Yes Pseudomonas aeruginosa PAO1   4 4
No Yes Acinetobacter genomosp. 13TU RUH2624   1 1
No Yes Acinetobacter sp. SH024   1 1
No Yes Acinetobacter calcoaceticus ruh2202   1 1
No Yes Acinetobacter baumannii ZW85-1   1 1
No Yes Acinetobacter baumannii TYTH-1   1 1
No Yes Acinetobacter baumannii BJAB0868   1 1
No Yes Acinetobacter baumannii BJAB0715   1 1
No Yes Acinetobacter baumannii BJAB07104   1 1
No Yes Acinetobacter baumannii TCDC-AB0715   1 1
No Yes Acinetobacter baumannii D1279779   1 1
No Yes Acinetobacter baumannii MDR-TJ   1 1
No Yes Acinetobacter baumannii 1656-2   1 1
No Yes Acinetobacter baumannii ATCC 19606   1 1
No Yes Acinetobacter baumannii AB307-0294   1 1
No Yes Acinetobacter baumannii AYE   1 1
No Yes Acinetobacter baumannii MDR-ZJ06   1 1
No Yes Acinetobacter baumannii AB0057   1 1
No Yes Acinetobacter baumannii ACICU   1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes 2_050719S (meta-genome)   2 2
No Yes 4_050719Q (meta-genome)   1 1
No Yes 4_Deep_abyss (meta-genome)   1 1
No Yes 5_050719P (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   3 3
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   9 9
No Yes Combined (meta-genome)   27 27
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   22 22
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   8 8
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   8 8
No Yes Dump bottom (Dump bottom) (meta-genome)   11 11
No Yes Dump top (Dump top) (meta-genome)   18 18
No Yes Endophytic microbiome from Rice (meta-genome)   7 7
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   2 2
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   5 5
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   12 12
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   19 19
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   26 26
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   2 2
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   2 2
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   9 9
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   3 3
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   3 3
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   3 3
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   12 12
No Yes NCBI 2017_08 genome   61059 61055
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   12 12
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   20 20
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   11 11
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   20 20
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   2 2
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   6 6
No Yes STRING v9.0.5 (STRING)   554 554
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   15 15
No Yes Uniprot 2018_03 genome   10223 10220
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   4 4
No Yes Global Ocean Sampling Expedition (GOS)   59 59
No Yes NCBI plasmid sequences (Plasmids)   126 126
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   125 125
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   133 133
No Yes TargetDB (Targets)   24 24
No Yes The Salmonella enterica Pan-genome (meta-genome)   30 30

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