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Noncollagenous (NC1) domain of collagen IV family domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   13255 13255
No Yes Homo sapiens 76_38 Human 24 12
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 13 7
No Yes Gorilla gorilla 76_3.1 Western gorilla 22 11
No Yes Pongo abelii 76_2 Sumatran orangutan 18 9
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 10 5
No Yes Papio anubis 76 Olive baboon 12 6
No Yes Macaca mulatta 76_1 Rhesus monkey 21 11
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 26 13
No Yes Otolemur garnettii 76_3 Small-eared galago 12 6
No Yes Microcebus murinus 76_1 Gray mouse lemur 10 6
No Yes Rattus norvegicus 76_5.0 Norway rat 10 5
No Yes Mus musculus 76_38 House mouse 17 9
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 12 6
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 12 6
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 10 5
No Yes Cavia porcellus 76_3 Domestic guinea pig 12 6
No Yes Oryctolagus cuniculus 76_2 Rabbit 17 9
No Yes Ochotona princeps 76 American pika 7 5
No Yes Tupaia belangeri 76 Northern tree shrew 10 6
No Yes Sus scrofa 76_10.2 Pig 10 5
No Yes Bos taurus 76_3.1 Cattle 12 6
No Yes Ovis aries 76_3.1 Sheep 14 7
No Yes Vicugna pacos 76_1 Alpaca 8 4
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 12 6
No Yes Mustela putorius furo 76_1.0 Domestic ferret 12 6
No Yes Ailuropoda melanoleuca 76_1 Giant panda 16 8
No Yes Canis familiaris 76_3.1 Dog 23 12
No Yes Felis catus 76_6.2 Domestic cat 14 7
No Yes Equus caballus 76_2 Horse 18 9
No Yes Myotis lucifugus 76_2.0 Little brown bat 14 7
No Yes Pteropus vampyrus 76_1 Large flying fox 11 6
No Yes Sorex araneus 76_1 European shrew 8 4
No Yes Erinaceus europaeus 76 Western European hedgehog 8 4
No Yes Procavia capensis 76_1 Cape rock hyrax 8 6
No Yes Loxodonta africana 76_3 African savanna elephant 16 8
No Yes Echinops telfairi 76 Small Madagascar hedgehog 10 6
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 14 7
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 7 4
No Yes Macropus eugenii 76_1.0 Tammar wallaby 10 5
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 15 8
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 10 5
No Yes Ornithorhynchus anatinus 76_5 Platypus 14 8
No Yes Saccoglossus kowalevskii v3.0   6 3
No Yes Petromyzon marinus 76_7.0 Sea lamprey 11 6
No Yes Meleagris gallopavo 76_2 Turkey 12 6
No Yes Gallus gallus 76_4 Chicken 11 6
No Yes Anas platyrhynchos 76_1.0 Mallard 12 6
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 14 7
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 12 6
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 14 7
No Yes Anolis carolinensis 76_2.0 Green anole 12 6
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 8 4
No Yes Latimeria chalumnae 76_1 Coelacanth 9 5
No Yes Lepisosteus oculatus 76 Spotted gar 13 7
No Yes Gadus morhua 76_1 Atlantic cod 15 8
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 18 9
No Yes Takifugu rubripes 76_4 Torafugu 116 61
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 19 10
No Yes Oryzias latipes 76_1 Japanese medaka 10 5
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 16 8
No Yes Poecilia formosa 76 Amazon molly 14 7
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 22 11
No Yes Astyanax mexicanus 76 Mexican tetra 15 8
No Yes Danio rerio 76_9 Zebrafish 22 11
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 38 19
No Yes Ciona intestinalis 76 Vase tunicate 6 3
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 3 2
No Yes Adineta vaga   15 8
No Yes Octopus bimaculoides 280   6 3
No Yes Crassostrea gigas 22 Pacific oyster 10 6
No Yes Lottia gigantea Owl limpet 8 4
No Yes Helobdella robusta   6 3
No Yes Capitella sp. I   7 4
No Yes Danaus plexippus OGS1.0 Monarch butterfly 4 2
No Yes Heliconius melpomene Postman butterfly 4 2
No Yes Bombyx mori Domestic silkworm 2 1
No Yes Nasonia vitripennis Jewel wasp 2 1
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 38 19
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 4 2
No Yes Linepithema humile v1.1 Argentine ant 4 2
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 4 2
No Yes Solenopsis invicta v.2.2.3 Red fire ant 4 2
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 4 2
No Yes Atta cephalotes v1.1   4 2
No Yes Camponotus floridanus v3.3 Florida carpenter ant 4 2
No Yes Drosophila grimshawi 1.3   4 2
No Yes Drosophila willistoni 1.3   4 2
No Yes Drosophila pseudoobscura 2.13   4 2
No Yes Drosophila persimilis 1.3   3 2
No Yes Drosophila suzukii   4 2
No Yes Drosophila yakuba 1.3   4 2
No Yes Drosophila simulans 1.3   3 2
No Yes Drosophila sechellia 1.3   4 2
No Yes Drosophila melanogaster 76_5 Fruit fly 12 6
No Yes Drosophila erecta 1.3   4 2
No Yes Drosophila ananassae 1.3   4 2
No Yes Drosophila virilis 1.2   4 2
No Yes Drosophila mojavensis 1.3   4 2
No Yes Megaselia scalaris 22   3 2
No Yes Culex pipiens quinquefasciatus Southern house mosquito 4 2
No Yes Anopheles darlingi 22 American malaria mosquito 4 2
No Yes Anopheles gambiae 49_3j African malaria mosquito 4 2
No Yes Tribolium castaneum 3.0 Red flour beetle 4 2
No Yes Pediculus humanus corporis (Early assembly) Human body louse 4 2
No Yes Acyrthosiphon pisum Pea aphid 4 2
No Yes Rhodnius prolixus 22   4 2
No Yes Daphnia pulex Common water flea 4 2
No Yes Strigamia maritima 22   10 5
No Yes Sarcoptes scabiei   4 2
No Yes Tetranychus urticae Two-spotted spider mite 4 2
No Yes Ixodes scapularis (Preliminary) Black-legged tick 4 2
No Yes Pristionchus pacificus   2 1
No Yes Meloidogyne incognita Southern root-knot nematode 6 3
No Yes Meloidogyne hapla   2 1
No Yes Onchocerca volvulus 22   4 2
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 6 3
No Yes Caenorhabditis japonica   3 2
No Yes Caenorhabditis brenneri   4 2
No Yes Caenorhabditis remanei   4 2
No Yes Caenorhabditis elegans 76_235 Roundworm 12 6
No Yes Caenorhabditis briggsae 2   4 2
No Yes Trichinella spiralis 22   4 2
No Yes Hymenolepis microstoma   4 3
No Yes Echinococcus multilocularis   8 6
No Yes Echinococcus granulosus   4 3
No Yes Taenia solium Pork tapeworm 3 2
No Yes Schistosoma mansoni   4 3
No Yes Mnemiopsis leidyi Sea walnut 2 2
No Yes Acropora digitifera v1.0   2 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 4 2
No Yes Hydra vulgaris   5 3
No Yes Trichoplax adhaerens   4 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 8 4
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 8 4
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 4 2
No Yes Ascaris suum Victoria/Ghent Pig roundworm 3 2
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 8 4
No Yes Homo sapiens 75_37 (old version GRC) Human 26 13
No Yes Homo sapiens (NCBI version) Human 16 8
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 12 6
No Yes Heliconius numata (Incomplete)   4 3
No Yes Loa loa v3.3 (Request) Eye worm 4 2
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 4 3
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 4 2
No Yes Homo sapiens 69_37 Human 14 7
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 11 6
No Yes Gorilla gorilla 69_3.1 Western gorilla 12 6
No Yes Pongo abelii 69_2 Sumatran orangutan 12 6
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 8 4
No Yes Macaca mulatta 69_1 Rhesus monkey 10 5
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 12 6
No Yes Otolemur garnettii 69_3 Small-eared galago 12 6
No Yes Microcebus murinus 69_1 Gray mouse lemur 10 6
No Yes Rattus norvegicus 69_3.4 Norway rat 12 7
No Yes Mus musculus 69_38 House mouse 12 6
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 12 6
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 12 6
No Yes Cavia porcellus 69_3 Domestic guinea pig 12 6
No Yes Oryctolagus cuniculus 69_2 Rabbit 13 7
No Yes Ochotona princeps 69 American pika 7 5
No Yes Tupaia belangeri 69 Northern tree shrew 10 6
No Yes Sus scrofa 69_10.2 Pig 10 5
No Yes Bos taurus 69_3.1 Cattle 12 6
No Yes Vicugna pacos 69_1 Alpaca 8 4
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 12 6
No Yes Mustela putorius furo 69_1.0 Domestic ferret 12 6
No Yes Ailuropoda melanoleuca 69_1 Giant panda 12 6
No Yes Canis familiaris 69_3.1 Dog 12 6
No Yes Felis catus 69 Domestic cat 11 6
No Yes Equus caballus 69_2 Horse 12 6
No Yes Myotis lucifugus 69_2.0 Little brown bat 14 7
No Yes Pteropus vampyrus 69_1 Large flying fox 11 6
No Yes Sorex araneus 69_1 European shrew 8 4
No Yes Erinaceus europaeus 69 Western European hedgehog 8 4
No Yes Procavia capensis 69_1 Cape rock hyrax 8 6
No Yes Loxodonta africana 69_3 African savanna elephant 12 6
No Yes Echinops telfairi 69 Small Madagascar hedgehog 10 6
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 11 6
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 7 4
No Yes Macropus eugenii 69_1.0 Tammar wallaby 10 5
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 8 4
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 10 5
No Yes Ornithorhynchus anatinus 69_5 Platypus 12 7
No Yes Petromyzon marinus 69_7.0 Sea lamprey 5 3
No Yes Meleagris gallopavo 69_2 Turkey 10 5
No Yes Gallus gallus 69_2 Chicken 12 6
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 14 7
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 12 6
No Yes Anolis carolinensis 69_2.0 Green anole 12 6
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 8 4
No Yes Latimeria chalumnae 69_1 Coelacanth 9 5
No Yes Gadus morhua 69_1 Atlantic cod 15 8
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 10 5
No Yes Takifugu rubripes 69_4 Torafugu 21 11
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 15 8
No Yes Oryzias latipes 69_1 Japanese medaka 8 4
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 16 8
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 16 8
No Yes Danio rerio 69_9 Zebrafish 12 6
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 4 2
No Yes Ciona intestinalis 69 Vase tunicate 4 2
No Yes Drosophila melanogaster 69_5 Fruit fly 4 2
No Yes Caenorhabditis elegans 69_215 Roundworm 4 2
No Yes NCBI 2017_08 genome   5357 2722
No Yes STRING v9.0.5 (STRING)   402 208
No Yes Uniprot 2018_03 genome   3768 1991
No Yes PDB chains (SCOP 1.75) (PDB)   8 4
No Yes Protein Data Bank (all PDB sequenc)   154 77
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   288 240

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