SUPERFAMILY 1.75 HMM library and genome assignments server

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FAS1 domain superfamily domain assignments
in
Clostridium perfringens ATCC 13124


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Select to display   Genome       Domains   Proteins
No Yes ALL   101796 101796
No Yes Homo sapiens 76_38 Human 52 15
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 22 4
No Yes Gorilla gorilla 76_3.1 Western gorilla 33 6
No Yes Pongo abelii 76_2 Sumatran orangutan 22 4
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 21 4
No Yes Papio anubis 76 Olive baboon 22 4
No Yes Macaca mulatta 76_1 Rhesus monkey 43 10
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 41 9
No Yes Otolemur garnettii 76_3 Small-eared galago 22 4
No Yes Microcebus murinus 76_1 Gray mouse lemur 21 4
No Yes Rattus norvegicus 76_5.0 Norway rat 22 4
No Yes Mus musculus 76_38 House mouse 37 9
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 19 4
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 22 4
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 23 4
No Yes Cavia porcellus 76_3 Domestic guinea pig 21 4
No Yes Oryctolagus cuniculus 76_2 Rabbit 22 4
No Yes Ochotona princeps 76 American pika 22 4
No Yes Tupaia belangeri 76 Northern tree shrew 12 3
No Yes Sus scrofa 76_10.2 Pig 23 5
No Yes Bos taurus 76_3.1 Cattle 26 5
No Yes Ovis aries 76_3.1 Sheep 27 7
No Yes Vicugna pacos 76_1 Alpaca 13 3
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 22 4
No Yes Mustela putorius furo 76_1.0 Domestic ferret 22 4
No Yes Ailuropoda melanoleuca 76_1 Giant panda 27 6
No Yes Canis familiaris 76_3.1 Dog 31 7
No Yes Felis catus 76_6.2 Domestic cat 22 4
No Yes Equus caballus 76_2 Horse 26 5
No Yes Myotis lucifugus 76_2.0 Little brown bat 22 4
No Yes Pteropus vampyrus 76_1 Large flying fox 22 4
No Yes Sorex araneus 76_1 European shrew 16 4
No Yes Erinaceus europaeus 76 Western European hedgehog 13 3
No Yes Procavia capensis 76_1 Cape rock hyrax 21 4
No Yes Loxodonta africana 76_3 African savanna elephant 21 5
No Yes Echinops telfairi 76 Small Madagascar hedgehog 14 4
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 29 6
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 17 4
No Yes Macropus eugenii 76_1.0 Tammar wallaby 23 4
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 21 5
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 22 4
No Yes Ornithorhynchus anatinus 76_5 Platypus 22 4
No Yes Saccoglossus kowalevskii v3.0   13 6
No Yes Petromyzon marinus 76_7.0 Sea lamprey 8 3
No Yes Meleagris gallopavo 76_2 Turkey 21 4
No Yes Gallus gallus 76_4 Chicken 25 5
No Yes Anas platyrhynchos 76_1.0 Mallard 22 4
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 30 7
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 26 5
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 27 7
No Yes Anolis carolinensis 76_2.0 Green anole 22 4
No Yes Xenopus laevis African clawed frog 8 2
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 15 3
No Yes Latimeria chalumnae 76_1 Coelacanth 21 4
No Yes Lepisosteus oculatus 76 Spotted gar 21 4
No Yes Gadus morhua 76_1 Atlantic cod 17 5
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 34 10
No Yes Takifugu rubripes 76_4 Torafugu 53 11
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 30 8
No Yes Oryzias latipes 76_1 Japanese medaka 30 6
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 19 4
No Yes Poecilia formosa 76 Amazon molly 19 4
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 41 8
No Yes Astyanax mexicanus 76 Mexican tetra 26 5
No Yes Danio rerio 76_9 Zebrafish 53 11
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 12 2
No Yes Ciona intestinalis 76 Vase tunicate 7 3
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 28 12
No Yes Adineta vaga   8 5
No Yes Octopus bimaculoides 280   27 14
No Yes Crassostrea gigas 22 Pacific oyster 53 21
No Yes Lottia gigantea Owl limpet 29 9
No Yes Helobdella robusta   3 1
No Yes Capitella sp. I   7 2
No Yes Danaus plexippus OGS1.0 Monarch butterfly 6 2
No Yes Heliconius melpomene Postman butterfly 6 2
No Yes Bombyx mori Domestic silkworm 6 3
No Yes Nasonia vitripennis Jewel wasp 6 2
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 16 9
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 3 2
No Yes Linepithema humile v1.1 Argentine ant 5 3
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 7 5
No Yes Solenopsis invicta v.2.2.3 Red fire ant 6 4
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 5 4
No Yes Atta cephalotes v1.1   7 5
No Yes Camponotus floridanus v3.3 Florida carpenter ant 5 3
No Yes Lucilia cuprina Australian sheep blowfly 10 4
No Yes Drosophila grimshawi 1.3   16 5
No Yes Drosophila willistoni 1.3   12 4
No Yes Drosophila pseudoobscura 2.13   12 4
No Yes Drosophila persimilis 1.3   6 2
No Yes Drosophila suzukii   12 4
No Yes Drosophila yakuba 1.3   12 4
No Yes Drosophila simulans 1.3   10 4
No Yes Drosophila sechellia 1.3   11 5
No Yes Drosophila melanogaster 76_5 Fruit fly 100 27
No Yes Drosophila erecta 1.3   12 4
No Yes Drosophila ananassae 1.3   12 4
No Yes Drosophila virilis 1.2   12 4
No Yes Drosophila mojavensis 1.3   12 4
No Yes Megaselia scalaris 22   4 2
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 16 6
No Yes Culex pipiens quinquefasciatus Southern house mosquito 10 4
No Yes Anopheles darlingi 22 American malaria mosquito 6 3
No Yes Anopheles gambiae 49_3j African malaria mosquito 12 4
No Yes Tribolium castaneum 3.0 Red flour beetle 16 6
No Yes Pediculus humanus corporis (Early assembly) Human body louse 9 3
No Yes Acyrthosiphon pisum Pea aphid 6 2
No Yes Rhodnius prolixus 22   18 7
No Yes Daphnia pulex Common water flea 69 34
No Yes Strigamia maritima 22   18 6
No Yes Sarcoptes scabiei   8 4
No Yes Tetranychus urticae Two-spotted spider mite 21 6
No Yes Ixodes scapularis (Preliminary) Black-legged tick 15 8
No Yes Pristionchus pacificus   7 3
No Yes Meloidogyne incognita Southern root-knot nematode 5 2
No Yes Onchocerca volvulus 22   5 2
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 8 3
No Yes Caenorhabditis japonica   3 1
No Yes Caenorhabditis brenneri   6 2
No Yes Caenorhabditis remanei   3 1
No Yes Caenorhabditis elegans 76_235 Roundworm 5 2
No Yes Caenorhabditis briggsae 2   3 1
No Yes Trichinella spiralis 22   7 2
No Yes Hymenolepis microstoma   10 4
No Yes Echinococcus multilocularis   8 3
No Yes Echinococcus granulosus   9 3
No Yes Taenia solium Pork tapeworm 9 3
No Yes Schistosoma mansoni   9 3
No Yes Acropora digitifera v1.0   14 6
No Yes Nematostella vectensis 1.0 Starlet sea anemone 19 6
No Yes Hydra vulgaris   9 5
No Yes Amphimedon queenslandica   10 5
No Yes Proterospongia sp. ATCC 50818   18 8
No Yes Monosiga brevicollis   28 10
No Yes Sphaeroforma arctica JP610   15 9
No Yes Capsaspora owczarzaki ATCC 30864   10 1
No Yes Conidiobolus coronatus NRRL28638 v1.0   8 3
No Yes Mortierella verticillata NRRL 6337   7 2
No Yes Phycomyces blakesleeanus   16 5
No Yes Rhizopus oryzae RA 99-880   33 11
No Yes Mucor circinelloides   25 9
No Yes Rhizomucor miehei CAU432   18 6
No Yes Malassezia globosa CBS 7966   8 2
No Yes Sporisorium reilianum 22   11 4
No Yes Ustilago maydis   11 4
No Yes Mixia osmundae IAM 14324 v1.0   15 7
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   11 5
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   9 3
No Yes Melampsora laricis-populina   10 4
No Yes Rhodotorula graminis WP1 v1.0   7 2
No Yes Sporobolomyces roseus IAM 13481   7 2
No Yes Microbotryum violaceum 22   7 3
No Yes Wallemia sebi v1.0   10 4
No Yes Sphaerobolus stellatus v1.0   4 3
No Yes Piloderma croceum F 1598 v1.0   11 5
No Yes Serpula lacrymans var. lacrymans S7.9   10 4
No Yes Coniophora puteana   10 4
No Yes Hydnomerulius pinastri v2.0   13 7
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   10 4
No Yes Pisolithus microcarpus 441 v1.0   8 3
No Yes Pisolithus tinctorius Marx 270 v1.0   9 4
No Yes Scleroderma citrinum Foug A v1.0   8 3
No Yes Coprinopsis cinerea okayama7 130 v3   18 8
No Yes Pleurotus ostreatus Oyster mushroom 12 6
No Yes Amanita thiersii Skay4041 v1.0   10 4
No Yes Amanita muscaria Koide v1.0 Fly agaric 8 3
No Yes Galerina marginata v1.0   12 5
No Yes Hebeloma cylindrosporum h7 v2.0   10 4
No Yes Laccaria bicolor S238N-H82   10 4
No Yes Agaricus bisporus var. bisporus   10 4
No Yes Schizophyllum commune   9 4
No Yes Stereum hirsutum FP-91666 SS1 v1.0   10 4
No Yes Heterobasidion annosum   7 3
No Yes Gloeophyllum trabeumv1.0   10 5
No Yes Punctularia strigosozonata v1.0   8 3
No Yes Sebacina vermifera MAFF 305830 v1.0   12 6
No Yes Fomitiporia mediterranea v1.0   10 4
No Yes Tulasnella calospora AL13/4D v1.0   8 3
No Yes Postia placenta   12 6
No Yes Wolfiporia cocos MD-104 SS10 v1.0   10 5
No Yes Fomitopsis pinicolav1.0   8 3
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   8 3
No Yes Phanerochaete chrysosporium RP-78 2.1   14 6
No Yes Dichomitus squalens   10 4
No Yes Trametes versicolor v1.0   10 5
No Yes Tremella mesenterica Witches' butter 14 6
No Yes Daldinia eschscholzii EC12 v1.0   6 4
No Yes Apiospora montagnei NRRL 25634 v1.0   9 5
No Yes Magnaporthe poae ATCC 64411 22   13 9
No Yes Magnaporthe grisea 70-15   6 3
No Yes Podospora anserina   11 6
No Yes Sporotrichum thermophile ATCC 42464   6 3
No Yes Thielavia terrestris NRRL 8126   9 5
No Yes Chaetomium globosum CBS 148.51   9 6
No Yes Neurospora tetrasperma   4 3
No Yes Neurospora discreta FGSC 8579   6 4
No Yes Neurospora crassa OR74A   6 4
No Yes Cryphonectria parasitica Chestnut blight fungus 5 3
No Yes Verticillium albo-atrum VaMs.102   16 9
No Yes Verticillium dahliae VdLs.17   16 9
No Yes Acremonium alcalophilumv 1.0   7 4
No Yes Glomerella graminicola 22   17 9
No Yes Fusarium graminearum   13 8
No Yes Nectria haematococca mpVI   12 7
No Yes Fusarium oxysporum f. sp. lycopersici 4286   13 9
No Yes Fusarium verticillioides 7600   13 8
No Yes Trichoderma asperellum CBS 433.97 v1.0   6 4
No Yes Trichoderma atroviride   7 5
No Yes Trichoderma citrinoviride v1.0   7 4
No Yes Trichoderma reesei 1.2   7 4
No Yes Trichoderma virens Gv29-8   7 5
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   5 3
No Yes Trichoderma harzianum CBS 226.95 v1.0   7 5
No Yes Amorphotheca resinae v1.0 Creosote fungus 7 4
No Yes Botrytis cinerea B05.10   5 3
No Yes Sclerotinia sclerotiorum   5 3
No Yes Blumeria graminis 22   1 1
No Yes Didymella exigua CBS 183.55 v1.0   9 5
No Yes Leptosphaeria maculans 22   6 5
No Yes Setosphaeria turcica v1.0   7 4
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   9 5
No Yes Cochliobolus victoriae FI3 v1.0   9 5
No Yes Cochliobolus carbonum 26-R-13 v1.0   9 5
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 9 5
No Yes Alternaria brassicicola   7 4
No Yes Cochliobolus lunatus m118 v2.0   9 5
No Yes Pyrenophora teres f. teres 22   7 4
No Yes Pyrenophora tritici-repentis   7 4
No Yes Stagonospora nodorum   12 7
No Yes Mycosphaerella graminicola IPO323   11 6
No Yes Zasmidium cellare ATCC 36951 v1.0   13 7
No Yes Dothistroma septosporum   5 3
No Yes Septoria musiva v1.0   5 3
No Yes Mycosphaerella fijiensis CIRAD86   7 4
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   7 4
No Yes Paracoccidioides brasiliensis Pb18   3 2
No Yes Coccidioides posadasii RMSCC 3488   3 2
No Yes Coccidioides immitis RS   3 2
No Yes Ajellomyces dermatitidis SLH14081   4 3
No Yes Histoplasma capsulatum class NAmI strain WU24   5 3
No Yes Microsporum canis CBS 113480   5 3
No Yes Trichophyton equinum CBS 127.97   5 3
No Yes Trichophyton verrucosum HKI 0517   5 3
No Yes Arthroderma benhamiae CBS 112371   5 3
No Yes Trichophyton tonsurans CBS 112818   5 3
No Yes Trichophyton rubrum CBS 118892   5 3
No Yes Uncinocarpus reesii 1704   5 3
No Yes Aspergillus zonatus v1.0   3 2
No Yes Penicillium chrysogenum Wisconsin 54-1255   3 2
No Yes Penicillium chrysogenum v1.0   3 2
No Yes Aspergillus acidus v1.0   6 5
No Yes Aspergillus fumigatus Af293   4 3
No Yes Aspergillus brasiliensis v1.0   7 5
No Yes Aspergillus nidulans FGSC A4   3 2
No Yes Aspergillus sydowii v1.0   6 4
No Yes Aspergillus versicolor v1.0   6 4
No Yes Aspergillus glaucus   3 2
No Yes Aspergillus carbonarius ITEM 5010   3 2
No Yes Neosartorya fischeri NRRL 181   4 3
No Yes Aspergillus terreus NIH2624   3 2
No Yes Aspergillus tubingensis v1.0   7 5
No Yes Aspergillus wentii v1.0   3 2
No Yes Aspergillus oryzae RIB40   3 2
No Yes Aspergillus niger 22   7 5
No Yes Aspergillus niger ATCC 1015   7 5
No Yes Aspergillus flavus NRRL3357   3 2
No Yes Aspergillus clavatus NRRL 1   3 2
No Yes Penicillium marneffei ATCC 18224   5 3
No Yes Tuber melanosporum Mel28 22   8 5
No Yes Tuber melanosporum Vittad Perigord truffle 11 7
No Yes Hansenula polymorpha v2.0   5 2
No Yes Dekkera bruxellensis CBS 2499 v2.0   5 2
No Yes Pichia membranifaciensv1.0   2 1
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   3 2
No Yes Candida dubliniensis CD36   2 1
No Yes Candida tropicalis MYA-3404   2 1
No Yes Candida parapsilosis   3 2
No Yes Candida albicans SC5314   2 1
No Yes Lodderomyces elongisporus NRRL YB-4239   3 2
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   3 2
No Yes Pichia stipitis CBS 6054   3 2
No Yes Candida guilliermondii ATCC 6260   3 2
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   4 2
No Yes Debaromyces hansenii   3 2
No Yes Wickerhamomyces anomalus   5 2
No Yes Pichia pastoris GS115   5 2
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   2 1
No Yes Yarrowia lipolytica CLIB122   5 2
No Yes Candida lusitaniae ATCC 42720   4 3
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   3 2
No Yes Vanderwaltozyma polyspora DSM 70294   4 2
No Yes Candida glabrata CBS138   4 2
No Yes Kluyveromyces thermotolerans CBS 6340   4 2
No Yes Lachancea kluyveri   4 2
No Yes Kluyveromyces waltii   5 2
No Yes Ashbya gossypii ATCC 10895   4 2
No Yes Zygosaccharomyces rouxii   3 1
No Yes Saccharomyces mikatae MIT   4 1
No Yes Saccharomyces paradoxus MIT   3 2
No Yes Saccharomyces cerevisiae 76 Baker's yeast 4 1
No Yes Saccharomyces bayanus MIT   4 1
No Yes Kluyveromyces lactis   6 2
No Yes Schizosaccharomyces cryophilus OY26 22   4 2
No Yes Schizosaccharomyces octosporus yFS286   4 2
No Yes Schizosaccharomyces japonicus yFS275   4 2
No Yes Schizosaccharomyces pombe Fission yeast 4 2
No Yes Catenaria anguillulae PL171 v1.0   4 2
No Yes Allomyces macrogynus ATCC 38327   7 6
No Yes Spizellomyces punctatus DAOM BR117   7 4
No Yes Selaginella moellendorffii   26 17
No Yes Pinus taeda Loblolly pine 19 13
No Yes Picea abies Norway spruce 23 15
No Yes Eucalyptus grandis v201 Rose gum 40 27
No Yes Theobroma cacao B97-61/B2 v1 Cacao 35 24
No Yes Gossypium raimondii v221   57 40
No Yes Citrus clementina v165   37 26
No Yes Citrus sinensis v154 Sweet orange 35 24
No Yes Thellungiella halophila v173   37 25
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 61 43
No Yes Capsella rubella v183   38 26
No Yes Arabidopsis lyrata Lyrate rockcress 36 25
No Yes Arabidopsis thaliana 10 Thale cress 38 26
No Yes Carica papaya Papaya 30 20
No Yes Medicago truncatula Barrel medic 62 46
No Yes Phaseolus vulgaris v186 French bean 57 46
No Yes Glycine max v109 Soybean 100 78
No Yes Cucumis sativus v122 Cucumber 37 26
No Yes Fragaria vesca Wild strawberry 47 33
No Yes Malus domestica v196 Apple 59 44
No Yes Prunus persica v139 Peach 36 27
No Yes Linum usitatissimum v200 Flax 69 56
No Yes Manihot esculenta v147 Cassava 52 39
No Yes Populus trichocarpa v156 Black cottonwood 79 61
No Yes Vitis vinifera Wine grape 23 17
No Yes Mimulus guttatus v140 Spotted monkey flower 41 28
No Yes Solanum lycopersicum v.2.3 Tomato 37 26
No Yes Solanum tuberosum Potato 47 34
No Yes Actinidia chinensis Hongyang   61 41
No Yes Aquilegia coerulea v195   38 29
No Yes Triticum urartu 22   19 15
No Yes Triticum aestivum 22 Bread wheat 47 39
No Yes Aegilops tauschii 22   31 26
No Yes Brachypodium distachyon Stiff brome 38 28
No Yes Oryza barthii 22 African wild rice 31 26
No Yes Oryza meridionalis 22   37 26
No Yes Oryza glumaepatula 22   40 30
No Yes Oryza glaberrima African rice 38 29
No Yes Oryza punctata 22   41 29
No Yes Oryza nivara 22   40 30
No Yes Oryza brachyantha 22 Malo sina 31 25
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 44 33
No Yes Oryza sativa v193 Rice 44 33
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 41 31
No Yes Panicum virgatum v202 Switchgrass 59 46
No Yes Setaria italica v164 Foxtail millet 34 24
No Yes Zea mays subsp. mays Maize 47 34
No Yes Zea mays v181 Maize 49 36
No Yes Sorghum bicolor Sorghum 41 30
No Yes Musa balbisiana Balbis banana 47 35
No Yes Musa acuminata 22 Wild Malaysian banana 37 27
No Yes Amborella trichopoda 22   21 16
No Yes Physcomitrella patens   18 16
No Yes Coccomyxa subellipsoidea sp. C-169 v2   12 9
No Yes Asterochloris sp. Cgr/DA1pho v1.0   4 4
No Yes Chlorella variabilis sp. NC64A   32 29
No Yes Chlorella vulgaris   12 9
No Yes Volvox carteri f. nagariensis   26 18
No Yes Volvox carteri v199   26 17
No Yes Chlamydomonas reinhardtii 4.0   34 17
No Yes Ostreococcus sp. RCC809   8 6
No Yes Ostreococcus lucimarinus CCE9901   8 6
No Yes Ostreococcus tauri   8 6
No Yes Bathycoccus prasinos   10 9
No Yes Micromonas sp. RCC299   11 8
No Yes Micromonas pusilla CCMP1545 v3.0   11 9
No Yes Cyanidioschyzon merolae strain 10D 22   1 1
No Yes Cyanidioschyzon merolae   1 1
No Yes Porphyridium purpureum 02_2012   2 2
No Yes Ectocarpus siliculosus   8 2
No Yes Aureococcus anophagefferens   3 3
No Yes Phaeodactylum tricornutumCCAP 1055/1   12 8
No Yes Fragilariopsis cylindrus   178 144
No Yes Thalassiosira pseudonana CCMP1335   6 5
No Yes Neospora caninum   3 3
No Yes Toxoplasma gondii VEG   3 3
No Yes Toxoplasma gondii ME49   3 3
No Yes Toxoplasma gondii GT1   3 3
No Yes Babesia bovis T2Bo   2 2
No Yes Theileria parva   1 1
No Yes Theileria annulata   1 1
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium vivax SaI-1 7.0   1 1
No Yes Plasmodium knowlesi strain H   1 1
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Symbiodinium minutum clade B1 v1.2   11 7
No Yes Guillardia theta CCMP2712 v1.0   2 2
No Yes Emiliania huxleyi CCMP1516   11 10
No Yes Leptolyngbya sp. PCC 7376   1 1
No Yes Pseudanabaena sp. PCC 7367   1 1
No Yes Acaryochloris marina MBIC11017   2 2
No Yes Synechocystis sp. PCC 6803   2 2
No Yes Thermosynechococcus sp. NK55   1 1
No Yes Thermosynechococcus elongatus BP-1   1 1
No Yes Synechococcus sp. PCC 7502   2 2
No Yes Synechococcus sp. PCC 6312   2 2
No Yes Synechococcus elongatus PCC 7942   2 2
No Yes Microcoleus sp. PCC 7113   4 4
No Yes Trichodesmium erythraeum IMS101   2 2
No Yes Geitlerinema sp. PCC 7407   3 3
No Yes Cyanothece sp. PCC 8802   2 2
No Yes Gloeocapsa sp. PCC 7428   5 5
No Yes Halothece sp. PCC 7418   1 1
No Yes Microcystis aeruginosa NIES-843   1 1
No Yes Gloeobacter violaceus PCC 7421   4 4
No Yes Rivularia sp. PCC 7116   3 3
No Yes Calothrix sp. PCC 7507   6 6
No Yes Anabaena variabilis ATCC 29413   6 6
No Yes 'Nostoc azollae' 0708   2 2
No Yes Nostoc sp. PCC 7107   5 5
No Yes Nostoc punctiforme PCC 73102   5 5
No Yes Nostoc sp. PCC 7120   6 6
No Yes Nostoc sp. PCC 7524   3 3
No Yes Anabaena sp. 90   3 3
No Yes Ilumatobacter coccineus   6 4
No Yes Thermobispora bispora DSM 43833   1 1
No Yes Nakamurella multipartita DSM 44233   1 1
No Yes Modestobacter marinus   1 1
No Yes Blastococcus saxobsidens DD2   1 1
No Yes Geodermatophilus obscurus DSM 43160   2 2
No Yes Kineococcus radiotolerans SRS30216   1 1
No Yes Catenulispora acidiphila DSM 44928   1 1
No Yes Stackebrandtia nassauensis DSM 44728   1 1
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   1 1
No Yes Streptosporangium roseum DSM 43021   2 2
No Yes Kitasatospora setae KM-6054   1 1
No Yes Streptomyces coelicolor A3(2)   2 2
No Yes Streptomyces sp. PAMC26508   4 4
No Yes Streptomyces flavogriseus ATCC 33331   3 3
No Yes Streptomyces sp. SirexAA-E   1 1
No Yes Streptomyces griseus subsp. griseus NBRC 13350   4 4
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Streptomyces scabiei 87.22   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   1 1
No Yes Actinosynnema mirum DSM 43827   1 1
No Yes Pseudonocardia dioxanivorans CB1190   1 1
No Yes Amycolatopsis mediterranei U32   1 1
No Yes Kribbella flavida DSM 17836   3 3
No Yes Nocardioides sp. JS614   1 1
No Yes Verrucosispora maris AB-18-032   1 1
No Yes Micromonospora sp. L5   1 1
No Yes Micromonospora aurantiaca ATCC 27029   1 1
No Yes Actinoplanes sp. N902-109   2 2
No Yes Actinoplanes sp. SE50/110   3 3
No Yes Actinoplanes missouriensis 431   3 3
No Yes Segniliparus rotundus DSM 44985   1 1
No Yes Gordonia sp. KTR9   1 1
No Yes Gordonia polyisoprenivorans VH2   1 1
No Yes Gordonia bronchialis DSM 43247   1 1
No Yes Rhodococcus jostii RHA1   1 1
No Yes Rhodococcus equi 103S   1 1
No Yes Rhodococcus opacus B4   1 1
No Yes Rhodococcus erythropolis PR4   1 1
No Yes Nocardia cyriacigeorgica GUH-2   1 1
No Yes Amycolicicoccus subflavus DQS3-9A1   1 1
No Yes Mycobacterium sp. JLS   3 3
No Yes Mycobacterium vanbaalenii PYR-1   3 3
No Yes Mycobacterium canettii CIPT 140010059   2 2
No Yes Mycobacterium africanum GM041182   2 2
No Yes Mycobacterium tuberculosis KZN 1435   2 2
No Yes Mycobacterium tuberculosis   2 2
No Yes Mycobacterium bovis BCG str. Pasteur 1173P2   2 2
No Yes Mycobacterium rhodesiae NBB3   3 3
No Yes Mycobacterium gilvum PYR-GCK   3 3
No Yes Mycobacterium chubuense NBB4   2 2
No Yes Mycobacterium marinum M   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Corynebacterium efficiens YS-314   1 1
No Yes Corynebacterium variabile DSM 44702   2 2
No Yes Sanguibacter keddieii DSM 10542   1 1
No Yes Beutenbergia cavernae DSM 12333   1 1
No Yes Microbacterium testaceum StLB037   1 1
No Yes Intrasporangium calvum DSM 43043   1 1
No Yes Cellulomonas fimi ATCC 484   1 1
No Yes [Cellvibrio] gilvus ATCC 13127   1 1
No Yes Arthrobacter phenanthrenivorans Sphe3   1 1
No Yes Arthrobacter chlorophenolicus A6   2 2
No Yes Arthrobacter aurescens TC1   1 1
No Yes Arthrobacter arilaitensis Re117   1 1
No Yes Arthrobacter sp. Rue61a   1 1
No Yes Arthrobacter sp. FB24   1 1
No Yes Caldilinea aerophila DSM 14535 = NBRC 104270   8 5
No Yes Dehalococcoides ethenogenes 195   1 1
No Yes Dehalococcoides sp. BAV1   1 1
No Yes Anaerolinea thermophila UNI-1   5 1
No Yes Truepera radiovictrix DSM 17093   4 4
No Yes Deinococcus gobiensis I-0   4 2
No Yes Deinococcus deserti VCD115   3 1
No Yes Deinococcus maricopensis DSM 21211   3 1
No Yes Deinococcus geothermalis DSM 11300   3 1
No Yes Deinococcus proteolyticus MRP   1 1
No Yes Deinococcus radiodurans R1   3 1
No Yes Meiothermus silvanus DSM 9946   1 1
No Yes Meiothermus ruber DSM 1279   1 1
No Yes Clostridium lentocellum DSM 5427   1 1
No Yes Clostridium cellulovorans 743B   1 1
No Yes Halanaerobium hydrogeniformans   1 1
No Yes Bacillus pseudofirmus OF4   1 1
No Yes Bacillus cellulosilyticus DSM 2522   1 1
No Yes Gemmatimonas aurantiaca T-27   2 2
No Yes Haliscomenobacter hydrossis DSM 1100   5 4
No Yes Niastella koreensis GR20-10   7 6
No Yes Chitinophaga pinensis DSM 2588   2 2
No Yes Salinibacter ruber M8   4 4
No Yes Belliella baltica DSM 15883   9 6
No Yes Cyclobacterium marinum DSM 745   2 1
No Yes Marivirga tractuosa DSM 4126   6 5
No Yes Fibrella aestuarina   6 4
No Yes Dyadobacter fermentans DSM 18053   4 3
No Yes Cytophaga hutchinsonii ATCC 33406   1 1
No Yes Spirosoma linguale DSM 74   9 6
No Yes Runella slithyformis DSM 19594   7 5
No Yes Odoribacter splanchnicus DSM 20712   3 3
No Yes Prevotella melaninogenica ATCC 25845   1 1
No Yes Prevotella denticola F0289   1 1
No Yes Bacteroides thetaiotaomicron VPI-5482   5 4
No Yes Pedobacter saltans DSM 12145   6 4
No Yes Solitalea canadensis DSM 3403   1 1
No Yes Pedobacter heparinus DSM 2366   8 5
No Yes Sphingobacterium sp. 21   2 2
No Yes Fluviicola taffensis DSM 16823   2 2
No Yes Owenweeksia hongkongensis DSM 17368   4 3
No Yes Zunongwangia profunda SM-A87   5 4
No Yes Krokinobacter sp. 4H-3-7-5   7 5
No Yes Gramella forsetii KT0803   3 3
No Yes Lacinutrix sp. 5H-3-7-4   4 3
No Yes Maribacter sp. HTCC2170   6 3
No Yes Robiginitalea biformata HTCC2501   7 5
No Yes Croceibacter atlanticus HTCC2559   2 2
No Yes Aequorivita sublithincola DSM 14238   9 7
No Yes Zobellia galactanivorans   7 4
No Yes Muricauda ruestringensis DSM 13258   7 4
No Yes Cellulophaga algicola DSM 14237   9 6
No Yes Cellulophaga lytica DSM 7489   6 3
No Yes Flavobacteriaceae bacterium 3519-10   3 2
No Yes Polaribacter sp. MED152   3 2
No Yes Flavobacterium indicum GPTSA100-9   3 2
No Yes Flavobacterium johnsoniae UW101   1 1
No Yes Candidatus Protochlamydia amoebophila UWE25   1 1
No Yes Phycisphaera mikurensis NBRC 102666   2 2
No Yes Isosphaera pallida ATCC 43644   3 3
No Yes Planctomyces brasiliensis DSM 5305   1 1
No Yes Planctomyces limnophilus DSM 3776   2 2
No Yes Rhodopirellula baltica SH 1   1 1
No Yes Pirellula staleyi DSM 6068   2 2
No Yes Coraliomargarita akajimensis DSM 45221   3 2
No Yes Opitutus terrae PB90-1   1 1
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Spirochaeta smaragdinae DSM 11293   2 2
No Yes Treponema brennaborense DSM 12168   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Mesotoga prima MesG1.Ag.4.2   3 1
No Yes Candidatus Solibacter usitatus Ellin6076   2 2
No Yes Granulicella tundricola MP5ACTX9   1 1
No Yes Granulicella mallensis MP5ACTX8   1 1
No Yes Terriglobus roseus DSM 18391   1 1
No Yes Acidobacterium capsulatum ATCC 51196   1 1
No Yes Geobacter sp. M21   1 1
No Yes Geobacter uraniireducens Rf4   1 1
No Yes Pelobacter propionicus DSM 2379   1 1
No Yes Pelobacter carbinolicus DSM 2380   2 2
No Yes Methylibium petroleiphilum PM1   1 1
No Yes Rubrivivax gelatinosus IL144   1 1
No Yes Ralstonia eutropha JMP134   2 1
No Yes Ralstonia pickettii 12D   1 1
No Yes Alicycliphilus denitrificans K601   2 1
No Yes Ramlibacter tataouinensis TTB310   2 2
No Yes Delftia sp. Cs1-4   1 1
No Yes Delftia acidovorans SPH-1   1 1
No Yes Polaromonas sp. JS666   1 1
No Yes Polaromonas naphthalenivorans CJ2   1 1
No Yes Acidovorax ebreus TPSY   1 1
No Yes Acidovorax sp. KKS102   4 3
No Yes Acidovorax sp. JS42   1 1
No Yes Acidovorax citrulli AAC00-1   1 1
No Yes Acidovorax avenae subsp. avenae ATCC 19860   1 1
No Yes Collimonas fungivorans Ter331   1 1
No Yes Janthinobacterium sp. Marseille   1 1
No Yes Advenella kashmirensis WT001   1 1
No Yes Bordetella avium 197N   1 1
No Yes Achromobacter xylosoxidans   1 1
No Yes Asticcacaulis excentricus CB 48   1 1
No Yes Brevundimonas subvibrioides ATCC 15264   3 3
No Yes Caulobacter crescentus NA1000   1 1
No Yes Caulobacter segnis ATCC 21756   2 2
No Yes Phenylobacterium zucineum HLK1   1 1
No Yes Erythrobacter litoralis HTCC2594   4 4
No Yes Sphingopyxis alaskensis RB2256   2 2
No Yes Novosphingobium sp. PP1Y   1 1
No Yes Novosphingobium aromaticivorans DSM 12444   2 2
No Yes Maricaulis maris MCS10   1 1
No Yes Hyphomonas neptunium ATCC 15444   4 4
No Yes Dinoroseobacter shibae DFL 12   4 3
No Yes Phaeobacter gallaeciensis 2.10   1 1
No Yes Pseudovibrio sp. FO-BEG1   1 1
No Yes Jannaschia sp. CCS1   2 2
No Yes Ruegeria sp. TM1040   2 2
No Yes Ketogulonicigenium vulgare Y25   1 1
No Yes Ketogulonigenium vulgarum WSH-001   1 1
No Yes Roseobacter litoralis Och 149   3 3
No Yes Roseobacter denitrificans OCh 114   3 3
No Yes Rhodobacter sphaeroides ATCC 17029   1 1
No Yes Azospirillum lipoferum 4B   1 1
No Yes Azospirillum sp. B510   1 1
No Yes Azospirillum brasilense Sp245   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Acidiphilium multivorum AIU301   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Gluconobacter oxydans 621H   1 1
No Yes Acetobacter pasteurianus IFO 3283-01   1 1
No Yes Polymorphum gilvum SL003B-26A1   1 1
No Yes Methylobacterium chloromethanicum CM4   1 1
No Yes Methylobacterium extorquens AM1   1 1
No Yes Methylobacterium populi BJ001   1 1
No Yes Parvibaculum lavamentivorans DS-1   1 1
No Yes Ochrobactrum anthropi ATCC 49188   1 1
No Yes Sinorhizobium fredii NGR234   1 1
No Yes Sinorhizobium medicae WSM419   1 1
No Yes Genome sequence of Rhizobium sp. strain IRBG74   1 1
No Yes Rhizobium etli CIAT 652   1 1
No Yes Rhizobium leguminosarum bv. viciae 3841   1 1
No Yes Agrobacterium tumefaciens str. C58   1 1
No Yes Agrobacterium radiobacter K84   1 1
No Yes Agrobacterium sp. H13-3   1 1
No Yes Agrobacterium vitis S4   1 1
No Yes Mesorhizobium opportunistum WSM2075   2 2
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   2 2
No Yes Mesorhizobium loti MAFF303099   2 2
No Yes Methylocella silvestris BL2   2 2
No Yes Beijerinckia indica subsp. indica ATCC 9039   1 1
No Yes Pelagibacterium halotolerans B2   2 2
No Yes Rhodopseudomonas palustris BisA53   1 1
No Yes Bradyrhizobium japonicum USDA 110   3 3
No Yes Bradyrhizobium sp. ORS 278   2 2
No Yes Oceanimonas sp. GK1   1 1
No Yes Vibrio sp. Ex25   1 1
No Yes Vibrio harveyi ATCC BAA-1116   1 1
No Yes Vibrio splendidus LGP32   1 1
No Yes Photobacterium profundum SS9   2 1
No Yes Psychromonas ingrahamii 37   1 1
No Yes Colwellia psychrerythraea 34H   4 1
No Yes Pseudoalteromonas sp. SM9913   5 2
No Yes Glaciecola nitratireducens FR1064   5 2
No Yes Marinobacter sp. BSs20148   1 1
No Yes Marinobacter hydrocarbonoclasticus ATCC 49840   2 1
No Yes Marinobacter aquaeolei VT8   2 1
No Yes Alteromonas sp. SN2   1 1
No Yes Marinomonas sp. MWYL1   1 1
No Yes Stenotrophomonas maltophilia K279a   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   1 1
No Yes Xanthomonas oryzae pv. oryzae PXO99A   1 1
No Yes Xanthomonas campestris pv. campestris str. B100   1 1
No Yes Rahnella sp. Y9602   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   1 1
No Yes Pantoea vagans C9-1   1 1
No Yes Pantoea ananatis LMG 20103   1 1
No Yes Erwinia billingiae Eb661   1 1
No Yes Pseudomonas fluorescens SBW25   1 1
No Yes Psychrobacter sp. G   2 2
No Yes Psychrobacter sp. PRwf-1   2 2
No Yes Psychrobacter arcticus 273-4   2 2
No Yes Psychrobacter cryohalolentis K5   2 2
No Yes Methanocella arvoryzae MRE50   6 6
No Yes Methanocella conradii HZ254   3 3
No Yes Methanocella paludicola SANAE   8 8
No Yes Methanosaeta harundinacea 6Ac   2 2
No Yes Methanosaeta concilii GP6   2 1
No Yes Methanohalobium evestigatum Z-7303   3 2
No Yes Methanococcoides burtonii DSM 6242   1 1
No Yes Methanosarcina acetivorans C2A   3 2
No Yes Methanosarcina mazei Go1   3 2
No Yes Methanosarcina barkeri str. Fusaro   1 1
No Yes Methanohalophilus mahii DSM 5219   1 1
No Yes Methanosphaerula palustris E1-9c   1 1
No Yes Methanoregula boonei 6A8   1 1
No Yes Methanoculleus bourgensis MS2   7 7
No Yes Methanoculleus marisnigri JR1   8 8
No Yes Haloarcula hispanica ATCC 33960   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 24 6
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 94 26
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 14 6
No Yes Ascaris suum Victoria/Ghent Pig roundworm 5 2
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 5 2
No Yes Cryptococcus neoformans var. grubii H99   10 4
No Yes Cryptococcus neoformans B-3501A   10 4
No Yes Cryptococcus neoformans JEC21   10 4
No Yes Paracoccidioides brasiliensis Pb01   3 2
No Yes Paracoccidioides brasiliensis Pb03   3 2
No Yes Coccidioides posadasii str. Silveira   3 2
No Yes Coccidioides immitis RMSCC 3703   2 2
No Yes Coccidioides immitis RMSCC 2394   3 2
No Yes Coccidioides immitis H538.4   2 2
No Yes Ajellomyces dermatitidis ER-3   4 3
No Yes Histoplasma capsulatum H143   4 2
No Yes Histoplasma capsulatum H88   5 3
No Yes Histoplasma capsulatum G186AR   5 3
No Yes Aspergillus fumigatus A1163   4 3
No Yes Candida albicans WO-1   2 1
No Yes Saccharomyces cerevisiae UC5   4 1
No Yes Saccharomyces cerevisiae PW5   4 1
No Yes Saccharomyces cerevisiae YJM269   4 1
No Yes Saccharomyces cerevisiae T7   4 1
No Yes Saccharomyces cerevisiae FostersB   4 1
No Yes Saccharomyces cerevisiae FostersO   3 1
No Yes Saccharomyces cerevisiae VL3   4 1
No Yes Saccharomyces cerevisiae Vin13   4 1
No Yes Saccharomyces cerevisiae LalvinQA23   4 1
No Yes Saccharomyces cerevisiae AWRI796   4 1
No Yes Saccharomyces cerevisiae Sigma1278b   4 1
No Yes Saccharomyces cerevisiae W303   4 1
No Yes Saccharomyces cerevisiae JAY291   4 1
No Yes Saccharomyces cerevisiae AWRI1631   4 1
No Yes Saccharomyces cerevisiae YPS163   3 1
No Yes Saccharomyces cerevisiae CLIB215   4 1
No Yes Saccharomyces cerevisiae YJM789   4 1
No Yes Saccharomyces cerevisiae YJM789   4 1
No Yes Saccharomyces cerevisiae RM11-1a   4 1
No Yes Saccharomyces cerevisiae RM11-1a   4 1
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 4 1
No Yes Schizosaccharomyces pombe 972h-   4 2
No Yes Batrachochytrium dendrobatidis JEL423   5 4
No Yes Batrachochytrium dendrobatidis JAM81   6 4
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 33 23
No Yes Hordeum vulgare 22 Domesticated barley 37 33
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 36 28
No Yes Neospora caninum Nc-Liverpool 6.2   3 3
No Yes Plasmodium falciparum HB3   1 1
No Yes Chroococcidiopsis thermalis PCC 7203   7 7
No Yes Chamaesiphon minutus PCC 6605   4 4
No Yes Synechocystis sp. PCC 6803 substr. PCC-P   2 2
No Yes Synechocystis sp. PCC 6803 substr. PCC-N   2 2
No Yes Synechocystis sp. PCC 6803 substr. GT-I   2 2
No Yes Synechocystis sp. PCC 6803   2 2
No Yes Cyanobium gracile PCC 6307   1 1
No Yes Dactylococcopsis salina PCC 8305   3 3
No Yes Synechococcus sp. JA-2-3B'a(2-13)   4 4
No Yes Synechococcus sp. JA-3-3Ab   4 4
No Yes Synechococcus sp. PCC 7002   2 2
No Yes Synechococcus elongatus PCC 6301   2 2
No Yes Crinalium epipsammum PCC 9333   3 3
No Yes Oscillatoria nigro-viridis PCC 7112   4 4
No Yes Oscillatoria acuminata PCC 6304   3 3
No Yes Arthrospira platensis NIES-39   4 4
No Yes Cyanothece sp. PCC 7822   5 5
No Yes Cyanothece sp. PCC 7425   3 3
No Yes Cyanothece sp. PCC 7424   4 4
No Yes Cyanothece sp. ATCC 51142   2 2
No Yes Cyanothece sp. PCC 8801   2 2
No Yes Cyanobacterium aponinum PCC 10605   1 1
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   6 6
No Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327   3 3
No Yes Stanieria cyanosphaera PCC 7437   2 2
No Yes Calothrix parietina Calothrix sp. PCC 6303   4 4
No Yes Cylindrospermum stagnale PCC 7417   5 5
No Yes Anabaena cylindrica PCC 7122   3 3
No Yes Nocardiopsis alba ATCC BAA-2165   1 1
No Yes Streptomyces albus J1074   1 1
No Yes Streptomyces fulvissimus DSM 40593   3 3
No Yes Streptomyces venezuelae ATCC 10712   1 1
No Yes Streptomyces collinus Tu 365   2 2
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   1 1
No Yes Saccharothrix espanaensis DSM 44229   1 1
No Yes Amycolatopsis mediterranei RB   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis orientalis HCCB10007   1 1
No Yes Actinoplanes friuliensis DSM 7358   2 2
No Yes Rhodococcus pyridinivorans SB3094   1 1
No Yes Rhodococcus erythropolis CCM2595   1 1
No Yes Nocardia brasiliensis ATCC 700358   1 1
No Yes Mycobacterium liflandii 128FXT   1 1
No Yes Mycobacterium sp. KMS   3 3
No Yes Mycobacterium sp. MCS   3 3
No Yes Mycobacterium indicus pranii MTCC 9506   2 2
No Yes Mycobacterium canettii CIPT 140070017   2 2
No Yes Mycobacterium canettii CIPT 140060008   2 2
No Yes Mycobacterium canettii CIPT 140070008   2 2
No Yes Mycobacterium canettii CIPT 140070010   2 2
No Yes Mycobacterium tuberculosis EAI5/NITR206   2 2
No Yes Mycobacterium tuberculosis EAI5   2 2
No Yes Mycobacterium tuberculosis CAS/NITR204   2 2
No Yes Mycobacterium tuberculosis str. Beijing/NITR203   2 2
No Yes Mycobacterium tuberculosis UT205   2 2
No Yes Mycobacterium tuberculosis RGTB423   2 2
No Yes Mycobacterium tuberculosis RGTB327   2 2
No Yes Mycobacterium tuberculosis CTRI-2   2 2
No Yes Mycobacterium tuberculosis str. Erdman = ATCC 35801   2 2
No Yes Mycobacterium tuberculosis KZN 605   2 2
No Yes Mycobacterium tuberculosis KZN 4207   2 2
No Yes Mycobacterium tuberculosis CCDC5180   2 2
No Yes Mycobacterium tuberculosis CCDC5079   2 2
No Yes Mycobacterium tuberculosis CCDC5079   2 2
No Yes Mycobacterium tuberculosis H37Ra   2 2
No Yes Mycobacterium tuberculosis str. Haarlem/NITR202   2 2
No Yes Mycobacterium tuberculosis str. Haarlem   2 2
No Yes Mycobacterium tuberculosis F11   2 2
No Yes Mycobacterium tuberculosis H37Rv   2 2
No Yes Mycobacterium tuberculosis CDC1551   2 2
No Yes Mycobacterium bovis AF2122/97   2 2
No Yes Mycobacterium bovis BCG str. Korea 1168P   2 2
No Yes Mycobacterium bovis BCG str. Mexico   2 2
No Yes Mycobacterium bovis BCG str. Tokyo 172   2 2
No Yes Mycobacterium gilvum Spyr1   3 3
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Mycobacterium kansasii ATCC 12478   2 2
No Yes Corynebacterium maris DSM 45190   1 1
No Yes Dehalococcoides mccartyi GY50   1 1
No Yes Dehalococcoides mccartyi DCMB5   1 1
No Yes Dehalococcoides mccartyi BTF08   1 1
No Yes Dehalococcoides sp. GT   1 1
No Yes Dehalococcoides sp. VS   1 1
No Yes Dehalococcoides sp. CBDB1   1 1
No Yes Chthonomonas calidirosea T49   1 1
No Yes Deinococcus peraridilitoris DSM 19664   4 2
No Yes Salinibacter ruber DSM 13855   7 6
No Yes Echinicola vietnamensis DSM 17526   19 9
No Yes Emticicia oligotrophica DSM 17448   3 2
No Yes Prevotella sp. oral taxon 299 str. F0039   1 1
No Yes Prevotella dentalis DSM 3688   18 14
No Yes Bacteroides xylanisolvens XB1A   5 3
No Yes Nonlabens dokdonensis DSW-6   7 5
No Yes Psychroflexus torquis ATCC 700755   10 6
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Geobacter sp. M18   1 1
No Yes Pandoraea pnomenusa 3kgm   1 1
No Yes Ralstonia pickettii 12J   1 1
No Yes Burkholderia lata   1 1
No Yes Variovorax paradoxus B4   1 1
No Yes Variovorax paradoxus EPS   2 2
No Yes Achromobacter xylosoxidans NBRC 15126 = ATCC 27061   1 1
No Yes Caulobacter crescentus CB15   1 1
No Yes Phaeobacter gallaeciensis DSM 17395   1 1
No Yes Phaeobacter gallaeciensis DSM 26640   1 1
No Yes Octadecabacter antarcticus 307   3 3
No Yes Octadecabacter arcticus 238   4 4
No Yes Rhodobacter sphaeroides KD131   1 1
No Yes Rhodobacter sphaeroides ATCC 17025   1 1
No Yes Rhodobacter sphaeroides 2.4.1   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Gluconobacter oxydans H24   1 1
No Yes Acetobacter pasteurianus 386B   1 1
No Yes Acetobacter pasteurianus IFO 3283-12   1 1
No Yes Acetobacter pasteurianus IFO 3283-01-42C   1 1
No Yes Acetobacter pasteurianus IFO 3283-32   1 1
No Yes Acetobacter pasteurianus IFO 3283-26   1 1
No Yes Acetobacter pasteurianus IFO 3283-22   1 1
No Yes Acetobacter pasteurianus IFO 3283-07   1 1
No Yes Acetobacter pasteurianus IFO 3283-03   1 1
No Yes Methylobacterium extorquens DM4   1 1
No Yes Methylobacterium extorquens PA1   1 1
No Yes Sinorhizobium fredii HH103   1 1
No Yes Sinorhizobium meliloti GR4   1 1
No Yes Sinorhizobium meliloti 1021   1 1
No Yes Rhizobium etli CFN 42   2 2
No Yes Rhizobium etli bv. mimosae str. Mim1   2 2
No Yes Rhizobium tropici CIAT 899   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   1 1
No Yes Mesorhizobium australicum WSM2073   2 2
No Yes Rhodopseudomonas palustris DX-1   1 1
No Yes Rhodopseudomonas palustris TIE-1   1 1
No Yes Rhodopseudomonas palustris HaA2   1 1
No Yes Rhodopseudomonas palustris BisB5   1 1
No Yes Rhodopseudomonas palustris BisB18   1 1
No Yes Rhodopseudomonas palustris CGA009   1 1
No Yes Bradyrhizobium sp. S23321   2 2
No Yes Bradyrhizobium sp. BTAi1   2 2
No Yes Bradyrhizobium oligotrophicum S58   2 2
No Yes Bradyrhizobium japonicum USDA 6   1 1
No Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749   1 1
No Yes Vibrio nigripulchritudo VibrioScope   1 1
No Yes Glaciecola psychrophila 170   3 3
No Yes Alteromonas macleodii str. 'English Channel 673'   1 1
No Yes Alteromonas macleodii str. 'Balearic Sea AD45'   1 1
No Yes Alteromonas macleodii str. 'Black Sea 11'   1 1
No Yes Alteromonas macleodii ATCC 27126   1 1
No Yes Stenotrophomonas maltophilia D457   1 1
No Yes Stenotrophomonas maltophilia JV3   1 1
No Yes Stenotrophomonas maltophilia R551-3   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   1 1
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   1 1
No Yes Xanthomonas axonopodis pv. citrumelo F1   1 1
No Yes Xanthomonas axonopodis Xac29-1   1 1
No Yes Xanthomonas oryzae pv. oryzicola BLS256   1 1
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   1 1
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   1 1
No Yes Xanthomonas campestris pv. raphani 756C   1 1
No Yes Xanthomonas campestris pv. campestris str. 8004   1 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   1 1
No Yes Rahnella aquatilis HX2   1 1
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   1 1
No Yes Yersinia enterocolitica subsp. palearctica Y11   1 1
No Yes Serratia plymuthica S13   1 1
No Yes Pantoea ananatis LMG 5342   1 1
No Yes Pantoea ananatis PA13   1 1
No Yes Pantoea ananatis AJ13355   1 1
No Yes Enterobacter cloacae subsp. cloacae ENHKU01   1 1
No Yes Pseudomonas fluorescens R124   1 1
No Yes Methanomethylovorans hollandica DSM 15978   1 1
No Yes Methanolobus psychrophilus R15   4 4
No Yes Methanosarcina mazei Tuc01   3 2
No Yes Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1   1 1
No Yes Haloarcula hispanica N601   1 1
No Yes Methanobacterium sp. SWAN-1   2 2
No Yes Homo sapiens 75_37 (old version GRC) Human 56 16
No Yes Homo sapiens (NCBI version) Human 34 7
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 22 4
No Yes Heliconius numata (Incomplete)   3 2
No Yes Loa loa v3.3 (Request) Eye worm 6 2
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 8 5
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 6 2
No Yes Moniliophthora perniciosa FA553 (Genome survey)   7 7
No Yes Picea sitchensis (Incomplete) Sitka spruce 4 3
No Yes Lotus japonicus (Early assembly)   34 26
No Yes Malus x domestica (Duplicate) Apple 59 44
No Yes Ricinus communis (Early assembly) Castor bean 38 31
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   77 56
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 37 26
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 37 26
No Yes Phoenix dactylifera (Early draft) Date palm 3 3
No Yes Mycobacterium tuberculosis H37Rv (Duplicate of ex)   2 2
No Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC)   1 1
No Yes Homo sapiens 69_37 Human 26 5
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 22 4
No Yes Gorilla gorilla 69_3.1 Western gorilla 26 5
No Yes Pongo abelii 69_2 Sumatran orangutan 22 4
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 21 4
No Yes Macaca mulatta 69_1 Rhesus monkey 22 4
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 26 5
No Yes Otolemur garnettii 69_3 Small-eared galago 22 4
No Yes Microcebus murinus 69_1 Gray mouse lemur 21 4
No Yes Rattus norvegicus 69_3.4 Norway rat 18 5
No Yes Mus musculus 69_38 House mouse 22 4
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 19 4
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 22 4
No Yes Cavia porcellus 69_3 Domestic guinea pig 21 4
No Yes Oryctolagus cuniculus 69_2 Rabbit 22 4
No Yes Ochotona princeps 69 American pika 22 4
No Yes Tupaia belangeri 69 Northern tree shrew 12 3
No Yes Sus scrofa 69_10.2 Pig 19 4
No Yes Bos taurus 69_3.1 Cattle 22 4
No Yes Vicugna pacos 69_1 Alpaca 13 3
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 22 4
No Yes Mustela putorius furo 69_1.0 Domestic ferret 22 4
No Yes Ailuropoda melanoleuca 69_1 Giant panda 22 4
No Yes Canis familiaris 69_3.1 Dog 19 4
No Yes Felis catus 69 Domestic cat 18 4
No Yes Equus caballus 69_2 Horse 22 4
No Yes Myotis lucifugus 69_2.0 Little brown bat 22 4
No Yes Pteropus vampyrus 69_1 Large flying fox 22 4
No Yes Sorex araneus 69_1 European shrew 16 4
No Yes Erinaceus europaeus 69 Western European hedgehog 13 3
No Yes Procavia capensis 69_1 Cape rock hyrax 21 4
No Yes Loxodonta africana 69_3 African savanna elephant 21 5
No Yes Echinops telfairi 69 Small Madagascar hedgehog 14 4
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 17 4
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 17 4
No Yes Macropus eugenii 69_1.0 Tammar wallaby 23 4
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 17 4
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 22 4
No Yes Ornithorhynchus anatinus 69_5 Platypus 22 4
No Yes Petromyzon marinus 69_7.0 Sea lamprey 8 3
No Yes Meleagris gallopavo 69_2 Turkey 21 4
No Yes Gallus gallus 69_2 Chicken 21 4
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 24 6
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 23 6
No Yes Anolis carolinensis 69_2.0 Green anole 17 4
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 15 3
No Yes Latimeria chalumnae 69_1 Coelacanth 21 4
No Yes Gadus morhua 69_1 Atlantic cod 17 5
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 21 7
No Yes Takifugu rubripes 69_4 Torafugu 21 4
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 18 5
No Yes Oryzias latipes 69_1 Japanese medaka 22 4
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 19 4
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 26 5
No Yes Danio rerio 69_9 Zebrafish 26 5
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 6 1
No Yes Ciona intestinalis 69 Vase tunicate 7 3
No Yes Drosophila melanogaster 69_5 Fruit fly 12 4
No Yes Caenorhabditis elegans 69_215 Roundworm 3 1
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 4 1
No Yes Arabidopsis thaliana 10 Thale cress 35 24
No Yes 2_050719S (meta-genome)   3 3
No Yes 2_Base_of_chrolophyll_max (meta-genome)   1 1
No Yes 3_050719R (meta-genome)   10 10
No Yes 4_050719Q (meta-genome)   15 15
No Yes 5_050719P (meta-genome)   15 15
No Yes 6_Upper_euphotic (meta-genome)   2 2
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   6 6
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   14 13
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   6 6
No Yes Combined (meta-genome)   24 20
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   10 10
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   4 4
No Yes Dump bottom (Dump bottom) (meta-genome)   23 23
No Yes Dump top (Dump top) (meta-genome)   17 17
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   3 3
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   11 11
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   4 4
No Yes Fungus garden combined (combined) (meta-genome)   5 5
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   7 7
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   13 13
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   10 7
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   4 3
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   5 4
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   5 4
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   5 5
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   10 10
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   16 15
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   7 7
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   11 11
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   15 15
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   5 5
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   38 36
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   9 9
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   9 8
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   11 11
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   5 4
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   4 4
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   2 2
No Yes NCBI 2017_08 genome   48339 32270
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   7 7
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   1 1
No Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   18 18
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   4 4
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   8 8
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   11 11
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   2 2
No Yes Sludge/US, Jazz Assembly (meta-genome)   3 3
No Yes Sludge/US, Phrap Assembly (meta-genome)   8 7
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   20 20
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   57 55
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   52 51
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   31 31
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   43 43
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   11 11
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   18 18
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   3 2
No Yes STRING v9.0.5 (STRING)   1804 942
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   2 2
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   13 13
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   4 4
No Yes Termite Protist Endosymbiont Community (meta-genome)   2 2
No Yes Uniprot 2018_03 genome   34681 21189
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   1 1
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   15 10
No Yes Global Ocean Sampling Expedition (GOS)   1055 735
No Yes NCBI plasmid sequences (Plasmids)   20 18
No Yes NCBI viral sequences (Viral)   8 8
No Yes PDB chains (SCOP 1.75) (PDB)   3 2
No Yes Protein Data Bank (all PDB sequenc)   34 21
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   32 32
No Yes TargetDB (Targets)   19 17
No Yes UniProt viral sequences (Viral)   2 2

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