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  Home > Genomes > Tumor suppressor gene product Apc domains in all genomes


Tumor suppressor gene product Apc superfamily domain assignments
in
all genomes

Assignment details

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25 selected genomes have 68 significant domains in 67 proteins.

Showing genomes 1 to 25 of 138
  1 2 3 4 5 6   Next Last

Homo sapiens 76_38 has 12 significant domains in 12 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSP00000233607   8.63e-44   127-234   Tumor suppressor gene product Apc  
ENSP00000238483   4.84e-47   127-233   Tumor suppressor gene product Apc  
ENSP00000257430   1.31e-44   130-239   Tumor suppressor gene product Apc  
ENSP00000423224   1.29e-36   140-226   Tumor suppressor gene product Apc  
ENSP00000423828   5.23e-45   130-239   Tumor suppressor gene product Apc  
ENSP00000424265   4.32e-46   130-239   Tumor suppressor gene product Apc  
ENSP00000427089   1.31e-44   130-239   Tumor suppressor gene product Apc  
ENSP00000442954   8.63e-44   127-234   Tumor suppressor gene product Apc  
ENSP00000454861   0.000000000000379   2-42   Tumor suppressor gene product Apc  
ENSP00000466173   7.59e-30   127-194   Tumor suppressor gene product Apc  
ENSP00000466803   2.62e-16   127-170   Tumor suppressor gene product Apc  
ENSP00000467073   1.83e-44   127-234   Tumor suppressor gene product Apc  

Pan troglodytes 76_2.1.4 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPTRP00000017343   7.45e-44   127-234   Tumor suppressor gene product Apc  
ENSPTRP00000029327   1.31e-44   130-239   Tumor suppressor gene product Apc  

Gorilla gorilla 76_3.1 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGGOP00000002782   8.5e-44   127-234   Tumor suppressor gene product Apc  
ENSGGOP00000005846   5.89e-42   133-244   Tumor suppressor gene product Apc  
ENSGGOP00000018390   1.31e-44   130-239   Tumor suppressor gene product Apc  
ENSGGOP00000023994   7.98e-44   127-234   Tumor suppressor gene product Apc  

Pongo abelii 76_2 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPPYP00000010458   1.96e-46   228-334   Tumor suppressor gene product Apc  
ENSPPYP00000017538   1.31e-44   130-239   Tumor suppressor gene product Apc  
ENSPPYP00000024042   1.31e-44   130-239   Tumor suppressor gene product Apc  

Nomascus leucogenys 76_1.0 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSNLEP00000014057   1.31e-44   130-239   Tumor suppressor gene product Apc  
ENSNLEP00000024353   1.31e-44   130-239   Tumor suppressor gene product Apc  
 
Weak hits:
ENSNLEP00000001991   0.0497   206-231   Tumor suppressor gene product Apc  

Papio anubis 76 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPANP00000001111   1.31e-44   130-239   Tumor suppressor gene product Apc  
ENSPANP00000012026   2.75e-46   230-336   Tumor suppressor gene product Apc  
ENSPANP00000017821   2.48e-43   127-234   Tumor suppressor gene product Apc  

Macaca mulatta 76_1 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMMUP00000000446   1.31e-44   130-239   Tumor suppressor gene product Apc  
ENSMMUP00000004073   5.36e-38   127-221   Tumor suppressor gene product Apc  
ENSMMUP00000004075   1.83e-42   127-237   Tumor suppressor gene product Apc  

Callithrix jacchus 76_3.2.1 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCJAP00000010333   2.48e-41   127-235   Tumor suppressor gene product Apc  
ENSCJAP00000030358   1.31e-44   130-239   Tumor suppressor gene product Apc  
ENSCJAP00000030372   3.27e-42   133-243   Tumor suppressor gene product Apc  
ENSCJAP00000043643   1.31e-44   130-239   Tumor suppressor gene product Apc  

Otolemur garnettii 76_3 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOGAP00000015676   8.5e-44   127-234   Tumor suppressor gene product Apc  
ENSOGAP00000015762   3.27e-42   131-241   Tumor suppressor gene product Apc  
ENSOGAP00000017649   3.27e-42   131-241   Tumor suppressor gene product Apc  

Microcebus murinus 76_1 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMICP00000000364   3.14e-32   2-83   Tumor suppressor gene product Apc  
ENSMICP00000014689   0.000000000000275   127-169   Tumor suppressor gene product Apc  
 
Weak hits:
ENSMICP00000009780   0.0196   551-606   Tumor suppressor gene product Apc  

Rattus norvegicus 76_5.0 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSRNOP00000027691   1.03e-44   128-237   Tumor suppressor gene product Apc  
ENSRNOP00000045757   7.19e-43   127-234   Tumor suppressor gene product Apc  
 
Weak hits:
ENSRNOP00000020354   0.0889   651-686   Tumor suppressor gene product Apc  

Mus musculus 76_38 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMUSP00000020349   1.96e-45   127-233   Tumor suppressor gene product Apc  
ENSMUSP00000064214   4.32e-46   128-237   Tumor suppressor gene product Apc  
ENSMUSP00000078337   1.03e-44   128-237   Tumor suppressor gene product Apc  
ENSMUSP00000100996   1.96e-45   151-257   Tumor suppressor gene product Apc  
ENSMUSP00000111447   1.02e-44   128-237   Tumor suppressor gene product Apc  
ENSMUSP00000127131   5.49e-37   138-224   Tumor suppressor gene product Apc  
 
Weak hits:
ENSMUSP00000028855   0.0107   653-696   Tumor suppressor gene product Apc  
ENSMUSP00000099503   0.0106   653-696   Tumor suppressor gene product Apc  

Dipodomys ordii 76_1 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSDORP00000009072   1.57e-43   127-234   Tumor suppressor gene product Apc  
ENSDORP00000009578   6.8e-44   130-239   Tumor suppressor gene product Apc  
 
Weak hits:
ENSDORP00000014269   0.012   487-526   Tumor suppressor gene product Apc  

Ictidomys tridecemlineatus 76_2 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSSTOP00000017587   1.18e-45   151-257   Tumor suppressor gene product Apc  

Heterocephalus glaber v1.7-2 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
HGL_H00000233607   8.63e-39   127-234   Tumor suppressor gene product Apc  
HGL_H00000257430   1.31e-44   130-239   Tumor suppressor gene product Apc  

Cavia porcellus 76_3 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCPOP00000001434   1.96e-42   130-241   Tumor suppressor gene product Apc  
ENSCPOP00000019601   4.84e-46   127-233   Tumor suppressor gene product Apc  

Oryctolagus cuniculus 76_2 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOCUP00000013423   3.01e-42   133-243   Tumor suppressor gene product Apc  
ENSOCUP00000026920   1.28e-44   130-239   Tumor suppressor gene product Apc  

Ochotona princeps 76 has 2 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOPRP00000005659   2.88e-41   127-234   Tumor suppressor gene product Apc  
  3.14e-18   446-506   Tumor suppressor gene product Apc  

Tupaia belangeri 76 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTBEP00000014109   5.75e-38   144-238   Tumor suppressor gene product Apc  

Sus scrofa 76_10.2 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSSSCP00000021594   1.19e-43   127-234   Tumor suppressor gene product Apc  

Bos taurus 76_3.1 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSBTAP00000025099   9.94e-44   131-239   Tumor suppressor gene product Apc  
ENSBTAP00000035274   1.19e-43   127-234   Tumor suppressor gene product Apc  

Ovis aries 76_3.1 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOARP00000012754   9.68e-44   126-233   Tumor suppressor gene product Apc  
ENSOARP00000017325   2.35e-41   133-243   Tumor suppressor gene product Apc  

Vicugna pacos 76_1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSVPAP00000005568   9.94e-44   131-239   Tumor suppressor gene product Apc  

Tursiops truncatus 76_1 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTTRP00000001593   9.94e-44   131-239   Tumor suppressor gene product Apc  
ENSTTRP00000013628   1.83e-43   122-229   Tumor suppressor gene product Apc  

Mustela putorius furo 76_1.0 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMPUP00000008129   1.31e-44   345-451   Tumor suppressor gene product Apc  
ENSMPUP00000012597   7.32e-44   131-239   Tumor suppressor gene product Apc  

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Select to display   Genome       Domains   Proteins
No Yes ALL   2178 2178
No Yes Homo sapiens 76_38 Human 12 12
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 2 2
No Yes Gorilla gorilla 76_3.1 Western gorilla 4 4
No Yes Pongo abelii 76_2 Sumatran orangutan 3 3
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 2 2
No Yes Papio anubis 76 Olive baboon 3 3
No Yes Macaca mulatta 76_1 Rhesus monkey 3 3
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 4 4
No Yes Otolemur garnettii 76_3 Small-eared galago 3 3
No Yes Microcebus murinus 76_1 Gray mouse lemur 2 2
No Yes Rattus norvegicus 76_5.0 Norway rat 2 2
No Yes Mus musculus 76_38 House mouse 6 6
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 2 2
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 1 1
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 2 2
No Yes Cavia porcellus 76_3 Domestic guinea pig 2 2
No Yes Oryctolagus cuniculus 76_2 Rabbit 2 2
No Yes Ochotona princeps 76 American pika 2 1
No Yes Tupaia belangeri 76 Northern tree shrew 1 1
No Yes Sus scrofa 76_10.2 Pig 1 1
No Yes Bos taurus 76_3.1 Cattle 2 2
No Yes Ovis aries 76_3.1 Sheep 2 2
No Yes Vicugna pacos 76_1 Alpaca 1 1
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 2 2
No Yes Mustela putorius furo 76_1.0 Domestic ferret 2 2
No Yes Ailuropoda melanoleuca 76_1 Giant panda 2 2
No Yes Canis familiaris 76_3.1 Dog 1 1
No Yes Felis catus 76_6.2 Domestic cat 1 1
No Yes Equus caballus 76_2 Horse 1 1
No Yes Myotis lucifugus 76_2.0 Little brown bat 2 2
No Yes Pteropus vampyrus 76_1 Large flying fox 1 1
No Yes Sorex araneus 76_1 European shrew 1 1
No Yes Erinaceus europaeus 76 Western European hedgehog 1 1
No Yes Procavia capensis 76_1 Cape rock hyrax 2 2
No Yes Loxodonta africana 76_3 African savanna elephant 3 3
No Yes Echinops telfairi 76 Small Madagascar hedgehog 1 1
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 2 2
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 1 1
No Yes Macropus eugenii 76_1.0 Tammar wallaby 2 2
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 2 2
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 2 2
No Yes Ornithorhynchus anatinus 76_5 Platypus 2 2
No Yes Saccoglossus kowalevskii v3.0   1 1
No Yes Meleagris gallopavo 76_2 Turkey 1 1
No Yes Gallus gallus 76_4 Chicken 2 2
No Yes Anas platyrhynchos 76_1.0 Mallard 1 1
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 1 1
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 2 2
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 2 2
No Yes Anolis carolinensis 76_2.0 Green anole 1 1
No Yes Xenopus laevis African clawed frog 3 3
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 2 2
No Yes Latimeria chalumnae 76_1 Coelacanth 2 2
No Yes Lepisosteus oculatus 76 Spotted gar 3 3
No Yes Gadus morhua 76_1 Atlantic cod 2 2
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 3 3
No Yes Takifugu rubripes 76_4 Torafugu 8 8
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 2 2
No Yes Oryzias latipes 76_1 Japanese medaka 2 2
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 2 2
No Yes Poecilia formosa 76 Amazon molly 2 2
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 2 2
No Yes Astyanax mexicanus 76 Mexican tetra 1 1
No Yes Danio rerio 76_9 Zebrafish 4 4
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 1 1
No Yes Crassostrea gigas 22 Pacific oyster 1 1
No Yes Lottia gigantea Owl limpet 1 1
No Yes Capitella sp. I   1 1
No Yes Strigamia maritima 22   1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 1 1
No Yes Oryza sativa v193 Rice 1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 4 4
No Yes Homo sapiens 75_37 (old version GRC) Human 12 12
No Yes Homo sapiens (NCBI version) Human 4 4
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 2 2
No Yes Homo sapiens 69_37 Human 3 3
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 2 2
No Yes Gorilla gorilla 69_3.1 Western gorilla 2 2
No Yes Pongo abelii 69_2 Sumatran orangutan 2 2
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 1 1
No Yes Macaca mulatta 69_1 Rhesus monkey 2 2
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 2 2
No Yes Otolemur garnettii 69_3 Small-eared galago 2 2
No Yes Microcebus murinus 69_1 Gray mouse lemur 2 2
No Yes Rattus norvegicus 69_3.4 Norway rat 2 2
No Yes Mus musculus 69_38 House mouse 2 2
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 2 2
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 1 1
No Yes Cavia porcellus 69_3 Domestic guinea pig 2 2
No Yes Oryctolagus cuniculus 69_2 Rabbit 1 1
No Yes Ochotona princeps 69 American pika 2 1
No Yes Tupaia belangeri 69 Northern tree shrew 1 1
No Yes Sus scrofa 69_10.2 Pig 1 1
No Yes Bos taurus 69_3.1 Cattle 2 2
No Yes Vicugna pacos 69_1 Alpaca 1 1
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 2 2
No Yes Mustela putorius furo 69_1.0 Domestic ferret 2 2
No Yes Ailuropoda melanoleuca 69_1 Giant panda 2 2
No Yes Canis familiaris 69_3.1 Dog 1 1
No Yes Felis catus 69 Domestic cat 1 1
No Yes Equus caballus 69_2 Horse 1 1
No Yes Myotis lucifugus 69_2.0 Little brown bat 2 2
No Yes Pteropus vampyrus 69_1 Large flying fox 1 1
No Yes Sorex araneus 69_1 European shrew 1 1
No Yes Erinaceus europaeus 69 Western European hedgehog 1 1
No Yes Procavia capensis 69_1 Cape rock hyrax 2 2
No Yes Loxodonta africana 69_3 African savanna elephant 2 2
No Yes Echinops telfairi 69 Small Madagascar hedgehog 1 1
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 1 1
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 1 1
No Yes Macropus eugenii 69_1.0 Tammar wallaby 2 2
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 2 2
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 2 2
No Yes Ornithorhynchus anatinus 69_5 Platypus 2 2
No Yes Meleagris gallopavo 69_2 Turkey 1 1
No Yes Gallus gallus 69_2 Chicken 1 1
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 1 1
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 2 2
No Yes Anolis carolinensis 69_2.0 Green anole 1 1
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 2 2
No Yes Latimeria chalumnae 69_1 Coelacanth 2 2
No Yes Gadus morhua 69_1 Atlantic cod 2 2
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 2 2
No Yes Takifugu rubripes 69_4 Torafugu 2 2
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 2 2
No Yes Oryzias latipes 69_1 Japanese medaka 2 2
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 2 2
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 2 2
No Yes Danio rerio 69_9 Zebrafish 2 2
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes NCBI 2017_08 genome   1312 1301
No Yes STRING v9.0.5 (STRING)   44 44
No Yes Uniprot 2018_03 genome   435 432
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   1 1
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   2 2
No Yes TargetDB (Targets)   2 2

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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