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ssDNA viruses superfamily domain assignments
in
Pristionchus pacificus

Network of domain occurrence in all genomes



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Select to display   Genome       Domains   Proteins
No Yes ALL   16760 16760
No Yes Rattus norvegicus 76_5.0 Norway rat 1 1
No Yes Linepithema humile v1.1 Argentine ant 1 1
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 2 2
No Yes Rhodnius prolixus 22   3 3
No Yes Ixodes scapularis (Preliminary) Black-legged tick 1 1
No Yes Heterobasidion annosum   2 2
No Yes Pinus taeda Loblolly pine 3 1
No Yes Picea abies Norway spruce 1 1
No Yes Capsella rubella v183   1 1
No Yes Glycine max v109 Soybean 1 1
No Yes Fragaria vesca Wild strawberry 2 2
No Yes Linum usitatissimum v200 Flax 1 1
No Yes Aquilegia coerulea v195   1 1
No Yes Triticum aestivum 22 Bread wheat 1 1
No Yes Aegilops tauschii 22   1 1
No Yes Brachypodium distachyon Stiff brome 1 1
No Yes Oryza barthii 22 African wild rice 1 1
No Yes Oryza meridionalis 22   1 1
No Yes Oryza glumaepatula 22   1 1
No Yes Oryza nivara 22   1 1
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 1 1
No Yes Oryza sativa v193 Rice 1 1
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 2 2
No Yes Panicum virgatum v202 Switchgrass 2 2
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays subsp. mays Maize 2 2
No Yes Zea mays v181 Maize 2 2
No Yes Sorghum bicolor Sorghum 1 1
No Yes Hordeum vulgare 22 Domesticated barley 1 1
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Chlamydophila pneumoniae AR39   1 1
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   5 5
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   3 3
No Yes Dump bottom (Dump bottom) (meta-genome)   3 3
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   3 3
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   1 1
No Yes NCBI 2017_08 genome   1974 1953
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   7 7
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Termite Protist Endosymbiont Community (meta-genome)   2 2
No Yes Uniprot 2018_03 genome   10058 10023
No Yes Global Ocean Sampling Expedition (GOS)   134 134
No Yes NCBI plasmid sequences (Plasmids)   2 2
No Yes NCBI viral sequences (Viral)   142 142
No Yes PDB chains (SCOP 1.75) (PDB)   20 20
No Yes Protein Data Bank (all PDB sequenc)   879 879
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   921 921
No Yes UniProt viral sequences (Viral)   2522 2522

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