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Collagen-binding domain superfamily domain assignments
in
Clostridium perfringens ATCC 13124

Assignment details

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Clostridium perfringens ATCC 13124 has 2 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|110798785|ref|YP_694630.1|   1.09e-28   989-1101   Collagen-binding domain  
  1.83e-28   863-975   Collagen-binding domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   22032 22032
No Yes Proterospongia sp. ATCC 50818   7 4
No Yes Monosiga brevicollis   3 3
No Yes Gossypium raimondii v221   1 1
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 1 1
No Yes Physcomitrella patens   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Theileria parva   1 1
No Yes Leptolyngbya sp. PCC 7376   13 1
No Yes Pseudanabaena sp. PCC 7367   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Microcoleus sp. PCC 7113   3 3
No Yes Trichodesmium erythraeum IMS101   80 22
No Yes Geitlerinema sp. PCC 7407   1 1
No Yes Gloeocapsa sp. PCC 7428   3 2
No Yes Halothece sp. PCC 7418   8 3
No Yes Microcystis aeruginosa NIES-843   4 3
No Yes Gloeobacter violaceus PCC 7421   2 1
No Yes Rivularia sp. PCC 7116   5 4
No Yes Calothrix sp. PCC 7507   2 1
No Yes Anabaena variabilis ATCC 29413   9 2
No Yes Nostoc sp. PCC 7107   8 2
No Yes Nostoc punctiforme PCC 73102   2 1
No Yes Nostoc sp. PCC 7120   10 5
No Yes Nostoc sp. PCC 7524   4 1
No Yes Anabaena sp. 90   5 3
No Yes Stackebrandtia nassauensis DSM 44728   1 1
No Yes Streptosporangium roseum DSM 43021   2 2
No Yes Kribbella flavida DSM 17836   1 1
No Yes Actinoplanes sp. SE50/110   1 1
No Yes Intrasporangium calvum DSM 43043   1 1
No Yes Cellulomonas fimi ATCC 484   1 1
No Yes Caldilinea aerophila DSM 14535 = NBRC 104270   4 4
No Yes Anaerolinea thermophila UNI-1   1 1
No Yes Herpetosiphon aurantiacus DSM 785   4 4
No Yes Chloroflexus sp. MS-G   1 1
No Yes Chloroflexus sp. Y-400-fl   9 2
No Yes Chloroflexus aggregans DSM 9485   1 1
No Yes Chloroflexus aurantiacus J-10-fl   9 2
No Yes Deinococcus gobiensis I-0   3 3
No Yes Deinococcus deserti VCD115   1 1
No Yes Deinococcus maricopensis DSM 21211   4 4
No Yes Deinococcus geothermalis DSM 11300   2 2
No Yes Deinococcus proteolyticus MRP   2 2
No Yes Deinococcus radiodurans R1   3 3
No Yes Oceanithermus profundus DSM 14977   2 1
No Yes Meiothermus ruber DSM 1279   1 1
No Yes Thermus sp. CCB_US3_UF1   1 1
No Yes Clostridium clariflavum DSM 19732   6 2
No Yes Clostridium thermocellum ATCC 27405   3 1
No Yes Thermincola potens JR   2 1
No Yes Eubacterium limosum KIST612   1 1
No Yes Clostridium phytofermentans ISDg   1 1
No Yes [Ruminococcus] obeum   1 1
No Yes Eubacterium rectale M104/1   1 1
No Yes Eubacterium rectale ATCC 33656   3 1
No Yes Roseburia hominis A2-183   1 1
No Yes Roseburia intestinalis   7 3
No Yes Clostridium sp. BNL1100   2 1
No Yes Clostridium novyi NT   2 1
No Yes Clostridium tetani E88   3 2
No Yes Clostridium perfringens ATCC 13124   2 1
No Yes Clostridium cellulovorans 743B   11 3
No Yes Clostridium botulinum A str. ATCC 3502   5 2
No Yes Mahella australiensis 50-1 BON   2 2
No Yes Thermosediminibacter oceani DSM 16646   1 1
No Yes Caldicellulosiruptor kronotskyensis 2002   1 1
No Yes Caldicellulosiruptor kristjanssonii 177R1B   1 1
No Yes Thermoanaerobacter mathranii subsp. mathranii str. A3   1 1
No Yes Thermoanaerobacter sp. X514   1 1
No Yes Thermoanaerobacter italicus Ab9   1 1
No Yes Thermoanaerobacter wiegelii Rt8.B1   1 1
No Yes Lactobacillus crispatus ST1   1 1
No Yes Lactobacillus amylovorus GRL1118   2 2
No Yes Lactobacillus helveticus DPC 4571   1 1
No Yes Lactobacillus acidophilus 30SC   1 1
No Yes Streptococcus agalactiae A909   1 1
No Yes Exiguobacterium sp. MH3   3 2
No Yes Exiguobacterium sp. AT1b   5 2
No Yes Exiguobacterium sibiricum 255-15   2 1
No Yes Brevibacillus brevis NBRC 100599   9 5
No Yes Paenibacillus sp. JDR-2   2 1
No Yes Paenibacillus terrae HPL-003   3 3
No Yes Paenibacillus mucilaginosus 3016   2 1
No Yes Paenibacillus polymyxa M1   3 3
No Yes Geobacillus thermoglucosidasius C56-YS93   1 1
No Yes Lysinibacillus sphaericus C3-41   2 1
No Yes Anoxybacillus flavithermus WK1   1 1
No Yes Geobacillus sp. WCH70   4 2
No Yes Halobacillus halophilus DSM 2266   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Bacillus halodurans C-125   1 1
No Yes Bacillus weihenstephanensis KBAB4   4 4
No Yes Bacillus thuringiensis str. Al Hakam   3 3
No Yes Bacillus cereus 03BB102   3 3
No Yes Bacillus anthracis str. A0248   4 4
No Yes Bacillus megaterium DSM 319   2 2
No Yes Chlorobium chlorochromatii CaD3   3 1
No Yes Haliscomenobacter hydrossis DSM 1100   2 1
No Yes Niastella koreensis GR20-10   4 4
No Yes Chitinophaga pinensis DSM 2588   2 2
No Yes Riemerella anatipestifer ATCC 11845 = DSM 15868   1 1
No Yes Flavobacterium psychrophilum JIP02/86   1 1
No Yes Isosphaera pallida ATCC 43644   1 1
No Yes Planctomyces brasiliensis DSM 5305   2 1
No Yes Planctomyces limnophilus DSM 3776   1 1
No Yes Rhodopirellula baltica SH 1   3 3
No Yes Pirellula staleyi DSM 6068   3 3
No Yes Brachyspira murdochii DSM 12563   2 2
No Yes Brachyspira intermedia PWS/A   2 2
No Yes Brachyspira pilosicoli 95/1000   1 1
No Yes Brachyspira hyodysenteriae WA1   1 1
No Yes Treponema azotonutricium ZAS-9   2 1
No Yes Treponema primitia ZAS-2   5 2
No Yes Spirochaeta thermophila DSM 6192   2 1
No Yes Candidatus Solibacter usitatus Ellin6076   5 4
No Yes Bacteriovorax marinus SJ   2 1
No Yes Desulfatibacillum alkenivorans AK-01   3 2
No Yes Desulfobacterium autotrophicum HRM2   1 1
No Yes Desulfovibrio africanus str. Walvis Bay   1 1
No Yes Haliangium ochraceum DSM 14365   1 1
No Yes Sorangium cellulosum 'So ce 56'   1 1
No Yes Stigmatella aurantiaca DW4/3-1   1 1
No Yes Corallococcus coralloides DSM 2259   1 1
No Yes Myxococcus xanthus DK 1622   1 1
No Yes Myxococcus fulvus HW-1   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Rubrivivax gelatinosus IL144   1 1
No Yes Leptothrix cholodnii SP-6   2 2
No Yes Nitrosospira multiformis ATCC 25196   2 1
No Yes Nitrosomonas europaea ATCC 19718   2 1
No Yes Pseudovibrio sp. FO-BEG1   2 2
No Yes Rhodobacter capsulatus SB 1003   1 1
No Yes Paracoccus denitrificans PD1222   1 1
No Yes Azospirillum lipoferum 4B   2 2
No Yes Azospirillum sp. B510   1 1
No Yes Azospirillum brasilense Sp245   3 3
No Yes Vibrio sp. Ex25   2 2
No Yes Vibrio harveyi ATCC BAA-1116   1 1
No Yes Vibrio splendidus LGP32   1 1
No Yes Vibrio anguillarum 775   2 2
No Yes Vibrio furnissii NCTC 11218   1 1
No Yes Vibrio vulnificus MO6-24/O   1 1
No Yes Vibrio cholerae O395   1 1
No Yes Ferrimonas balearica DSM 9799   1 1
No Yes Shewanella sediminis HAW-EB3   1 1
No Yes Shewanella denitrificans OS217   1 1
No Yes Shewanella baltica OS185   1 1
No Yes Shewanella woodyi ATCC 51908   1 1
No Yes Shewanella amazonensis SB2B   1 1
No Yes Shewanella violacea DSS12   2 2
No Yes Shewanella putrefaciens CN-32   1 1
No Yes Colwellia psychrerythraea 34H   1 1
No Yes Pseudoalteromonas sp. SM9913   1 1
No Yes Kangiella koreensis DSM 16069   4 4
No Yes Methylomonas methanica MC09   2 2
No Yes Rhodanobacter denitrificans   2 1
No Yes Xanthomonas campestris pv. campestris str. B100   1 1
No Yes Allochromatium vinosum DSM 180   1 1
No Yes Nitrosococcus watsonii C-113   1 1
No Yes Nitrosococcus halophilus Nc4   1 1
No Yes Nitrosococcus oceani ATCC 19707   1 1
No Yes Dickeya zeae Ech1591   1 1
No Yes Klebsiella oxytoca E718   1 1
No Yes Pseudomonas sp. TKP   1 1
No Yes Pseudomonas fluorescens SBW25   1 1
No Yes Methanosaeta harundinacea 6Ac   3 2
No Yes Methanosarcina acetivorans C2A   1 1
No Yes Methanosarcina barkeri str. Fusaro   1 1
No Yes Aciduliprofundum boonei T469   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Chamaesiphon minutus PCC 6605   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-P   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-N   1 1
No Yes Synechocystis sp. PCC 6803 substr. GT-I   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Dactylococcopsis salina PCC 8305   11 7
No Yes Synechococcus sp. CC9605   1 1
No Yes Synechococcus sp. WH 8102   2 1
No Yes Crinalium epipsammum PCC 9333   1 1
No Yes Oscillatoria nigro-viridis PCC 7112   7 6
No Yes Oscillatoria acuminata PCC 6304   17 8
No Yes Arthrospira platensis NIES-39   40 15
No Yes Cyanothece sp. PCC 7822   1 1
No Yes Cyanothece sp. PCC 7424   1 1
No Yes Cyanothece sp. ATCC 51142   1 1
No Yes Cyanobacterium aponinum PCC 10605   1 1
No Yes Cyanobacterium stanieri PCC 7202   1 1
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   5 3
No Yes Stanieria cyanosphaera PCC 7437   1 1
No Yes Calothrix parietina Calothrix sp. PCC 6303   3 3
No Yes Cylindrospermum stagnale PCC 7417   2 1
No Yes Anabaena cylindrica PCC 7122   5 4
No Yes Thermus thermophilus JL-18   1 1
No Yes Thermus thermophilus HB8   1 1
No Yes Clostridium thermocellum DSM 1313   3 1
No Yes Roseburia intestinalis XB6B4   6 2
No Yes Clostridium sp. SY8519   1 1
No Yes Clostridium saccharoperbutylacetonicum N1-4(HMT)   3 3
No Yes Clostridium tetani genome 12124569   3 2
No Yes Clostridium perfringens SM101   2 1
No Yes Clostridium perfringens str. 13   2 1
No Yes Clostridium botulinum H04402 065   5 2
No Yes Clostridium botulinum BKT015925   2 1
No Yes Clostridium botulinum F str. 230613   2 1
No Yes Clostridium botulinum F str. Langeland   5 2
No Yes Clostridium botulinum E3 str. Alaska E43   3 1
No Yes Clostridium botulinum B1 str. Okra   5 2
No Yes Clostridium botulinum Ba4 str. 657   4 2
No Yes Clostridium botulinum A2 str. Kyoto   5 2
No Yes Clostridium botulinum A3 str. Loch Maree   5 2
No Yes Clostridium botulinum A str. Hall   3 1
No Yes Clostridium botulinum A str. ATCC 19397   3 1
No Yes Thermoanaerobacter sp. X513   1 1
No Yes Lactobacillus amylovorus GRL 1112   1 1
No Yes Lactobacillus helveticus R0052   1 1
No Yes Lactobacillus helveticus H10   1 1
No Yes Lactobacillus helveticus CNRZ32   1 1
No Yes Lactobacillus acidophilus La-14   1 1
No Yes Lactobacillus acidophilus NCFM   1 1
No Yes Streptococcus agalactiae ILRI112   1 1
No Yes Streptococcus agalactiae ILRI005   1 1
No Yes Streptococcus agalactiae 09mas018883   1 1
No Yes Streptococcus agalactiae SA20-06   1 1
No Yes Streptococcus agalactiae GD201008-001   1 1
No Yes Streptococcus agalactiae NEM316   1 1
No Yes Streptococcus agalactiae 2603V/R   1 1
No Yes Thermobacillus composti KWC4   2 1
No Yes Paenibacillus mucilaginosus KNP414   2 1
No Yes Paenibacillus mucilaginosus K02   2 1
No Yes Paenibacillus larvae subsp. larvae DSM 25430   6 4
No Yes Paenibacillus polymyxa CR1   3 3
No Yes Paenibacillus polymyxa SC2   3 3
No Yes Paenibacillus polymyxa E681   3 3
No Yes Geobacillus sp. Y4.1MC1   1 1
No Yes Bacillus licheniformis 9945A   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Bacillus cereus subsp. cytotoxis NVH 391-98   1 1
No Yes Bacillus toyonensis BCT-7112   4 4
No Yes Bacillus thuringiensis HD-771   3 3
No Yes Bacillus thuringiensis HD-789   3 3
No Yes Bacillus thuringiensis MC28   4 4
No Yes Bacillus thuringiensis serovar chinensis CT-43   4 4
No Yes Bacillus thuringiensis YBT-1518   7 7
No Yes Bacillus thuringiensis Bt407   5 5
No Yes Bacillus thuringiensis serovar konkukian str. 97-27   3 3
No Yes Bacillus thuringiensis serovar kurstaki str. HD73   5 5
No Yes Bacillus thuringiensis BMB171   5 5
No Yes Bacillus thuringiensis serovar finitimus YBT-020   3 3
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   6 6
No Yes Bacillus cereus FRI-35   3 3
No Yes Bacillus cereus biovar anthracis str. CI   3 3
No Yes Bacillus cereus AH820   3 3
No Yes Bacillus cereus AH187   2 2
No Yes Bacillus cereus B4264   4 4
No Yes Bacillus cereus G9842   3 3
No Yes Bacillus cereus Q1   2 2
No Yes Bacillus cereus F837/76   3 3
No Yes Bacillus cereus NC7401   2 2
No Yes Bacillus cereus E33L   4 4
No Yes Bacillus cereus ATCC 14579   5 5
No Yes Bacillus cereus ATCC 10987   3 3
No Yes Bacillus anthracis str. H9401   4 4
No Yes Bacillus anthracis str. CDC 684   4 4
No Yes Bacillus anthracis str. 'Ames Ancestor'   4 4
No Yes Bacillus anthracis str. Sterne   4 4
No Yes Bacillus anthracis str. Ames   4 4
No Yes Bacillus coagulans 36D1   4 1
No Yes Prevotella dentalis DSM 3688   6 1
No Yes Riemerella anatipestifer RA-CH-2   1 1
No Yes Riemerella anatipestifer RA-CH-1   1 1
No Yes Riemerella anatipestifer RA-GD   1 1
No Yes Riemerella anatipestifer ATCC 11845 = DSM 15868   1 1
No Yes Singulisphaera acidiphila DSM 18658   2 2
No Yes Brachyspira pilosicoli WesB   1 1
No Yes Brachyspira pilosicoli B2904   1 1
No Yes Brachyspira pilosicoli P43/6/78   2 1
No Yes Spirochaeta thermophila DSM 6578   1 1
No Yes Sorangium cellulosum So0157-2   1 1
No Yes Anaeromyxobacter sp. K   1 1
No Yes Myxococcus stipitatus DSM 14675   2 2
No Yes Variovorax paradoxus B4   1 1
No Yes Paracoccus aminophilus JCM 7686   2 2
No Yes Bradyrhizobium oligotrophicum S58   1 1
No Yes Simiduia agarivorans SA1 = DSM 21679   3 3
No Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749   1 1
No Yes Vibrio anguillarum Listonella anguillarum M3   2 2
No Yes Vibrio nigripulchritudo VibrioScope   2 2
No Yes Vibrio vulnificus YJ016   1 1
No Yes Vibrio cholerae LMA3984-4   1 1
No Yes Vibrio cholerae M66-2   1 1
No Yes Vibrio cholerae O395   1 1
No Yes Vibrio cholerae IEC224   1 1
No Yes Vibrio cholerae O1 str. 2010EL-1786   1 1
No Yes Vibrio cholerae MJ-1236   1 1
No Yes Vibrio cholerae O1 biovar El Tor str. N16961   1 1
No Yes Shewanella baltica BA175   1 1
No Yes Shewanella baltica OS678   1 1
No Yes Shewanella baltica OS223   1 1
No Yes Shewanella baltica OS195   1 1
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   1 1
No Yes Xanthomonas axonopodis pv. citrumelo F1   1 1
No Yes Xanthomonas campestris pv. raphani 756C   1 1
No Yes Xanthomonas campestris pv. campestris str. 8004   1 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   1 1
No Yes Thioalkalivibrio nitratireducens DSM 14787   5 2
No Yes Klebsiella oxytoca KCTC 1686   1 1
No Yes Archaeoglobus sulfaticallidus PM70-1   1 1
No Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC)   1 1
No Yes 2_050719S (meta-genome)   4 4
No Yes 2_Base_of_chrolophyll_max (meta-genome)   1 1
No Yes 3_050719R (meta-genome)   15 15
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   14 13
No Yes 5_050719P (meta-genome)   18 16
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Anaerobic methane oxidation (AOM) community from Eel River Basin sediment, California (meta-genome)   2 2
No Yes Bath Hot Springs, planktonic community (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   1 1
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   3 3
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   3 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   4 4
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   4 3
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   4 4
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   3 3
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   9 8
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   10 10
No Yes Human Gut Community Subject 8 (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   2 2
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   2 2
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   25 25
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   7 7
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   9 9
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   6 6
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   3 3
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   3 3
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   3 3
No Yes NCBI 2017_08 genome   12196 10172
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   8 8
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   5 3
No Yes Protozoadb 2010_08 (Protozoadb)   2 2
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   18 15
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   5 4
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   1 1
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   2 2
No Yes Sludge/US, Phrap Assembly (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   14 13
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   18 18
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   8 8
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   8 8
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   17 17
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   15 15
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   12 12
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   366 226
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   1 1
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   12 12
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   7311 5745
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   1 1
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   5 4
No Yes Global Ocean Sampling Expedition (GOS)   284 219
No Yes NCBI plasmid sequences (Plasmids)   19 16
No Yes NCBI viral sequences (Viral)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   18 17
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   49 49
No Yes TargetDB (Targets)   30 21

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