SUPERFAMILY 1.75 HMM library and genome assignments server

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Myosin rod fragments superfamily domain assignments
in
Sinorhizobium medicae WSM419


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Select to display   Genome       Domains   Proteins
No Yes ALL   123167 123167
No Yes Homo sapiens 76_38 Human 243 82
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 82 27
No Yes Gorilla gorilla 76_3.1 Western gorilla 141 45
No Yes Pongo abelii 76_2 Sumatran orangutan 86 27
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 77 26
No Yes Papio anubis 76 Olive baboon 84 26
No Yes Macaca mulatta 76_1 Rhesus monkey 137 49
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 130 44
No Yes Otolemur garnettii 76_3 Small-eared galago 78 22
No Yes Microcebus murinus 76_1 Gray mouse lemur 72 19
No Yes Rattus norvegicus 76_5.0 Norway rat 84 27
No Yes Mus musculus 76_38 House mouse 173 67
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 58 16
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 61 16
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 74 18
No Yes Cavia porcellus 76_3 Domestic guinea pig 51 19
No Yes Oryctolagus cuniculus 76_2 Rabbit 73 24
No Yes Ochotona princeps 76 American pika 52 15
No Yes Tupaia belangeri 76 Northern tree shrew 61 17
No Yes Sus scrofa 76_10.2 Pig 84 31
No Yes Bos taurus 76_3.1 Cattle 81 27
No Yes Ovis aries 76_3.1 Sheep 91 30
No Yes Vicugna pacos 76_1 Alpaca 39 11
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 66 20
No Yes Mustela putorius furo 76_1.0 Domestic ferret 62 26
No Yes Ailuropoda melanoleuca 76_1 Giant panda 85 29
No Yes Canis familiaris 76_3.1 Dog 94 30
No Yes Felis catus 76_6.2 Domestic cat 92 25
No Yes Equus caballus 76_2 Horse 143 37
No Yes Myotis lucifugus 76_2.0 Little brown bat 72 24
No Yes Pteropus vampyrus 76_1 Large flying fox 73 22
No Yes Sorex araneus 76_1 European shrew 51 17
No Yes Erinaceus europaeus 76 Western European hedgehog 57 18
No Yes Procavia capensis 76_1 Cape rock hyrax 65 22
No Yes Loxodonta africana 76_3 African savanna elephant 138 40
No Yes Echinops telfairi 76 Small Madagascar hedgehog 50 20
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 106 37
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 40 12
No Yes Macropus eugenii 76_1.0 Tammar wallaby 59 20
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 77 25
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 49 19
No Yes Ornithorhynchus anatinus 76_5 Platypus 75 29
No Yes Saccoglossus kowalevskii v3.0   200 44
No Yes Petromyzon marinus 76_7.0 Sea lamprey 35 15
No Yes Meleagris gallopavo 76_2 Turkey 100 29
No Yes Gallus gallus 76_4 Chicken 91 27
No Yes Anas platyrhynchos 76_1.0 Mallard 63 20
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 83 25
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 92 28
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 77 25
No Yes Anolis carolinensis 76_2.0 Green anole 73 23
No Yes Xenopus laevis African clawed frog 123 57
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 123 41
No Yes Latimeria chalumnae 76_1 Coelacanth 70 26
No Yes Lepisosteus oculatus 76 Spotted gar 129 42
No Yes Gadus morhua 76_1 Atlantic cod 128 36
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 185 55
No Yes Takifugu rubripes 76_4 Torafugu 272 106
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 144 46
No Yes Oryzias latipes 76_1 Japanese medaka 174 61
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 90 29
No Yes Poecilia formosa 76 Amazon molly 113 27
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 146 50
No Yes Astyanax mexicanus 76 Mexican tetra 100 27
No Yes Danio rerio 76_9 Zebrafish 282 92
No Yes Oikopleura dioica   70 18
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 178 50
No Yes Ciona intestinalis 76 Vase tunicate 32 12
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 17 9
No Yes Adineta vaga   94 29
No Yes Octopus bimaculoides 280   37 24
No Yes Crassostrea gigas 22 Pacific oyster 32 18
No Yes Lottia gigantea Owl limpet 7 7
No Yes Helobdella robusta   11 7
No Yes Capitella sp. I   8 8
No Yes Danaus plexippus OGS1.0 Monarch butterfly 14 6
No Yes Heliconius melpomene Postman butterfly 12 5
No Yes Bombyx mori Domestic silkworm 14 6
No Yes Nasonia vitripennis Jewel wasp 12 4
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 47 17
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 16 7
No Yes Linepithema humile v1.1 Argentine ant 12 5
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 14 7
No Yes Solenopsis invicta v.2.2.3 Red fire ant 15 5
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 18 6
No Yes Atta cephalotes v1.1   13 9
No Yes Camponotus floridanus v3.3 Florida carpenter ant 14 5
No Yes Lucilia cuprina Australian sheep blowfly 15 5
No Yes Drosophila grimshawi 1.3   14 5
No Yes Drosophila willistoni 1.3   14 4
No Yes Drosophila pseudoobscura 2.13   16 5
No Yes Drosophila persimilis 1.3   11 5
No Yes Drosophila suzukii   12 3
No Yes Drosophila yakuba 1.3   18 8
No Yes Drosophila simulans 1.3   8 4
No Yes Drosophila sechellia 1.3   9 3
No Yes Drosophila melanogaster 76_5 Fruit fly 150 34
No Yes Drosophila erecta 1.3   12 3
No Yes Drosophila ananassae 1.3   14 5
No Yes Drosophila virilis 1.2   15 4
No Yes Drosophila mojavensis 1.3   14 4
No Yes Megaselia scalaris 22   7 4
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 32 9
No Yes Culex pipiens quinquefasciatus Southern house mosquito 36 18
No Yes Anopheles darlingi 22 American malaria mosquito 14 7
No Yes Anopheles gambiae 49_3j African malaria mosquito 22 7
No Yes Tribolium castaneum 3.0 Red flour beetle 18 8
No Yes Pediculus humanus corporis (Early assembly) Human body louse 18 6
No Yes Acyrthosiphon pisum Pea aphid 25 5
No Yes Rhodnius prolixus 22   14 4
No Yes Daphnia pulex Common water flea 11 6
No Yes Strigamia maritima 22   19 8
No Yes Sarcoptes scabiei   17 7
No Yes Tetranychus urticae Two-spotted spider mite 20 8
No Yes Ixodes scapularis (Preliminary) Black-legged tick 8 3
No Yes Pristionchus pacificus   39 11
No Yes Meloidogyne incognita Southern root-knot nematode 26 7
No Yes Meloidogyne hapla   4 2
No Yes Onchocerca volvulus 22   32 10
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 42 15
No Yes Caenorhabditis japonica   34 9
No Yes Caenorhabditis brenneri   55 16
No Yes Caenorhabditis remanei   37 12
No Yes Caenorhabditis elegans 76_235 Roundworm 61 21
No Yes Caenorhabditis briggsae 2   37 13
No Yes Trichinella spiralis 22   20 7
No Yes Hymenolepis microstoma   17 7
No Yes Echinococcus multilocularis   15 5
No Yes Echinococcus granulosus   17 7
No Yes Taenia solium Pork tapeworm 13 3
No Yes Schistosoma mansoni   46 14
No Yes Mnemiopsis leidyi Sea walnut 25 11
No Yes Thelohanellus kitauei   7 4
No Yes Acropora digitifera v1.0   17 13
No Yes Nematostella vectensis 1.0 Starlet sea anemone 16 9
No Yes Hydra vulgaris   20 10
No Yes Amphimedon queenslandica   27 14
No Yes Trichoplax adhaerens   1 1
No Yes Proterospongia sp. ATCC 50818   8 6
No Yes Monosiga brevicollis   2 2
No Yes Sphaeroforma arctica JP610   9 4
No Yes Capsaspora owczarzaki ATCC 30864   12 5
No Yes Conidiobolus coronatus NRRL28638 v1.0   2 1
No Yes Mortierella verticillata NRRL 6337   8 4
No Yes Mucor circinelloides   1 1
No Yes Rhizomucor miehei CAU432   2 2
No Yes Ustilago maydis   1 1
No Yes Mixia osmundae IAM 14324 v1.0   1 1
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   1 1
No Yes Rhodotorula graminis WP1 v1.0   1 1
No Yes Sphaerobolus stellatus v1.0   7 6
No Yes Piloderma croceum F 1598 v1.0   3 3
No Yes Coniophora puteana   3 3
No Yes Hydnomerulius pinastri v2.0   2 2
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   3 3
No Yes Pisolithus microcarpus 441 v1.0   2 2
No Yes Pisolithus tinctorius Marx 270 v1.0   2 2
No Yes Scleroderma citrinum Foug A v1.0   3 3
No Yes Coprinopsis cinerea okayama7 130 v3   6 6
No Yes Laccaria bicolor S238N-H82   2 1
No Yes Agaricus bisporus var. bisporus   3 3
No Yes Schizophyllum commune   5 5
No Yes Heterobasidion annosum   2 2
No Yes Gloeophyllum trabeumv1.0   5 2
No Yes Punctularia strigosozonata v1.0   1 1
No Yes Sebacina vermifera MAFF 305830 v1.0   2 2
No Yes Fomitiporia mediterranea v1.0   5 3
No Yes Tulasnella calospora AL13/4D v1.0   4 3
No Yes Fomitopsis pinicolav1.0   3 3
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   3 3
No Yes Phanerochaete chrysosporium RP-78 2.1   3 3
No Yes Dichomitus squalens   2 2
No Yes Trametes versicolor v1.0   1 1
No Yes Tremella mesenterica Witches' butter 1 1
No Yes Daldinia eschscholzii EC12 v1.0   2 2
No Yes Apiospora montagnei NRRL 25634 v1.0   1 1
No Yes Magnaporthe poae ATCC 64411 22   6 6
No Yes Magnaporthe grisea 70-15   3 2
No Yes Podospora anserina   4 2
No Yes Sporotrichum thermophile ATCC 42464   4 2
No Yes Thielavia terrestris NRRL 8126   4 4
No Yes Chaetomium globosum CBS 148.51   7 3
No Yes Neurospora discreta FGSC 8579   1 1
No Yes Neurospora crassa OR74A   5 2
No Yes Verticillium albo-atrum VaMs.102   2 1
No Yes Verticillium dahliae VdLs.17   2 1
No Yes Acremonium alcalophilumv 1.0   4 2
No Yes Glomerella graminicola 22   3 2
No Yes Fusarium graminearum   3 2
No Yes Nectria haematococca mpVI   1 1
No Yes Fusarium oxysporum f. sp. lycopersici 4286   3 3
No Yes Fusarium verticillioides 7600   1 1
No Yes Trichoderma asperellum CBS 433.97 v1.0   1 1
No Yes Trichoderma atroviride   1 1
No Yes Trichoderma citrinoviride v1.0   1 1
No Yes Trichoderma reesei 1.2   2 2
No Yes Trichoderma virens Gv29-8   2 2
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   2 2
No Yes Trichoderma harzianum CBS 226.95 v1.0   2 2
No Yes Botrytis cinerea B05.10   3 3
No Yes Sclerotinia sclerotiorum   2 2
No Yes Blumeria graminis 22   1 1
No Yes Leptosphaeria maculans 22   2 2
No Yes Setosphaeria turcica v1.0   2 2
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 1 1
No Yes Cochliobolus lunatus m118 v2.0   1 1
No Yes Pyrenophora teres f. teres 22   1 1
No Yes Pyrenophora tritici-repentis   1 1
No Yes Stagonospora nodorum   3 3
No Yes Mycosphaerella graminicola IPO323   2 2
No Yes Zasmidium cellare ATCC 36951 v1.0   3 3
No Yes Septoria musiva v1.0   1 1
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   3 2
No Yes Coccidioides posadasii RMSCC 3488   5 4
No Yes Coccidioides immitis RS   5 3
No Yes Ajellomyces dermatitidis SLH14081   2 2
No Yes Histoplasma capsulatum class NAmI strain WU24   3 2
No Yes Microsporum canis CBS 113480   3 3
No Yes Trichophyton equinum CBS 127.97   3 3
No Yes Trichophyton verrucosum HKI 0517   3 2
No Yes Arthroderma benhamiae CBS 112371   2 2
No Yes Trichophyton tonsurans CBS 112818   3 3
No Yes Trichophyton rubrum CBS 118892   2 2
No Yes Uncinocarpus reesii 1704   4 3
No Yes Aspergillus zonatus v1.0   2 2
No Yes Penicillium chrysogenum Wisconsin 54-1255   4 3
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   3 3
No Yes Aspergillus fumigatus Af293   5 4
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus nidulans FGSC A4   2 2
No Yes Aspergillus sydowii v1.0   2 2
No Yes Aspergillus versicolor v1.0   2 2
No Yes Aspergillus glaucus   2 2
No Yes Aspergillus carbonarius ITEM 5010   1 1
No Yes Neosartorya fischeri NRRL 181   5 4
No Yes Aspergillus terreus NIH2624   5 4
No Yes Aspergillus tubingensis v1.0   2 2
No Yes Aspergillus wentii v1.0   4 4
No Yes Aspergillus oryzae RIB40   5 3
No Yes Aspergillus niger 22   6 5
No Yes Aspergillus flavus NRRL3357   5 3
No Yes Aspergillus clavatus NRRL 1   3 3
No Yes Penicillium marneffei ATCC 18224   4 2
No Yes Tuber melanosporum Mel28 22   3 3
No Yes Tuber melanosporum Vittad Perigord truffle 3 3
No Yes Dekkera bruxellensis CBS 2499 v2.0   1 1
No Yes Pichia membranifaciensv1.0   1 1
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   3 3
No Yes Candida dubliniensis CD36   1 1
No Yes Candida albicans SC5314   3 3
No Yes Candida guilliermondii ATCC 6260   4 4
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   1 1
No Yes Debaromyces hansenii   1 1
No Yes Candida lusitaniae ATCC 42720   2 2
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   1 1
No Yes Vanderwaltozyma polyspora DSM 70294   1 1
No Yes Candida glabrata CBS138   1 1
No Yes Ashbya gossypii ATCC 10895   1 1
No Yes Saccharomyces mikatae MIT   1 1
No Yes Saccharomyces bayanus MIT   1 1
No Yes Kluyveromyces lactis   1 1
No Yes Schizosaccharomyces octosporus yFS286   2 1
No Yes Catenaria anguillulae PL171 v1.0   12 6
No Yes Allomyces macrogynus ATCC 38327   8 8
No Yes Spizellomyces punctatus DAOM BR117   12 4
No Yes Dictyostelium discoideum   14 3
No Yes Dictyostelium purpureum   11 1
No Yes Entamoeba dispar 1.2   9 5
No Yes Entamoeba invadens 1.2   28 25
No Yes Entamoeba histolytica 1   5 3
No Yes Selaginella moellendorffii   5 5
No Yes Pinus taeda Loblolly pine 2 2
No Yes Picea abies Norway spruce 5 5
No Yes Theobroma cacao B97-61/B2 v1 Cacao 2 2
No Yes Gossypium raimondii v221   17 17
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 3 3
No Yes Thellungiella halophila v173   1 1
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 6 6
No Yes Capsella rubella v183   4 4
No Yes Arabidopsis lyrata Lyrate rockcress 1 1
No Yes Arabidopsis thaliana 10 Thale cress 6 6
No Yes Medicago truncatula Barrel medic 7 7
No Yes Phaseolus vulgaris v186 French bean 1 1
No Yes Glycine max v109 Soybean 1 1
No Yes Cucumis sativus v122 Cucumber 4 4
No Yes Fragaria vesca Wild strawberry 5 5
No Yes Malus domestica v196 Apple 8 8
No Yes Prunus persica v139 Peach 1 1
No Yes Linum usitatissimum v200 Flax 2 2
No Yes Manihot esculenta v147 Cassava 2 2
No Yes Populus trichocarpa v156 Black cottonwood 3 3
No Yes Vitis vinifera Wine grape 1 1
No Yes Mimulus guttatus v140 Spotted monkey flower 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Actinidia chinensis Hongyang   5 5
No Yes Aquilegia coerulea v195   2 2
No Yes Triticum urartu 22   3 3
No Yes Triticum aestivum 22 Bread wheat 10 10
No Yes Aegilops tauschii 22   1 1
No Yes Brachypodium distachyon Stiff brome 2 2
No Yes Oryza barthii 22 African wild rice 2 2
No Yes Oryza meridionalis 22   5 5
No Yes Oryza glumaepatula 22   8 8
No Yes Oryza glaberrima African rice 12 12
No Yes Oryza punctata 22   4 4
No Yes Oryza nivara 22   4 4
No Yes Oryza brachyantha 22 Malo sina 7 7
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 35 35
No Yes Oryza sativa v193 Rice 32 32
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 3 3
No Yes Panicum virgatum v202 Switchgrass 6 6
No Yes Setaria italica v164 Foxtail millet 4 4
No Yes Zea mays subsp. mays Maize 5 5
No Yes Zea mays v181 Maize 6 6
No Yes Sorghum bicolor Sorghum 5 4
No Yes Musa balbisiana Balbis banana 5 4
No Yes Musa acuminata 22 Wild Malaysian banana 7 5
No Yes Amborella trichopoda 22   5 5
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Asterochloris sp. Cgr/DA1pho v1.0   1 1
No Yes Chlorella variabilis sp. NC64A   2 2
No Yes Chlorella vulgaris   2 2
No Yes Volvox carteri f. nagariensis   7 7
No Yes Volvox carteri v199   7 7
No Yes Chlamydomonas reinhardtii 4.0   7 7
No Yes Ostreococcus sp. RCC809   2 2
No Yes Ostreococcus tauri   1 1
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Cyanidioschyzon merolae strain 10D 22   2 2
No Yes Cyanidioschyzon merolae   2 2
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Thecamonas trahens ATCC 50062   5 3
No Yes Bigelowiella natans CCMP2755 22   1 1
No Yes Giardia lamblia 2.3   3 3
No Yes Cyanophora paradoxa   3 3
No Yes Leishmania mexicana 2.4   15 3
No Yes Leishmania major strain Friedlin   8 3
No Yes Leishmania infantum JPCM5 2.4   8 1
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   20 6
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma cruzi strain CL Brener   1 1
No Yes Trypanosoma congolense 2.4   5 4
No Yes Trypanosoma brucei gambiense v4.1   2 2
No Yes Trypanosoma brucei TREU927 v4.1   4 3
No Yes Ectocarpus siliculosus   1 1
No Yes Aureococcus anophagefferens   2 2
No Yes Pythium arrhenomanes ATCC 12531 22   2 2
No Yes Pythium ultimum v1.7-2   2 2
No Yes Pythium aphanidermatum DAOM BR444 22   2 2
No Yes Pythium irregulare DAOM BR486 22   2 2
No Yes Pythium vexans DAOM BR484 22   3 3
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 5 5
No Yes Phytophthora sojae 1.1   3 3
No Yes Phytophthora infestans T30-4   1 1
No Yes Phytophthora capsici   1 1
No Yes Phaeodactylum tricornutumCCAP 1055/1   1 1
No Yes Fragilariopsis cylindrus   3 3
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Perkinsus marinus ATCC 50983   3 3
No Yes Paramecium tetraurelia   11 10
No Yes Tetrahymena thermophila SB210 1   5 5
No Yes Ichthyophthirius multifiliis strain G5   1 1
No Yes Cryptosporidium muris   1 1
No Yes Cryptosporidium parvum Iowa II   1 1
No Yes Neospora caninum   1 1
No Yes Toxoplasma gondii VEG   1 1
No Yes Toxoplasma gondii ME49   1 1
No Yes Toxoplasma gondii GT1   2 1
No Yes Theileria annulata   3 3
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium vivax SaI-1 7.0   1 1
No Yes Plasmodium knowlesi strain H   1 1
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Symbiodinium minutum clade B1 v1.2   6 6
No Yes Naegleria gruberi   2 2
No Yes Trichomonas vaginalis   28 23
No Yes Guillardia theta CCMP2712 v1.0   8 8
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Leptolyngbya sp. PCC 7376   1 1
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Thermosynechococcus sp. NK55   1 1
No Yes Thermosynechococcus elongatus BP-1   1 1
No Yes Synechococcus sp. PCC 7502   1 1
No Yes Microcoleus sp. PCC 7113   1 1
No Yes Trichodesmium erythraeum IMS101   1 1
No Yes Gloeocapsa sp. PCC 7428   1 1
No Yes Microcystis aeruginosa NIES-843   1 1
No Yes Mycoplasma mycoides subsp. capri LC str. 95010   4 4
No Yes Eggerthella lenta DSM 2243   1 1
No Yes Coriobacterium glomerans PW2   1 1
No Yes Acidothermus cellulolyticus 11B   1 1
No Yes Saccharomonospora viridis DSM 43017   1 1
No Yes Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Thermomicrobium roseum DSM 5159   1 1
No Yes Chloroflexus aggregans DSM 9485   1 1
No Yes Marinithermus hydrothermalis DSM 14884   2 2
No Yes Thermus sp. CCB_US3_UF1   2 2
No Yes Thermus scotoductus SA-01   2 2
No Yes Symbiobacterium thermophilum IAM 14863   1 1
No Yes Clostridium cellulolyticum H10   1 1
No Yes Sulfobacillus acidophilus DSM 10332   1 1
No Yes Desulfotomaculum carboxydivorans CO-1-SRB   1 1
No Yes Acetobacterium woodii DSM 1030   1 1
No Yes Eubacterium eligens ATCC 27750   1 1
No Yes Filifactor alocis ATCC 35896   1 1
No Yes Roseburia hominis A2-183   1 1
No Yes Roseburia intestinalis   1 1
No Yes Syntrophothermus lipocalidus DSM 12680   2 2
No Yes Clostridium sp. BNL1100   1 1
No Yes Coprothermobacter proteolyticus DSM 5265   1 1
No Yes Thermoanaerobacter tengcongensis MB4   1 1
No Yes Thermoanaerobacter mathranii subsp. mathranii str. A3   1 1
No Yes Thermoanaerobacter pseudethanolicus ATCC 33223   1 1
No Yes Thermoanaerobacter sp. X514   1 1
No Yes Thermoanaerobacter italicus Ab9   1 1
No Yes Thermoanaerobacter wiegelii Rt8.B1   2 2
No Yes Thermoanaerobacter brockii subsp. finnii Ako-1   1 1
No Yes Acetohalobium arabaticum DSM 5501   2 2
No Yes Carnobacterium sp. 17-4   1 1
No Yes Enterococcus hirae ATCC 9790   2 2
No Yes Enterococcus faecium Aus0004   1 1
No Yes Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293   1 1
No Yes Lactobacillus crispatus ST1   1 1
No Yes Lactobacillus johnsonii FI9785   1 1
No Yes Lactobacillus amylovorus GRL1118   1 1
No Yes Lactobacillus brevis ATCC 367   1 1
No Yes Lactobacillus acidophilus 30SC   1 1
No Yes Pediococcus pentosaceus ATCC 25745   1 1
No Yes Streptococcus uberis 0140J   1 1
No Yes Streptococcus agalactiae A909   2 2
No Yes Oceanobacillus iheyensis HTE831   3 3
No Yes Geobacillus thermoleovorans CCB_US3_UF5   1 1
No Yes Bacillus pseudofirmus OF4   1 1
No Yes Bacillus cellulosilyticus DSM 2522   1 1
No Yes Staphylococcus lugdunensis HKU09-01   1 1
No Yes Staphylococcus epidermidis RP62A   1 1
No Yes Candidatus Cloacamonas acidaminovorans   1 1
No Yes Chlorobium chlorochromatii CaD3   1 1
No Yes Chlorobaculum parvum NCIB 8327   1 1
No Yes Chlorobium tepidum TLS   2 2
No Yes Flexibacter litoralis DSM 6794   1 1
No Yes Owenweeksia hongkongensis DSM 17368   1 1
No Yes Zobellia galactanivorans   1 1
No Yes Waddlia chondrophila WSU 86-1044   1 1
No Yes Chlamydia psittaci 01DC11   1 1
No Yes Pirellula staleyi DSM 6068   1 1
No Yes Thermanaerovibrio acidaminovorans DSM 6589   1 1
No Yes Petrotoga mobilis SJ95   1 1
No Yes Fervidobacterium pennivorans DSM 9078   1 1
No Yes Fervidobacterium nodosum Rt17-B1   1 1
No Yes Thermotoga lettingae TMO   1 1
No Yes Candidatus Chloracidobacterium thermophilum B   1 1
No Yes Granulicella mallensis MP5ACTX8   1 1
No Yes Terriglobus saanensis SP1PR4   2 2
No Yes candidate division WWE3 bacterium RAAC2_WWE3_1   2 2
No Yes Candidatus Saccharibacteria bacterium RAAC3_TM7_1   1 1
No Yes Candidatus Saccharimonas aalborgensis   1 1
No Yes Acidithiobacillus ferrivorans SS3   1 1
No Yes Acidithiobacillus ferrooxidans ATCC 53993   1 1
No Yes Bacteriovorax marinus SJ   1 1
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Arcobacter sp. L   1 1
No Yes Helicobacter bizzozeronii CIII-1   1 1
No Yes Desulfomonile tiedjei DSM 6799   2 2
No Yes Desulfohalobium retbaense DSM 5692   1 1
No Yes Desulfovibrio alaskensis G20   1 1
No Yes Haliangium ochraceum DSM 14365   1 1
No Yes Anaeromyxobacter sp. Fw109-5   1 1
No Yes Dechlorosoma suillum PS   1 1
No Yes Ralstonia pickettii 12D   1 1
No Yes Burkholderia glumae BGR1   1 1
No Yes Herminiimonas arsenicoxydans   1 1
No Yes Janthinobacterium sp. Marseille   1 1
No Yes Herbaspirillum seropedicae SmR1   1 1
No Yes Nitrosospira multiformis ATCC 25196   1 1
No Yes Ketogulonicigenium vulgare Y25   1 1
No Yes Rhodospirillum photometricum DSM 122   1 1
No Yes Azospirillum lipoferum 4B   1 1
No Yes Azospirillum brasilense Sp245   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Xanthobacter autotrophicus Py2   1 1
No Yes Azorhizobium caulinodans ORS 571   1 1
No Yes Methylobacterium sp. 4-46   3 3
No Yes Methylobacterium nodulans ORS 2060   1 1
No Yes Parvibaculum lavamentivorans DS-1   1 1
No Yes Brucella microti CCM 4915   1 1
No Yes Brucella pinnipedialis B2/94   1 1
No Yes Brucella canis ATCC 23365   1 1
No Yes Brucella suis ATCC 23445   1 1
No Yes Brucella melitensis ATCC 23457   1 1
No Yes Brucella ovis ATCC 25840   1 1
No Yes Brucella abortus S19   1 1
No Yes Bradyrhizobium japonicum USDA 110   1 1
No Yes Oceanimonas sp. GK1   1 1
No Yes Shewanella loihica PV-4   1 1
No Yes Pseudoalteromonas sp. SM9913   1 1
No Yes Kangiella koreensis DSM 16069   1 1
No Yes Xanthomonas campestris pv. campestris str. B100   1 1
No Yes Allochromatium vinosum DSM 180   2 2
No Yes Nitrosococcus oceani ATCC 19707   1 1
No Yes Legionella pneumophila str. Corby   1 1
No Yes Escherichia blattae DSM 4481   1 1
No Yes Cronobacter turicensis z3032   1 1
No Yes Enterobacter aerogenes KCTC 2190   1 1
No Yes Enterobacter sp. R4-368   1 1
No Yes Pseudomonas sp. VLB120   1 1
No Yes Nanoarchaeum equitans Kin4-M   1 1
No Yes Acidilobus saccharovorans 345-15   1 1
No Yes Pyrolobus fumarii 1A   3 3
No Yes Desulfurococcus mucosus DSM 2162   1 1
No Yes Thermofilum sp. 1910b   1 1
No Yes Thermofilum pendens Hrk 5   2 2
No Yes Pyrobaculum calidifontis JCM 11548   3 2
No Yes Pyrobaculum oguniense TE7   2 2
No Yes Pyrobaculum aerophilum str. IM2   1 1
No Yes Thermoproteus uzoniensis 768-20   1 1
No Yes Methanocella conradii HZ254   1 1
No Yes Methanosarcina acetivorans C2A   1 1
No Yes Methanoculleus bourgensis MS2   1 1
No Yes Archaeoglobus fulgidus DSM 4304   1 1
No Yes Pyrococcus abyssi GE5   1 1
No Yes Salinarchaeum sp. Harcht-Bsk1   1 1
No Yes Halopiger xanaduensis SH-6   1 1
No Yes Natrinema sp. J7-2   1 1
No Yes Halogeometricum borinquense DSM 11551   1 1
No Yes Halorhabdus utahensis DSM 12940   1 1
No Yes Natronomonas pharaonis DSM 2160   1 1
No Yes Haloarcula hispanica ATCC 33960   1 1
No Yes Halalkalicoccus jeotgali B3   2 2
No Yes Halobacterium salinarum R1   1 1
No Yes Methanocaldococcus sp. FS406-22   1 1
No Yes Methanocaldococcus vulcanius M7   1 1
No Yes Methanothermobacter marburgensis str. Marburg   1 1
No Yes Methanosphaera stadtmanae DSM 3091   1 1
No Yes Methanobrevibacter sp. AbM4   1 1
No Yes Methanobrevibacter ruminantium M1   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 149 51
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 126 29
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 83 18
No Yes Ascaris suum Victoria/Ghent Pig roundworm 64 20
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 37 11
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   2 2
No Yes Cryptococcus neoformans JEC21   2 2
No Yes Paracoccidioides brasiliensis Pb01   5 3
No Yes Paracoccidioides brasiliensis Pb03   3 2
No Yes Coccidioides posadasii str. Silveira   6 4
No Yes Coccidioides immitis RMSCC 3703   3 3
No Yes Coccidioides immitis RMSCC 2394   5 3
No Yes Coccidioides immitis H538.4   4 4
No Yes Ajellomyces dermatitidis ER-3   3 2
No Yes Histoplasma capsulatum H143   3 2
No Yes Histoplasma capsulatum H88   3 2
No Yes Histoplasma capsulatum G186AR   3 2
No Yes Aspergillus fumigatus A1163   5 4
No Yes Candida albicans WO-1   2 2
No Yes Batrachochytrium dendrobatidis JEL423   9 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 1 1
No Yes Hordeum vulgare 22 Domesticated barley 10 10
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 5 5
No Yes Trypanosoma brucei Lister 427 v4.1   4 3
No Yes Neospora caninum Nc-Liverpool 6.2   1 1
No Yes Plasmodium falciparum HB3   1 1
No Yes Dactylococcopsis salina PCC 8305   1 1
No Yes Oscillatoria nigro-viridis PCC 7112   5 4
No Yes Oscillatoria acuminata PCC 6304   1 1
No Yes Cyanothece sp. PCC 7822   2 1
No Yes Cyanothece sp. PCC 7424   1 1
No Yes Cyanobacterium aponinum PCC 10605   1 1
No Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327   1 1
No Yes Stanieria cyanosphaera PCC 7437   1 1
No Yes Candidatus Phytoplasma australiense Strawberry lethal yellows phytoplasma (CPA) str. NZSb11   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Corynebacterium halotolerans YIM 70093 = DSM 44683   1 1
No Yes Corynebacterium diphtheriae HC02   1 1
No Yes Thermus oshimai JL-2   1 1
No Yes Thermus thermophilus JL-18   1 1
No Yes Sulfobacillus acidophilus TPY   1 1
No Yes Roseburia intestinalis XB6B4   2 2
No Yes Clostridium perfringens str. 13   1 1
No Yes Thermoanaerobacterium saccharolyticum JW/SL-YS485   1 1
No Yes Thermoanaerobacterium thermosaccharolyticum M0795   1 1
No Yes Thermacetogenium phaeum DSM 12270   1 1
No Yes Thermoanaerobacter sp. X513   1 1
No Yes Enterococcus faecium Aus0085   1 1
No Yes Enterococcus faecium NRRL B-2354   1 1
No Yes Enterococcus faecium DO   2 2
No Yes Leuconostoc mesenteroides subsp. mesenteroides J18   1 1
No Yes Lactobacillus johnsonii N6.2   1 1
No Yes Lactobacillus johnsonii NCC 533   1 1
No Yes Lactobacillus amylovorus GRL 1112   1 1
No Yes Lactobacillus brevis KB290   1 1
No Yes Lactobacillus acidophilus La-14   1 1
No Yes Lactobacillus acidophilus NCFM   1 1
No Yes Pediococcus pentosaceus SL4   1 1
No Yes Lactococcus lactis subsp. lactis KF147   1 1
No Yes Streptococcus equi subsp. zooepidemicus ATCC 35246   2 2
No Yes Streptococcus equi subsp. zooepidemicus   1 1
No Yes Streptococcus pyogenes Alab49   1 1
No Yes Streptococcus agalactiae GD201008-001   1 1
No Yes Bacillus coagulans 36D1   1 1
No Yes Staphylococcus lugdunensis N920143   1 1
No Yes Staphylococcus epidermidis ATCC 12228   1 1
No Yes Chlorobium phaeobacteroides BS1   1 1
No Yes Echinicola vietnamensis DSM 17526   1 1
No Yes Chlamydia psittaci WC   1 1
No Yes Chlamydia psittaci MN   1 1
No Yes Chlamydia psittaci 84/55   1 1
No Yes Chlamydia psittaci 08DC60   1 1
No Yes Chlamydia psittaci 02DC15   1 1
No Yes Chlamydia psittaci C19/98   1 1
No Yes Chlamydia psittaci NJ1   1 1
No Yes Chlamydia psittaci CP3   1 1
No Yes Chlamydophila psittaci RD1   1 1
No Yes Chlamydophila psittaci 6BC   1 1
No Yes Chlamydophila psittaci 6BC   1 1
No Yes Acidithiobacillus ferrooxidans ATCC 23270   1 1
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Helicobacter pylori BM012S   1 1
No Yes Helicobacter pylori UM037   1 1
No Yes Helicobacter pylori PeCan18   1 1
No Yes Helicobacter pylori Puno135   2 2
No Yes Helicobacter pylori ELS37   1 1
No Yes Helicobacter pylori Sat464   1 1
No Yes Helicobacter pylori SJM180   1 1
No Yes Helicobacter pylori 83   1 1
No Yes Helicobacter pylori Shi470   1 1
No Yes Helicobacter pylori F32   1 1
No Yes Desulfovibrio vulgaris str. 'Miyazaki F'   1 1
No Yes Sorangium cellulosum So0157-2   1 1
No Yes Ralstonia pickettii 12J   1 1
No Yes Burkholderia thailandensis MSMB121   1 1
No Yes Zymomonas mobilis subsp. pomaceae ATCC 29192   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Candidatus Pelagibacter ubique HTCC1062   1 1
No Yes Wolbachia endosymbiont of Drosophila simulans wNo   1 1
No Yes Brucella ceti TE10759-12   1 1
No Yes Brucella canis HSK A52141   1 1
No Yes Brucella suis VBI22   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella melitensis NI   1 1
No Yes Brucella melitensis M5-90   1 1
No Yes Brucella melitensis M28   1 1
No Yes Brucella abortus A13334   1 1
No Yes Brucella melitensis biovar Abortus 2308   1 1
No Yes Brucella abortus bv. 1 str. 9-941   1 1
No Yes Sinorhizobium meliloti GR4   1 1
No Yes Mannheimia succiniciproducens MBEL55E   1 1
No Yes Pasteurella multocida 36950   1 1
No Yes Stenotrophomonas maltophilia JV3   1 1
No Yes Stenotrophomonas maltophilia R551-3   1 1
No Yes Xanthomonas campestris pv. raphani 756C   1 1
No Yes Xanthomonas campestris pv. campestris str. 8004   1 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   1 1
No Yes Thioalkalivibrio nitratireducens DSM 14787   1 1
No Yes Coxiella burnetii RSA 331   1 1
No Yes Legionella pneumophila subsp. pneumophila str. Philadelphia 1   1 1
No Yes Legionella pneumophila subsp. pneumophila ATCC 43290   1 1
No Yes Legionella pneumophila 2300/99 Alcoy   1 1
No Yes Raoultella ornithinolytica B6   1 1
No Yes Salmonella bongori N268-08   1 1
No Yes Enterobacter aerogenes EA1509E   1 1
No Yes Pseudomonas putida HB3267   1 1
No Yes Sulfolobus islandicus REY15A   1 1
No Yes Methanolobus psychrophilus R15   1 1
No Yes Thermococcus litoralis DSM 5473   1 1
No Yes Halovivax ruber XH-70   1 1
No Yes Natrinema pellirubrum DSM 15624   2 1
No Yes Natronococcus occultus SP4   1 1
No Yes Natronomonas moolapensis 8.8.11   1 1
No Yes Haloarcula hispanica N601   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 204 75
No Yes Homo sapiens (NCBI version) Human 125 39
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 81 26
No Yes Heliconius numata (Incomplete)   6 6
No Yes Loa loa v3.3 (Request) Eye worm 38 16
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 33 17
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 28 8
No Yes Moniliophthora perniciosa FA553 (Genome survey)   5 5
No Yes Lotus japonicus (Early assembly)   2 2
No Yes Malus x domestica (Duplicate) Apple 8 8
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   6 5
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Phoenix dactylifera (Early draft) Date palm 3 3
No Yes Homo sapiens 69_37 Human 90 27
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 76 25
No Yes Gorilla gorilla 69_3.1 Western gorilla 65 22
No Yes Pongo abelii 69_2 Sumatran orangutan 72 23
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 65 22
No Yes Macaca mulatta 69_1 Rhesus monkey 85 28
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 68 21
No Yes Otolemur garnettii 69_3 Small-eared galago 72 21
No Yes Microcebus murinus 69_1 Gray mouse lemur 72 19
No Yes Rattus norvegicus 69_3.4 Norway rat 73 24
No Yes Mus musculus 69_38 House mouse 84 27
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 58 16
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 61 16
No Yes Cavia porcellus 69_3 Domestic guinea pig 49 18
No Yes Oryctolagus cuniculus 69_2 Rabbit 68 21
No Yes Ochotona princeps 69 American pika 52 15
No Yes Tupaia belangeri 69 Northern tree shrew 61 17
No Yes Sus scrofa 69_10.2 Pig 82 29
No Yes Bos taurus 69_3.1 Cattle 80 26
No Yes Vicugna pacos 69_1 Alpaca 39 11
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 66 20
No Yes Mustela putorius furo 69_1.0 Domestic ferret 62 26
No Yes Ailuropoda melanoleuca 69_1 Giant panda 77 24
No Yes Canis familiaris 69_3.1 Dog 72 20
No Yes Felis catus 69 Domestic cat 64 18
No Yes Equus caballus 69_2 Horse 72 21
No Yes Myotis lucifugus 69_2.0 Little brown bat 72 24
No Yes Pteropus vampyrus 69_1 Large flying fox 73 22
No Yes Sorex araneus 69_1 European shrew 51 17
No Yes Erinaceus europaeus 69 Western European hedgehog 57 18
No Yes Procavia capensis 69_1 Cape rock hyrax 65 22
No Yes Loxodonta africana 69_3 African savanna elephant 80 22
No Yes Echinops telfairi 69 Small Madagascar hedgehog 50 20
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 48 14
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 40 12
No Yes Macropus eugenii 69_1.0 Tammar wallaby 59 20
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 71 23
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 49 19
No Yes Ornithorhynchus anatinus 69_5 Platypus 67 27
No Yes Petromyzon marinus 69_7.0 Sea lamprey 35 15
No Yes Meleagris gallopavo 69_2 Turkey 58 19
No Yes Gallus gallus 69_2 Chicken 84 24
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 83 25
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 58 20
No Yes Anolis carolinensis 69_2.0 Green anole 66 20
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 96 30
No Yes Latimeria chalumnae 69_1 Coelacanth 64 21
No Yes Gadus morhua 69_1 Atlantic cod 103 31
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 112 35
No Yes Takifugu rubripes 69_4 Torafugu 85 33
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 117 35
No Yes Oryzias latipes 69_1 Japanese medaka 129 47
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 90 29
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 107 34
No Yes Danio rerio 69_9 Zebrafish 178 53
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 36 11
No Yes Ciona intestinalis 69 Vase tunicate 32 12
No Yes Drosophila melanogaster 69_5 Fruit fly 72 15
No Yes Caenorhabditis elegans 69_215 Roundworm 35 9
No Yes Arabidopsis thaliana 10 Thale cress 2 2
No Yes 1_050719N (meta-genome)   6 5
No Yes 2_050719S (meta-genome)   13 10
No Yes 3_050719R (meta-genome)   11 11
No Yes 4_050719Q (meta-genome)   8 7
No Yes 5_050719P (meta-genome)   6 6
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   1 1
No Yes Bath Hot Springs, filamentous community (meta-genome)   7 5
No Yes Bath Hot Springs, planktonic community (meta-genome)   7 6
No Yes Combined (meta-genome)   3 3
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   2 2
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   12 12
No Yes Dump top (Dump top) (meta-genome)   10 9
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   3 3
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   4 4
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   6 6
No Yes Hot Spring microbial communities from Yellowstone Obsidian Hot Spring, Sample 10594 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   11 11
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   11 10
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   7 7
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   10 9
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)   9 9
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   6 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   4 4
No Yes Human Gut Community Subject 7 (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   9 9
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   7 7
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   2 2
No Yes NCBI 2017_08 genome   61601 25319
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   7 7
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   2 1
No Yes Protozoadb 2010_08 (Protozoadb)   153 108
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   3 3
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   2 2
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   16 16
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   8 8
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   10 10
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   9 9
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   2966 1178
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   1 1
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   34780 15049
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   3 3
No Yes Global Ocean Sampling Expedition (GOS)   200 194
No Yes NCBI plasmid sequences (Plasmids)   15 15
No Yes NCBI viral sequences (Viral)   35 35
No Yes PDB chains (SCOP 1.75) (PDB)   6 4
No Yes Protein Data Bank (all PDB sequenc)   89 41
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   37 37
No Yes TargetDB (Targets)   27 15
No Yes The Salmonella enterica Pan-genome (meta-genome)   1 1
No Yes UniProt viral sequences (Viral)   33 33

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