SUPERFAMILY 1.75 HMM library and genome assignments server

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Homeodomain-like superfamily assignments to selected genomes

Click on the pictures below to see domain assignment details for that sequence.

The key to the domain colours is at the bottom of the page.




Natronococcus occultus SP4


gi|435847637|ref|YP_007309887.1|

gi|435845853|ref|YP_007308103.1|

gi|435849443|ref|YP_007311631.1|

gi|435848404|ref|YP_007310654.1|

gi|435848827|ref|YP_007311077.1|


Natronobacterium gregoryi SP2


gi|429193688|ref|YP_007179366.1|

gi|429191182|ref|YP_007176860.1|

gi|429192635|ref|YP_007178313.1|

gi|429193528|ref|YP_007179206.1|

gi|429191362|ref|YP_007177040.1|

gi|429193216|ref|YP_007178894.1|

gi|429192105|ref|YP_007177783.1|

gi|429191611|ref|YP_007177289.1|

gi|429191753|ref|YP_007177431.1|

gi|429192656|ref|YP_007178334.1|

gi|429191877|ref|YP_007177555.1|

gi|429191261|ref|YP_007176939.1|

gi|429192351|ref|YP_007178029.1|

gi|429192636|ref|YP_007178314.1|

gi|429193172|ref|YP_007178850.1|

gi|429191752|ref|YP_007177430.1|

gi|429192769|ref|YP_007178447.1|


Haloquadratum walsbyi C23


gi|385804321|ref|YP_005840721.1|

gi|385804441|ref|YP_005840841.1|

gi|385802588|ref|YP_005838988.1|

gi|385804449|ref|YP_005840849.1|

gi|385804545|ref|YP_005840945.1|

gi|529167408|ref|YP_005840799.2|

gi|385804393|ref|YP_005840793.1|

gi|385804314|ref|YP_005840714.1|

gi|385803486|ref|YP_005839886.1|


Halorhabdus tiamatea SARL4B


gi|529078096|ref|YP_008377099.1|

gi|529077698|ref|YP_008376701.1|

gi|529077265|ref|YP_008376268.1|

gi|529043452|ref|YP_008369671.1|

gi|529078998|ref|YP_008378001.1|

gi|529077481|ref|YP_008376484.1|

gi|529079102|ref|YP_008378105.1|

gi|529043553|ref|YP_008369772.1|

gi|529077457|ref|YP_008376460.1|

gi|529077369|ref|YP_008376372.1|

gi|529077423|ref|YP_008376426.1|

gi|529077446|ref|YP_008376449.1|


Natronomonas moolapensis 8.8.11


gi|452206971|ref|YP_007487093.1|

gi|452207056|ref|YP_007487178.1|

gi|452206457|ref|YP_007486579.1|

gi|452207314|ref|YP_007487436.1|

gi|452207288|ref|YP_007487410.1|

gi|452206467|ref|YP_007486589.1|

gi|452206381|ref|YP_007486503.1|

gi|452207364|ref|YP_007487486.1|

gi|452206581|ref|YP_007486703.1|

gi|452206465|ref|YP_007486587.1|

gi|452208571|ref|YP_007488693.1|

gi|452207366|ref|YP_007487488.1|

gi|452207864|ref|YP_007487986.1|

gi|452206466|ref|YP_007486588.1|


Haloarcula hispanica N601


gi|564288910|ref|YP_008875133.1|

gi|564288181|ref|YP_008874394.1|

gi|564288386|ref|YP_008874586.1|

gi|564288180|ref|YP_008874393.1|

gi|564287961|ref|YP_008874152.1|

gi|564290258|ref|YP_008876549.1|

gi|564287964|ref|YP_008874155.1|

gi|564288843|ref|YP_008875065.1|


Methanococcus maripaludis X1


gi|340624094|ref|YP_004742547.1|

gi|340624102|ref|YP_004742555.1|

gi|340624344|ref|YP_004742797.1|

gi|340624134|ref|YP_004742587.1|

gi|340623642|ref|YP_004742095.1|


Methanococcus maripaludis C6


gi|159906018|ref|YP_001549680.1|

gi|159906198|ref|YP_001549860.1|

gi|159904846|ref|YP_001548508.1|

gi|159904410|ref|YP_001548072.1|


Methanococcus maripaludis C7


gi|150402192|ref|YP_001329486.1|

gi|150403380|ref|YP_001330674.1|

gi|150402012|ref|YP_001329306.1|

gi|150403370|ref|YP_001330664.1|

gi|150401969|ref|YP_001329263.1|


Methanococcus maripaludis S2


gi|45358362|ref|NP_987919.1|

gi|45358354|ref|NP_987911.1|

gi|45358586|ref|NP_988143.1|

gi|45358403|ref|NP_987960.1|

gi|45358017|ref|NP_987574.1|

gi|45358329|ref|NP_987886.1|


Methanobacterium sp. SWAN-1


gi|333987020|ref|YP_004519627.1|

gi|333987293|ref|YP_004519900.1|

gi|333988365|ref|YP_004520972.1|

gi|333987077|ref|YP_004519684.1|

gi|333987980|ref|YP_004520587.1|

gi|333987136|ref|YP_004519743.1|