SUPERFAMILY 1.75 HMM library and genome assignments server

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Helical scaffold and wing domains of SecA superfamily assignments to selected genomes

Click on the pictures below to see domain assignment details for that sequence.

The key to the domain colours is at the bottom of the page.




Capitella sp. I


jgi|Capca1|101425|e_gw1.5289.1.1


Schistosoma mansoni


Smp_129030


Nematostella vectensis 1.0


jgi|Nemve1|224462|fgenesh1_pg.scaffold_4795000002


Trichoplax adhaerens


jgi|Triad1|62687|fgeneshTA2_pg.C_scaffold_324000002


Aspergillus zonatus v1.0


jgi|Aspzo1|146619|fgenesh1_pg.23_#_42

jgi|Aspzo1|145551|fgenesh1_pg.16_#_235


Selaginella moellendorffii


jgi|Selmo1|160951|estExt_Genewise1.C_1090146

jgi|Selmo1|156007|estExt_Genewise1.C_590135

jgi|Selmo1|85961|e_gw1.7.789.1

jgi|Selmo1|176627|estExt_Genewise1Plus.C_360058


Pinus taeda


PITA_000026261-RA

PITA_000086215-RA


Picea abies


MA_9251669g0020


Eucalyptus grandis v201


Eucgr.A01004.2|PACid:23562727

Eucgr.A01004.1|PACid:23562726

Eucgr.A01004.3|PACid:23562728

Eucgr.F03833.1|PACid:23585024


Theobroma cacao B97-61/B2 v1


Tc01_g032900

Tc08_g010690


Gossypium raimondii v221


Gorai.008G134600.1|PACid:26817370

Gorai.008G134600.3|PACid:26817371

Gorai.013G107400.3|PACid:26786966

Gorai.013G107400.4|PACid:26786967

Gorai.013G107400.2|PACid:26786965

Gorai.008G134600.2|PACid:26817372

Gorai.013G107400.5|PACid:26786968

Gorai.013G107400.1|PACid:26786964


Citrus clementina v165


clementine0.9_001507m|PACid:19263741

clementine0.9_001089m|PACid:19273133


Citrus sinensis v154


orange1.1g002707m|PACid:18107441

orange1.1g002515m|PACid:18107440

orange1.1g002898m|PACid:18107442

orange1.1g005155m|PACid:18107443


Thellungiella halophila v173


Thhalv10028392m|PACid:20197881

Thhalv10006535m|PACid:20185720


Brassica rapa Chiifu-401 1.2


Bra000915

Bra016412


Capsella rubella v183


Carubv10002752m|PACid:20907569

Carubv10011823m|PACid:20893050


Arabidopsis lyrata


jgi|Araly1|490399|fgenesh2_kg.6__3533__AT4G01800.1

jgi|Araly1|313056|fgenesh1_pm.C_scaffold_1001836


Arabidopsis thaliana 10


AT4G01800.1

AT4G01800.2

AT1G21650.2

AT1G21650.3

AT1G21650.1


Carica papaya


evm.TU.supercontig_57.14

evm.TU.supercontig_64.142


Medicago truncatula


Medtr1g086050.1

Medtr3g088555.1

Medtr3g088555.3


Phaseolus vulgaris v186


Phvulv091005519m|PACid:23532017

Phvulv091014206m|PACid:23552200


Glycine max v109


Glyma10g27810.1|PACid:16280137

Glyma02g01060.2|PACid:16246562

Glyma02g01060.1|PACid:16246561

Glyma02g01060.3|PACid:16246563

Glyma06g12320.1|PACid:16262656


Cucumis sativus v122


Cucsa.076230.1|PACid:16955832

Cucsa.107060.1|PACid:16959552


Fragaria vesca


gene24475

gene11257


Malus domestica v196


MDP0000199343|PACid:22627154

MDP0000146434|PACid:22625975

MDP0000237525|PACid:22622619