SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

PUA domain-like superfamily assignments to selected genomes

Click on the pictures below to see domain assignment details for that sequence.

The key to the domain colours is at the bottom of the page.




Nanoarchaeum equitans Kin4-M


gi|41615239|ref|NP_963737.1|

gi|41615000|ref|NP_963498.1|

gi|41614954|ref|NP_963452.1|

gi|41615094|ref|NP_963592.1|

gi|41615087|ref|NP_963585.1|


Candidatus Caldiarchaeum subterraneum


gi|557693978|ref|YP_008797032.1|

gi|557693922|ref|YP_008796976.1|

gi|557693589|ref|YP_008796643.1|

gi|557694126|ref|YP_008797180.1|

gi|557694868|ref|YP_008797922.1|


Cenarchaeum symbiosum A


gi|118575282|ref|YP_875025.1|

gi|118577074|ref|YP_876817.1|

gi|118575465|ref|YP_875208.1|

gi|118575518|ref|YP_875261.1|

gi|118576913|ref|YP_876656.1|


Candidatus Nitrosopumilus sp. AR2


gi|407465489|ref|YP_006776371.1|

gi|407465821|ref|YP_006776703.1|

gi|407465521|ref|YP_006776403.1|

gi|407465645|ref|YP_006776527.1|

gi|407464263|ref|YP_006775145.1|

gi|407464586|ref|YP_006775468.1|

gi|407465588|ref|YP_006776470.1|


Nitrosopumilus maritimus SCM1


gi|161528994|ref|YP_001582820.1|

gi|161527562|ref|YP_001581388.1|

gi|161529026|ref|YP_001582852.1|

gi|161528203|ref|YP_001582029.1|

gi|161527914|ref|YP_001581740.1|

gi|161529111|ref|YP_001582937.1|


Candidatus Korarchaeum cryptofilum OPF8


gi|170290094|ref|YP_001736910.1|

gi|170291189|ref|YP_001738005.1|

gi|170289701|ref|YP_001736517.1|

gi|170290666|ref|YP_001737482.1|

gi|170290974|ref|YP_001737790.1|

gi|170290684|ref|YP_001737500.1|


Acidilobus saccharovorans 345-15


gi|302347854|ref|YP_003815492.1|

gi|302348714|ref|YP_003816352.1|

gi|302348784|ref|YP_003816422.1|

gi|302348820|ref|YP_003816458.1|

gi|302348106|ref|YP_003815744.1|


Fervidicoccus fontis Kam940


gi|385805902|ref|YP_005842300.1|

gi|385806159|ref|YP_005842557.1|

gi|385806109|ref|YP_005842507.1|

gi|385805084|ref|YP_005841482.1|

gi|385805535|ref|YP_005841933.1|


Pyrolobus fumarii 1A


gi|347522956|ref|YP_004780526.1|

gi|347523831|ref|YP_004781401.1|

gi|347522770|ref|YP_004780340.1|

gi|347524226|ref|YP_004781796.1|

gi|347523266|ref|YP_004780836.1|

gi|347523590|ref|YP_004781160.1|

gi|347522650|ref|YP_004780220.1|


Hyperthermus butylicus DSM 5456


gi|124028346|ref|YP_001013666.1|

gi|124028184|ref|YP_001013504.1|

gi|124027836|ref|YP_001013156.1|

gi|124028415|ref|YP_001013735.1|

gi|124027286|ref|YP_001012606.1|

gi|124027597|ref|YP_001012917.1|

gi|124028404|ref|YP_001013724.1|

gi|124027360|ref|YP_001012680.1|


Thermogladius cellulolyticus 1633


gi|389860537|ref|YP_006362776.1|

gi|389860677|ref|YP_006362917.1|

gi|389860602|ref|YP_006362842.1|

gi|389860553|ref|YP_006362792.1|

gi|389860750|ref|YP_006362990.1|

gi|389860893|ref|YP_006363133.1|


Ignisphaera aggregans DSM 17230


gi|305663154|ref|YP_003859442.1|

gi|305662620|ref|YP_003858908.1|

gi|305663514|ref|YP_003859802.1|

gi|305663689|ref|YP_003859977.1|

gi|305662663|ref|YP_003858951.1|

gi|305662544|ref|YP_003858832.1|

gi|305663295|ref|YP_003859583.1|

gi|305662839|ref|YP_003859127.1|


Aeropyrum pernix K1


gi|118431360|ref|NP_147779.2|

gi|118431091|ref|NP_147299.2|

gi|118431292|ref|NP_147652.2|

gi|118431587|ref|NP_148160.2|

gi|118430886|ref|NP_146976.2|

gi|14601183|ref|NP_147715.1|

gi|14601786|ref|NP_148327.1|

gi|118430899|ref|NP_146994.2|


Ignicoccus hospitalis KIN4/I


gi|156937761|ref|YP_001435557.1|

gi|156936817|ref|YP_001434613.1|

gi|156936814|ref|YP_001434610.1|

gi|156937715|ref|YP_001435511.1|

gi|156937478|ref|YP_001435274.1|

gi|156936828|ref|YP_001434624.1|

gi|156937950|ref|YP_001435746.1|

gi|156937691|ref|YP_001435487.1|


Thermosphaera aggregans DSM 11486


gi|296242980|ref|YP_003650467.1|

gi|296243009|ref|YP_003650496.1|

gi|296243044|ref|YP_003650531.1|

gi|296242733|ref|YP_003650220.1|


Staphylothermus hellenicus DSM 12710


gi|297526474|ref|YP_003668498.1|

gi|297527449|ref|YP_003669473.1|

gi|297527553|ref|YP_003669577.1|

gi|297527486|ref|YP_003669510.1|

gi|297527515|ref|YP_003669539.1|

gi|297526090|ref|YP_003668114.1|


Staphylothermus marinus F1


gi|126465248|ref|YP_001040357.1|

gi|126465877|ref|YP_001040986.1|

gi|126465777|ref|YP_001040886.1|

gi|126465945|ref|YP_001041054.1|

gi|126465840|ref|YP_001040949.1|

gi|126465811|ref|YP_001040920.1|

gi|126465627|ref|YP_001040736.1|


Desulfurococcus fermentans DSM 16532


gi|390939092|ref|YP_006402830.1|

gi|390939060|ref|YP_006402798.1|

gi|390937802|ref|YP_006401540.1|

gi|390939107|ref|YP_006402845.1|

gi|390938885|ref|YP_006402623.1|


Desulfurococcus kamchatkensis 1221n


gi|218884567|ref|YP_002428949.1|

gi|218884602|ref|YP_002428984.1|

gi|218884458|ref|YP_002428840.1|

gi|218884620|ref|YP_002429002.1|

gi|218884374|ref|YP_002428756.1|


Desulfurococcus mucosus DSM 2162


gi|320101436|ref|YP_004177028.1|

gi|320101463|ref|YP_004177055.1|

gi|320101393|ref|YP_004176985.1|

gi|320101484|ref|YP_004177076.1|

gi|320101269|ref|YP_004176861.1|


Metallosphaera cuprina Ar-4


gi|330834594|ref|YP_004409322.1|

gi|330835878|ref|YP_004410606.1|

gi|330833923|ref|YP_004408651.1|

gi|330835738|ref|YP_004410466.1|

gi|330834473|ref|YP_004409201.1|


Metallosphaera sedula DSM 5348


gi|146303742|ref|YP_001191058.1|

gi|146304270|ref|YP_001191586.1|

gi|146302978|ref|YP_001190294.1|

gi|146305020|ref|YP_001192336.1|

gi|146302842|ref|YP_001190158.1|

gi|146304380|ref|YP_001191696.1|


Acidianus hospitalis W1


gi|332796151|ref|YP_004457651.1|

gi|332796746|ref|YP_004458246.1|

gi|332796489|ref|YP_004457989.1|

gi|332796420|ref|YP_004457920.1|

gi|332796948|ref|YP_004458448.1|


Sulfolobus tokodaii str. 7


gi|15922901|ref|NP_378570.1|

gi|15920824|ref|NP_376493.1|

gi|15922669|ref|NP_378338.1|

gi|15920528|ref|NP_376197.1|

gi|15920607|ref|NP_376276.1|

gi|15921679|ref|NP_377348.1|


Sulfolobus islandicus Y.N.15.51


gi|229581040|ref|YP_002839439.1|

gi|229583491|ref|YP_002841890.1|

gi|229581608|ref|YP_002840007.1|

gi|229581728|ref|YP_002840127.1|

gi|229581314|ref|YP_002839713.1|

gi|229581707|ref|YP_002840106.1|