SUPERFAMILY 1.75 HMM library and genome assignments server

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Lesion bypass DNA polymerase (Y-family), little finger domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 6 SUPERFAMILY models representing the Lesion bypass DNA polymerase (Y-family), little finger domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0049570 905 2008-09-10 d1t94a1 Lesion bypass DNA polymerase (Y-family), little finger domain
0039846 36 2005-09-08 d1k1sa1 Lesion bypass DNA polymerase (Y-family), little finger domain
0047594 54 2008-09-10 d1jiha1 Lesion bypass DNA polymerase (Y-family), little finger domain
0039801 79 2005-09-08 d1jx4a1 Lesion bypass DNA polymerase (Y-family), little finger domain
0049960 432 2008-09-10 d1unnc_ Lesion bypass DNA polymerase (Y-family), little finger domain
0043855 13 2005-09-08 d1t3na1 Lesion bypass DNA polymerase (Y-family), little finger domain