SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

NagB/RpiA/CoA transferase-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 32 SUPERFAMILY models representing the NagB/RpiA/CoA transferase-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0048730 625 2008-09-10 d1pbta_ NagB-like
0048341 1170 2008-09-10 d1ne7a_ NagB-like
0046311 283 2008-09-10 d1deaa_ NagB-like
0052827 264 2008-09-10 d2g39a1 CoA transferase alpha subunit-like
0040763 259 2005-09-08 d1m3ea1 CoA transferase alpha subunit-like
0051075 922 2008-09-10 d1xr4a2 CoA transferase alpha subunit-like
0051774 496 2008-09-10 d2ahua2 CoA transferase alpha subunit-like
0051074 301 2008-09-10 d1xr4a1 CoA transferase alpha subunit-like
0039928 315 2005-09-08 d1k6da_ CoA transferase alpha subunit-like
0048793 476 2008-09-10 d1poia_ CoA transferase alpha subunit-like
0052828 1555 2008-09-10 d2g39a2 CoA transferase alpha subunit-like
0042405 202 2005-09-08 d1poib_ CoA transferase beta subunit-like
0040764 313 2005-09-08 d1m3ea2 CoA transferase beta subunit-like
0051773 630 2008-09-10 d2ahua1 CoA transferase beta subunit-like
0040524 366 2005-09-08 d1lk5a1 D-ribose-5-phosphate isomerase (RpiA), catalytic domain
0040229 285 2005-09-08 d1ks2a1 D-ribose-5-phosphate isomerase (RpiA), catalytic domain
0040719 279 2005-09-08 d1m0sa1 D-ribose-5-phosphate isomerase (RpiA), catalytic domain
0044389 401 2005-09-08 d1uj6a1 D-ribose-5-phosphate isomerase (RpiA), catalytic domain
0043918 302 2005-09-08 d1t9ka_ IF2B-like
0053682 1030 2010-05-31 d2a0ua1 IF2B-like
0044937 256 2005-09-08 d1w2w.1 IF2B-like
0043889 278 2005-09-08 d1t5oa_ IF2B-like
0050123 921 2008-09-10 d1vb5a_ IF2B-like
0050636 1040 2008-09-10 d1wkca_ Methenyltetrahydrofolate synthetase
0043544 274 2005-09-08 d1sbqa_ Methenyltetrahydrofolate synthetase
0043684 288 2005-09-08 d1soua_ Methenyltetrahydrofolate synthetase
0052833 614 2008-09-10 d2g40a1 YkgG-like
0054958 587 2010-05-31 d3efba1 SorC sugar-binding domain-like
0054313 617 2010-05-31 d2o0ma1 SorC sugar-binding domain-like
0054645 697 2010-05-31 d2r5fa1 SorC sugar-binding domain-like
0053957 637 2010-05-31 d2gnpa1 SorC sugar-binding domain-like
0054380 661 2010-05-31 d2okga1 SorC sugar-binding domain-like