SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

all-alpha NTP pyrophosphatases superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 10 SUPERFAMILY models representing the all-alpha NTP pyrophosphatases superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0041843 72 2005-09-08 d1ogla_ Type II deoxyuridine triphosphatase
0050348 101 2008-09-10 d1w2ya_ Type II deoxyuridine triphosphatase
0051698 653 2008-09-10 d2a3qa1 MazG-like
0052946 1559 2008-09-10 d2gtad1 MazG-like
0050254 1739 2008-09-10 d1vmga_ MazG-like
0053260 3 2008-09-10 d2p06a1 AF0060-like
0051216 1260 2008-09-10 d1y6xa1 HisE-like (PRA-PH)
0051439 1221 2008-09-10 d1yxba1 HisE-like (PRA-PH)
0051724 1350 2008-09-10 d2a7wa1 HisE-like (PRA-PH)
0051426 1356 2008-09-10 d1yvwa1 HisE-like (PRA-PH)