SUPERFAMILY 1.75 HMM library and genome assignments server

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Aminomethyltransferase beta-barrel domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 5 SUPERFAMILY models representing the Aminomethyltransferase beta-barrel domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0048427 151 2008-09-10 d1nrka1 Aminomethyltransferase beta-barrel domain
0042335 313 2005-09-08 d1pj5a1 Aminomethyltransferase beta-barrel domain
0045001 306 2005-09-08 d1wosa1 Aminomethyltransferase beta-barrel domain
0050059 1397 2008-09-10 d1v5va1 Aminomethyltransferase beta-barrel domain
0044876 239 2005-09-08 d1vloa1 Aminomethyltransferase beta-barrel domain