SUPERFAMILY 1.75 HMM library and genome assignments server

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Ligand-binding domain in the NO signalling and Golgi transport superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 4 SUPERFAMILY models representing the Ligand-binding domain in the NO signalling and Golgi transport superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0044205 45 2005-09-08 d1u55a_ H-NOX domain
0050429 276 2008-09-10 d1wc9a_ TRAPP components
0054190 299 2010-05-31 d2j3wb1 TRAPP components
0054410 165 2010-05-31 d2osoa1 MJ1460-like