SUPERFAMILY 1.75 HMM library and genome assignments server

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Cytochrome c superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 72 SUPERFAMILY models representing the Cytochrome c superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0035869 1093 2005-09-08 d1c75a_ monodomain cytochrome c
0042837 1167 2005-09-08 d1ql3a_ monodomain cytochrome c
0045581 991 2005-09-08 d451ca_ monodomain cytochrome c
0046190 2272 2008-09-10 d1cora_ monodomain cytochrome c
0036151 1562 2005-09-08 d1ctja_ monodomain cytochrome c
0040303 914 2005-09-08 d1kx2a_ monodomain cytochrome c
0045102 1262 2005-09-08 d1ytca_ monodomain cytochrome c
0046083 3111 2008-09-10 d1c6ra_ monodomain cytochrome c
0046408 97 2008-09-10 d1dw0a_ monodomain cytochrome c
0036071 1108 2005-09-08 d1cnoa_ monodomain cytochrome c
0044968 1248 2005-09-08 d1wejf_ monodomain cytochrome c
0045678 1151 2008-09-10 d155ca_ monodomain cytochrome c
0046236 4559 2008-09-10 d1cyja_ monodomain cytochrome c
0046788 3458 2008-09-10 d1fi3a_ monodomain cytochrome c
0035855 1003 2005-09-08 d1c52a_ monodomain cytochrome c
0038140 666 2005-09-08 d1gksa_ monodomain cytochrome c
0039492 987 2005-09-08 d1jdla_ monodomain cytochrome c
0045496 1179 2005-09-08 d3c2ca_ monodomain cytochrome c
0046109 4242 2008-09-10 d1ccra_ monodomain cytochrome c
0046488 271 2008-09-10 d1e8ea_ monodomain cytochrome c
0048246 1643 2008-09-10 d1mz4a_ monodomain cytochrome c
0036087 523 2005-09-08 d1cota_ monodomain cytochrome c
0038691 814 2005-09-08 d1hroa_ monodomain cytochrome c
0045084 1042 2005-09-08 d1yeba_ monodomain cytochrome c
0046079 2203 2008-09-10 d1c53a_ monodomain cytochrome c
0046407 2912 2008-09-10 d1dvva_ monodomain cytochrome c
0047110 1445 2008-09-10 d1h32b_ monodomain cytochrome c
0052127 3776 2008-09-10 d2c8sa1 monodomain cytochrome c
0035909 674 2005-09-08 d1cc5a_ monodomain cytochrome c
0042874 995 2005-09-08 d1qn2a_ monodomain cytochrome c
0045615 1187 2005-09-08 d5cytr_ monodomain cytochrome c
0046233 1300 2008-09-10 d1cxca_ monodomain cytochrome c
0046678 1875 2008-09-10 d1f1ca_ monodomain cytochrome c
0035824 542 2005-09-08 d1c2ra_ monodomain cytochrome c
0036446 991 2005-09-08 d1diqc_ monodomain cytochrome c
0038062 1286 2005-09-08 d1gdva_ monodomain cytochrome c
0039356 1344 2005-09-08 d1j3sa_ monodomain cytochrome c
0040640 1410 2005-09-08 d1ls9a_ monodomain cytochrome c
0045374 982 2005-09-08 d2mtac_ monodomain cytochrome c
0046084 3585 2008-09-10 d1c6sa_ monodomain cytochrome c
0046439 795 2008-09-10 d1e29a_ monodomain cytochrome c
0036078 911 2005-09-08 d1co6a_ monodomain cytochrome c
0037329 1511 2005-09-08 d1f1fa_ monodomain cytochrome c
0038594 969 2005-09-08 d1hh7a_ monodomain cytochrome c
0045077 1289 2005-09-08 d1ycca_ monodomain cytochrome c
0045713 2705 2008-09-10 d1a56a_ monodomain cytochrome c
0046405 3706 2008-09-10 d1dvha_ monodomain cytochrome c
0051351 1406 2008-09-10 d1ynra1 monodomain cytochrome c
0048374 4586 2008-09-10 d1nira1 N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
0048977 3656 2008-09-10 d1qksa1 N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
0035454 201 2005-09-08 d1bccd2 Cytochrome bc1 domain
0037291 269 2005-09-08 d1ezvd1 Cytochrome bc1 domain
0037177 1414 2005-09-08 d1etpa1 Two-domain cytochrome c
0038370 608 2005-09-08 d1h1oa1 Two-domain cytochrome c
0037492 657 2005-09-08 d1fcdc2 Two-domain cytochrome c
0037491 1150 2005-09-08 d1fcdc1 Two-domain cytochrome c
0037178 1214 2005-09-08 d1etpa2 Two-domain cytochrome c
0047100 2585 2008-09-10 d1h1oa2 Two-domain cytochrome c
0046513 740 2008-09-10 d1eb7a1 Di-heme cytochrome c peroxidase
0039131 513 2005-09-08 d1iqca2 Di-heme cytochrome c peroxidase
0047418 847 2008-09-10 d1iqca1 Di-heme cytochrome c peroxidase
0036886 592 2005-09-08 d1eb7a2 Di-heme cytochrome c peroxidase
0041461 630 2005-09-08 d1nmla2 Di-heme cytochrome c peroxidase
0048389 813 2008-09-10 d1nmla1 Di-heme cytochrome c peroxidase
0040281 1179 2005-09-08 d1kv9a1 Quinoprotein alcohol dehydrogenase, C-terminal domain
0040004 1451 2005-09-08 d1kb0a1 Quinoprotein alcohol dehydrogenase, C-terminal domain
0039582 6 2005-09-08 d1jjua2 Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
0039644 6 2005-09-08 d1jmxa2 Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
0039643 236 2005-09-08 d1jmxa1 Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
0047602 725 2008-09-10 d1jjua1 Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
0038389 293 2005-09-08 d1h32a2 Di-heme cytochrome c SoxA
0038388 457 2005-09-08 d1h32a1 Di-heme cytochrome c SoxA