SUPERFAMILY 1.75 HMM library and genome assignments server

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C-terminal effector domain of the bipartite response regulators superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 13 SUPERFAMILY models representing the C-terminal effector domain of the bipartite response regulators superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0048684 10105 2008-09-10 d1p2fa1 PhoB-like
0052669 3812 2008-09-10 d2ff4a1 PhoB-like
0049014 10061 2008-09-10 d1qqia_ PhoB-like
0048619 9543 2008-09-10 d1opca_ PhoB-like
0047798 9879 2008-09-10 d1kgsa1 PhoB-like
0051385 9912 2008-09-10 d1ys7a1 PhoB-like
0045681 7465 2008-09-10 d1a04a1 GerE-like (LuxR/UhpA family of transcriptional regulators)
0048694 7455 2008-09-10 d1p4wa_ GerE-like (LuxR/UhpA family of transcriptional regulators)
0046851 8043 2008-09-10 d1fsea_ GerE-like (LuxR/UhpA family of transcriptional regulators)
0051317 7937 2008-09-10 d1yioa1 GerE-like (LuxR/UhpA family of transcriptional regulators)
0047924 4391 2008-09-10 d1l3la1 GerE-like (LuxR/UhpA family of transcriptional regulators)
0048012 170 2008-09-10 d1lq1a_ Spo0A
0046746 169 2008-09-10 d1fc3a_ Spo0A