SUPERFAMILY 1.75 HMM library and genome assignments server

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Ribosomal protein L11, C-terminal domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 6 SUPERFAMILY models representing the Ribosomal protein L11, C-terminal domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0053642 899 2010-05-31 d1xbpg1 Ribosomal protein L11, C-terminal domain
0047166 1066 2008-09-10 d1hc8a_ Ribosomal protein L11, C-terminal domain
0054892 880 2010-05-31 d3cjrb1 Ribosomal protein L11, C-terminal domain
0049332 1148 2008-09-10 d1s72i_ Ribosomal protein L11, C-terminal domain
0053998 838 2010-05-31 d2gycg1 Ribosomal protein L11, C-terminal domain
0048192 1144 2008-09-10 d1mmsa1 Ribosomal protein L11, C-terminal domain